Oceanic Oxygen Minimum Zones Research Articles

Episodic intensification of marine phosphorus burial over the last 80 million years

Marine phosphatization events cause episodic carbonate fluorapatite (CFA) precipitation on seamounts, and are commonly linked to growth hiatuses in ferromanganese (Fe-Mn) crusts. However, the complete record of these events and their paleoenvironmental significance remains poorly understood, in large part due to poor age constraints. Here, we apply U-Pb dating to CFA in Fe-Mn crusts from Western Pacific seamounts. These data exhibit good alignment with Sr isotope ages, revealing six potential phosphatization events. This established CFA chronology tightens the timespan of phosphatization events and refines the age framework of Fe-Mn crusts. We subsequently utilize a multiproxy approach to demonstrate that the phosphatization events occurred coeval with the expansion of oceanic oxygen minimum zones. The Western Pacific Fe-Mn crusts thus document major perturbations in global oceanic phosphorus cycling, which appear to have been driven by climate-induced increases in primary productivity linked to changes in global ocean circulation.

Marine sulfate sulfur isotopic evidence for enhanced terrestrial weathering and expansion of oceanic anoxia during the Devonian-Carboniferous transition

The Hangenberg mass extinction during the Devonian-Carboniferous (D-C) transition represents one of the largest biodiversity losses of the Phanerozoic, while the underlying cause remains controversial. An improved understanding of the contemporaneous sulfur cycle can provide insights into the latest Devonian environmental changes that potentially affected marine biotas. Here, we report on a high-resolution chemostratigraphic study of the sulfur isotopic composition of carbonate-associated sulfate (CAS) through the D-C transition in the Long'an and Qilinzhai sections of South China. The δ34SCAS profiles exhibit a long-term (i.e., >105 yr) negative excursion from +19.0‰ in the upper Lower Si. praesulcata Zone to +13.0‰ in the middle Upper Si. praesulcata Zone, and terminated with a recovery to 20.3‰ in the lower Si. sulcata – Si. duplicata zones, representing a depositional interval of ∼0.9 Myr. In addition, this long-term negative excursion is punctuated by episodic sharp negative shifts. The negative δ34SCAS excursion coincided with the end-Devonian biotic crisis, a positive shift in carbonate δ13C, and negative shifts in bulk-sediment δ15N values and I/Ca ratios. Increasing organic carbon burial indicated by the positive shift in δ13C precludes decreased pyrite burial as an explanation for the negative shift of δ34SCAS, supported by intensified marine anoxia revealed by the negative shifts in δ15N and I/Ca. We attribute the long-term negative shift in δ34SCAS to enhanced inputs of 34S-depleted riverine sulfate in conjunction with low seawater sulfate concentrations within the semi-restricted Yangtze Sea, whereas the transient negative spikes in δ34SCAS were possibly caused by episodic upwelling and oxidation of H2S in expanded oceanic oxygen-minimum zones. In conjunction with the positive shift in δ13C, the negative shift in δ34SCAS supports a significant role for enhanced subaerial weathering in intensifying marine anoxia and triggering the biotic crises that occurred during the latest Devonian, the most likely driver of which was the spread of vascular (especially seed-bearing) land plants.

Collaborative metabolisms of urea and cyanate degradation in marine anammox bacterial culture.

Anammox process greatly contributes to nitrogen loss occurring in oceanic oxygen minimum zones (OMZs), where the availability of NH4+ is scarce as compared with NO2-. Remineralization of organic nitrogen compounds including urea and cyanate (OCN-) into NH4+ has been believed as an NH4+ source of the anammox process in oxygen minimum zones. However, urea- or OCN-- dependent anammox has not been well examined due to the lack of marine anammox bacterial culture. In the present study, urea and OCN- degradation in a marine anammox bacterial consortium were investigated based on 15N-tracer experiments and metagenomic analysis. Although a marine anammox bacterium, Candidatus Scalindua sp., itself was incapable of urea and OCN- degradation, urea was anoxically decomposed to NH4+ by the coexisting ureolytic bacteria (Rhizobiaceae, Nitrosomonadaceae, and/or Thalassopiraceae bacteria), whereas OCN- was abiotically degraded to NH4+. The produced NH4+ was subsequently utilized in the anammox process. The activity of the urea degradation increased under microaerobic condition (ca. 32-42 μM dissolved O2, DO), and the contribution of the anammox process to the total nitrogen loss also increased up to 33.3% at 32 μM DO. Urea-dependent anammox activities were further examined in a fluid thioglycolate media with a vertical gradient of O2 concentration, and the active collaborative metabolism of the urea degradation and anammox was detected at the lower oxycline (21 μM DO).

Unique ocean circulation pathways reshape the Indian Ocean oxygen minimum zone with warming

Abstract. The global ocean is losing oxygen with warming. Observations and Earth system model projections, however, suggest that this global ocean deoxygenation does not equate to a simple and systematic expansion of tropical oxygen minimum zones (OMZs). Previous studies have focused on the Pacific Ocean; they showed that the outer OMZ deoxygenates and expands as oxygen supply by advective transport weakens, the OMZ core oxygenates and contracts due to a shift in the composition of the source waters supplied by slow mixing, and in between these two regimes oxygen is redistributed with little effect on OMZ volume. Here, we examine the OMZ response to warming in the Indian Ocean using an ensemble of Earth system model high-emissions scenario experiments from the Coupled Model Intercomparison Project Phase 6. We find a similar expansion–redistribution–contraction response but show that the unique ocean circulation pathways of the Indian Ocean lead to far more prominent OMZ contraction and redistribution regimes than in the Pacific Ocean. As a result, only the outermost volumes (oxygen>180 µmol kg−1) expand. The Indian Ocean experiences a broad oxygenation in the southwest driven by a reduction in waters supplied by the Indonesian Throughflow in favor of high-oxygen waters supplied from the southern Indian Ocean gyre. Models also project a strong localized deoxygenation in the northern Arabian Sea due to the rapid warming and shoaling of marginal sea outflows (Red Sea and Persian Gulf) and increases in local stratification with warming. We extend the existing conceptual framework used to explain the Pacific OMZ response to interpret the response in the Indian Ocean.

Extensive Accumulation of Nitrous Oxide in the Oxygen Minimum Zone in the Bay of Bengal

AbstractThe production by microorganisms of nitrous oxide (N2O), a trace gas contributing to global warming and stratospheric ozone depletion, is enhanced around the oceanic oxygen minimum zones (OMZs). The production constitutes an important source of atmospheric N2O. Although an OMZ is found in the northern part of the eastern Indian Ocean, the Bay of Bengal (BoB), two earlier studies conducted during the later phase of winter monsoon (February) and spring intermonsoon (March–April) found quite different magnitudes of N2O accumulation. This study found two‐ to ten‐fold greater accumulation of N2O during the autumn intermonsoon (November) than for other seasons described in earlier reports. The maximum N2O concentration (136 nmol kg−1 at 16°N, 88°E) is comparable to those observed around the OMZ in the Arabian Sea or eastern tropical Pacific. Isotopic signatures suggest that bacterial denitrification and archeal nitrification play important roles in N2O production, but earlier studies using nitrate or nitrite analysis did not confirm denitrification in the BoB. Large seasonal variation of N2O implicates the BoB as an important N2O source, similar to the Arabian Sea and eastern tropical Pacific, if the accumulated N2O is emitted to the atmosphere during the subsequent monsoon season.

Formulation, optimization, and sensitivity of NitrOMZv1.0, a biogeochemical model of the nitrogen cycle in oceanic oxygen minimum zones

Abstract. Nitrogen (N) plays a central role in marine biogeochemistry by limiting biological productivity in the surface ocean; influencing the cycles of other nutrients, carbon, and oxygen; and controlling oceanic emissions of nitrous oxide (N2O) to the atmosphere. Multiple chemical forms of N are linked together in a dynamic N cycle that is especially active in oxygen minimum zones (OMZs), where high organic matter remineralization and low oxygen concentrations fuel aerobic and anaerobic N transformations. Biogeochemical models used to understand the oceanic N cycle and project its change often employ simple parameterizations of the network of N transformations and omit key intermediary tracers such as nitrite (NO2-) and N2O. Here we present a new model of the oceanic N cycle (Nitrogen cycling in Oxygen Minimum Zones, or NitrOMZ) that resolves N transformation occurring within OMZs and their sensitivity to environmental drivers. The model is designed to be easily coupled to current ocean biogeochemical models by representing the major forms of N as prognostic tracers and parameterizing their transformations as a function of seawater chemistry and organic matter remineralization, with minimal interference in other elemental cycles. We describe the model rationale, formulation, and numerical implementation in a one-dimensional representation of the water column that reproduces typical OMZ conditions. We further detail the optimization of uncertain model parameters against observations from the eastern tropical South Pacific OMZ and evaluate the model's ability to reproduce observed profiles of N tracers and transformation rates in this region. We conclude by describing the model's sensitivity to parameter choices and environmental factors and discussing the model's suitability for ocean biogeochemical studies.

Data and software for submission of "Unique ocean circulation pathways reshape the Indian Ocean oxygen minimum zone with warming"

Data and software for submission of "Unique ocean circulation pathways reshape the Indian Ocean oxygen minimum zone with warming"

Do phytoplankton require oxygen to survive? A hypothesis and model synthesis from oxygen minimum zones

AbstractIt is commonly known that phytoplankton have a pivotal role in marine biogeochemistry and ecosystems as carbon fixers and oxygen producers, but their response to deoxygenation has scarcely been studied. Nonetheless, in the major oceanic oxygen minimum zones (OMZs), all surface phytoplankton groups, regardless of size, disappear and are replaced by unique cyanobacteria lineages below the oxycline. To develop reasonable hypotheses to explain this pattern, we conduct a review of available information on OMZ phytoplankton, and we re‐analyze previously published data (flow cytometric and hydrographic) on vertical structure of phytoplankton communities in relation to light and O2 levels. We also review the physical constraints on O2 acquisition as well as O2‐dependent metabolisms in phototrophs. These considerations, along with estimates of the photosynthetic capacity of phytoplankton along OMZ depth profiles using published data, suggest that top‐down grazing, respiratory demand, and irradiance are insufficient to fully explain the vertical structure observed in the upper, more sunlit portions of OMZs. Photorespiration and water–water cycles are O2‐dependent pathways with low O2 affinities. Although their metabolic roles are still poorly understood, a hypothetical dependence on such pathways by the phytoplankton adapted to the oxic ocean might explain vertical patterns in OMZs and results of laboratory experiments. This can be represented in a simple model in which the requirement for photorespiration in surface phytoplankton and O2‐inhibition of OMZ lineages reproduces the observed vertical fluorescence profiles and the replacement of phytoplankton adapted to O2 by lineages restricted to the most O2‐deficient waters. A high O2 requirement by modern phytoplankton would suggest a positive feedback that intensifies trends in OMZ extent and ocean oxygenation or deoxygenation, both in Earth's past and in response to current climate change.

Distribution and stability of Mn complexes in the ocean: Influence of hydrothermal plumes and weather events

AbstractWe measured the speciation of dissolved Mn from the surface to just above the hydrothermal vents at 9°50′N East Pacific Rise in the open ocean of the Pacific over a 3‐week period. Total dissolved Mn concentrations ranged from 2.2 to 135 nmol L−1 with a significant contribution of dissolved Mn(III) bound to humic acid in one third of our samples representing up to 64% of the total dissolved Mn. These humic complexes were mostly detected in the hydrothermal vent plume and at the redox boundaries of the oxygen minimum zone in the water column. In the hydrothermal plume, the Mn(III)‐humic acid stabilized the manganese in solution up to a ~ 10,000‐fold dilution of the venting water. In the upper water column, Mn(III)‐humic acid was only detected after a squall and rain event, which indicates that it is a transient species, persistent over days to weeks. This temporal variability highlights the importance of non‐steady‐state processes in the open ocean, which may help to explain previous observations of a dissolved Mn maximum within oceanic oxygen minimum zones.

Diverging Fates of the Pacific Ocean Oxygen Minimum Zone and Its Core in a Warming World

AbstractGlobal ocean oxygen loss is projected to persist in the future, but Earth system models (ESMs) have not yet provided a consistent picture of how it will influence the largest oxygen minimum zone (OMZ) in the tropical Pacific. We examine the change in the Pacific OMZ volume in an ensemble of ESMs from the CMIP6 archive, considering a broad range of oxygen (O2) thresholds relevant to biogeochemical cycles and ecosystems (5–160 µmol/kg). Despite OMZ biases in the historical period of the simulations, the ESM ensemble projections consistently fall into three regimes across ESMs: an expansion of low oxygenated waters (+0.8 [0.6, 1.0] × 1016 m3/century for O2 ≤ 120 µmol/kg, ESM median and interquartile range); a slight contraction of the OMZ core although more uncertain across ESMs (−0.1 [−0.5, 0.0] × 1016 m3/century for O2 ≤ 20 µmol/kg); and at the transition from contraction to expansion regimes, a spatial redistribution but near‐zero change in the volume of hypoxic waters (0.0 [−0.3, +0.1] × 1016 m3/century for O2 ≤ 60 µmol/kg). Changes in circulation and biology dictate the shift from expansion to contraction. Specifically, reduced subtropical ventilation controls the expansion of low oxygenated waters, while a combination of circulation and biological changes explains the contraction of the core (likely changes in mixing, reduced intermediate ventilation and oxygen demand). Increased model complexity (e.g., ecosystem dynamics and equatorial circulation) likely stabilize the OMZ response, suggesting that future changes might lie in the lower bound of current projections. The expansion of low oxygenated waters which delimit the optimum habitat of numerous marine species would severely impact ecosystems and ecosystem services.

Microbial community structures and important taxa across oxygen gradients in the Andaman Sea and eastern Bay of Bengal epipelagic waters

In oceanic oxygen minimum zones (OMZs), the abundances of aerobic organisms significantly decrease and energy shifts from higher trophic levels to microorganisms, while the microbial communities become critical drivers of marine biogeochemical cycling activities. However, little is known of the microbial ecology of the Andaman Sea and eastern Bay of Bengal (BoB) OMZs. In the present study, a total of 131 samples which from the Andaman Sea and eastern BoB epipelagic waters were analyzed. The microbial community distribution patterns across oxygen gradients, including oxygenic zones (OZs, dissolved oxygen [DO] ≥ 2 mg/L), oxygen limited zones (OLZs, 0.7 mg/L < DO < 2 mg/L), and OMZs (DO ≤ 0.7 mg/L), were investigated. Mantel tests and Spearman's correlation analysis revealed that DO was the most important driver of microbial community structures among several environmental factors. Microbial diversity, richness, and evenness were highest in the OLZs and lowest in the OZs. The microbial community compositions of OZ and OMZ waters were significantly different. Random forest analysis revealed 24 bioindicator taxa that differentiated OZ, OLZ, and OMZ water communities. These bioindicator taxa included Burkholderiaceae, HOC36, SAR11 Clade IV, Thioglobaceae, Nitrospinaceae, SAR86, and UBA10353. Further, co-occurrence network analysis revealed that SAR202, AEGEAN-169, UBA10353, SAR406, and Rhodobacteraceae were keystone taxa among the entire interaction network of the microbial communities. Functional prediction further indicated that the relative abundances of microbial populations involved in nitrogen and sulfur cycling were higher in OMZs. Several microbial taxa, including the Thioglobaceae, Nitrospinaceae, SAR202, SAR406, WPS-2, UBA10353, and Woeseiaceae, may be involved in nitrogen and/or sulfur cycling, while also contributing to oxygen consumption in these waters. This study consequently provides new insights into the microbial community structures and potentially important taxa that contribute to oxygen consumption in the Andaman Sea and eastern BoB OMZ.

Into the Dark: Exploring the Deep Ocean with Single-Virus Genomics.

Single-virus genomics (SVGs) has been successfully applied to ocean surface samples allowing the discovery of widespread dominant viruses overlooked for years by metagenomics, such as the uncultured virus vSAG 37-F6 infecting the ubiquitous Pelagibacter spp. In SVGs, one uncultured virus at a time is sorted from the environmental sample, whole-genome amplified, and sequenced. Here, we have applied SVGs to deep-ocean samples (200–4000 m depth) from global Malaspina and MEDIMAX expeditions, demonstrating the feasibility of this method in deep-ocean samples. A total of 1328 virus-like particles were sorted from the North Atlantic Ocean, the deep Mediterranean Sea, and the Pacific Ocean oxygen minimum zone (OMZ). For this proof of concept, sixty single viruses were selected at random for sequencing. Genome annotation identified 27 of these genomes as bona fide viruses, and detected three auxiliary metabolic genes involved in nucleotide biosynthesis and sugar metabolism. Massive protein profile analysis confirmed that these viruses represented novel viral groups not present in databases. Although they were not previously assembled by viromics, global fragment recruitment analysis showed a conserved profile of relative abundance of these viruses in all analyzed samples spanning different oceans. Altogether, these results reveal the feasibility in using SVGs in this vast environment to unveil the genomes of relevant viruses.

Bacteriohopanepolyols across the Black Sea redoxcline trace diverse bacterial metabolisms

Redox gradients in oceanic oxygen minimum zones are hotspots of diverse bacterial populations and metabolisms. Here, we test whether bacteriohopanepolyols (BHPs), a suite of membrane-regulating pentacyclic triterpenoid lipids, are suitable tracers of major bacterial metabolisms and whether their structural diversity (BHP lipidomics) allows tracing the bacterial ecology across the Black Sea chemocline. We analyzed suspended particulate matter (SPM) sampled along depth-profiles across the redox/chemocline at two sites in the eastern and western gyres and underlying core-top sediments at the western gyre site. Our results show that BHPs abundances reflect the stratification of the Black Sea and capture ecological niches across the chemocline, being highest in the lower suboxic zone and in upper to deep sulfidic waters. BHP-inferred bacterial metabolisms in the lower suboxic zone are dominated by anammox and aerobic methane oxidizers (primarily by Type I/gammaproteobacteria). Bacterial biomass production in the upper to deep sulfidic zone is mirrored by a range of BHPs that are normally associated with aerobic metabolisms, most likely explained by either survival in oxygenated micro-niches or production by anaerobic bacteria (which could possibly include sulfate reducers and nitrite-dependent methane oxidizers). Most surprisingly, this ecological niche harbors seemingly unknown anaerobic bacteria which produce abundant C-2 and C-3 methylated BHPs. Core-top sediments reflect the BHP structural diversity found in SPM, but with notable compositional differences. Most strikingly, the export dynamics seem to result in near-absence of C-2 methylated BHPs in surface sediments. Sedimentary BHP distributions therefore underestimate the importance of C-2 methylated BHPs in the water column, which has implications for the geological record.

Responses of Horizontally Expanding Oceanic Oxygen Minimum Zones to Climate Change Based on Observations

AbstractDue to climate change, global oceanic dissolved oxygen (DO) has been decreasing, and oxygen minimum zones (OMZs) have been expanding. Here, we estimate the annual global and regional OMZ areas using geostatistical regression combined with Monte Carlo. From 1960 to 2019, annual global OMZ20 (DO &lt; 20 μmol/kg) and OMZ60 (DO &lt; 60 μmol/kg) areas cover 5%–14% and 15%–32% of the global ocean, respectively. The global and most regional OMZ areas after the late 2000s were all significantly larger than those in previous years. Most oceanic regions likely experienced significant expansions in OMZ areas, especially the North Pacific. However, the equatorial Pacific with the largest OMZ area showed insignificant horizontal expansion. The expanding OMZ areas of most oceans responded more quickly and effectively to the surrounding sea temperatures than to the sea surface temperatures. Our research highlights the need for marine resource management to account for the challenges from OMZs.

Substantial oxygen consumption by aerobic nitrite oxidation in oceanic oxygen minimum zones

Oceanic oxygen minimum zones (OMZs) are globally significant sites of biogeochemical cycling where microorganisms deplete dissolved oxygen (DO) to concentrations <20 µM. Amid intense competition for DO in these metabolically challenging environments, aerobic nitrite oxidation may consume significant amounts of DO and help maintain low DO concentrations, but this remains unquantified. Using parallel measurements of oxygen consumption rates and 15N-nitrite oxidation rates applied to both water column profiles and oxygen manipulation experiments, we show that the contribution of nitrite oxidation to overall DO consumption systematically increases as DO declines below 2 µM. Nitrite oxidation can account for all DO consumption only under DO concentrations <393 nM found in and below the secondary chlorophyll maximum. These patterns are consistent across sampling stations and experiments, reflecting coupling between nitrate reduction and nitrite-oxidizing Nitrospina with high oxygen affinity (based on isotopic and omic data). Collectively our results demonstrate that nitrite oxidation plays a pivotal role in the maintenance and biogeochemical dynamics of OMZs.

The Diversity and Nitrogen Metabolism of Culturable Nitrate-Utilizing Bacteria Within the Oxygen Minimum Zone of the Changjiang (Yangtze River) Estuary

The nitrogen cycle is an indispensable part of the biogeochemical cycle, and the reactions that occur in the ocean oxygen minimum zone (OMZ) mediate much of the loss of nitrogen from oceans worldwide. Here, nitrate-utilizing bacteria were isolated from the water column at 17 stations within the OMZ of the Changjiang (Yangtze River) Estuary using selective media and a culture-dependent method. The microbial diversity, nitrogen metabolism and nitrate reduction test of culturable heterotrophic bacteria were examined. A total of 164 isolates were obtained; they were mostly affiliated with Proteobacteria (81.1%), Actinobacteria (5.5%), Bacteroidetes (12.3%), and Firmicutes (0.6%). Pseudomonas aeruginosa, Sphingobium naphthae, and Zunongwangia profunda were found at most stations. Among 24 tested representative strains, 8 were positive for nitrate reduction; they belonged to genera Aurantimonas, Halomonas, Marinobacter, Pseudomonas, Thalassospira, and Vibrio. Pseudomonas aeruginosa contained the genes (napAB, norBC, nirS, and nosZ) for complete denitrification and may be responsible for mediating denitrification. 66% representative isolates (16/24) contained genes for reducing nitrate to nitrite (nasA, napAB, or narGHI) and 79% representative isolates (19/24) possessed genes for converting nitrite to ammonia (nirA or nirBD), suggesting that nitrate and nitrite could act as electron acceptors to generate ammonium, subsequently being utilized as a reduced nitrogen source. This study improves our understanding of the microbial diversity within the OMZ of Changjiang Estuary and may facilitate the cultivation and exploitation of bacteria involved in the nitrogen cycle.

Sulfur cycling in oceanic oxygen minimum zones

AbstractThe sulfur cycle is an important, although understudied facet of today's modern oxygen minimum zones (OMZs). Sulfur cycling is most active in highly productive coastal OMZs where sulfide‐rich sediments interact with the overlying water column, forming a tightly coupled benthic‐pelagic sulfur cycle. In such productive coastal systems, highly eutrophic and anoxic conditions can result in the benthic release of sulfide leading to an intensification of OMZ‐shelf biogeochemistry. Active blooms involving a succession of sulfide‐oxidizing bacteria detoxify sulfide and reduce nitrate to N2, while generating nitrite and ammonium that augment anammox and nitrification. Furthermore, the abiotic interactions of sulfide with trace metals may have the potential to moderate nitrous oxide emissions. While sulfide/sulfur accumulation events were previously considered to be rare, new evidence indicates that events can develop in OMZ shelf waters over prolonged periods of anoxia. The prevalence of these events has ramifications for nitrogen loss and greenhouse gas emissions, including other linked cycles involving carbon and phosphorous. Sulfur‐based metabolisms and activity also extend into the offshore OMZ as a result of particle microniches and lateral transport processes. Moreover, OMZ waters ubiquitously host a community of organosulfur‐based heterotrophs that ostensibly moderate the turnover of organic sulfur, offering an exciting avenue for future research. Our synthesis highlights the widespread distribution and multifaceted nature of the sulfur cycle in oceanic OMZs.

Environmental association of heterotrophic micro-eukaryotes in the varying biogeochemical regimes of the Arabian Sea, resolved via high-throughput sequencing

The diverse physicochemical conditions prevailing in the Arabian Sea are expected to result in marked spatial variations in heterotrophic flagellate (HF) and ciliate communities. Here, we report the environmental association of heterotrophic micro-eukaryotes, particularly the heterotrophic flagellates and ciliates, based on 18S rRNA gene survey in the region. High-throughput next-generation sequencing, using the V4 eukaryotic-specific primer, was employed to study the composition of these communities associated with low-O2 waters in both coastal and offshore settings. Canonical correspondence analysis (CCA) revealed a preference of the heterotrophic flagellates for nitrate- and nitrite-rich zones. Notably, the heterotrophic nanoflagellate genus Monosiga showed a strong positive correlation with NO3−, which suggests its potential denitrifying capability. Shannon’s entropy analysis revealed a higher HF diversity in the hypoxic waters of the open ocean (depth 103 m), whereas ciliates were more diverse at oxygenated coastal stations. The estuarine waters exhibited a low diversity of both ciliates and flagellates. The UPGMA clusters of heterotrophic flagellates and ciliates in suboxic waters of the open ocean oxygen minimum zone were distinct from those found at other sites. Overall, CCA revealed the important relationship between nitrite, nitrate, salinity and chlorophyll a, which could be important factors for the partitioning of different ecological niches for specific HF and ciliate communities in the Arabian Sea. The community of heterotrophic protists that can adapt to varying biogeochemical regimes has been identified.

Hypoxic Jumbo Squid Activate Neuronal Apoptosis but Not MAPK or Antioxidant Enzymes during Oxidative Stress.

AbstractThe limitations that hypoxia imparts on mitochondrial oxygen supply are circumvented by the activation of anaerobic metabolism and prosurvival mechanisms in hypoxia-tolerant animals. To deal with the hypoxia that jumbo squid (Dosidicus gigas) experience in the ocean's depth, they depress their metabolic rate by up to 52% relative to normoxic conditions. This is coupled with molecular reorganization to facilitate their daily descents into the ocean's oxygen minimum zone, where they face not only low oxygen levels but also higher pressures and colder frigid waters. Our current study explores the tissue-specific hypoxia responses of three central processes: (1) antioxidant enzymes responsible for defending against oxidative stress, (2) early apoptotic machinery that signals the activation of cell death, and (3) mitogen-activated protein kinases (MAPKs) that act as central regulators of numerous cellular processes. Luminex xMAP technology was used to assess protein levels and phosphorylation states under normoxic and hypoxic conditions in brains, branchial hearts, and mantle muscles. Hypoxic brains were found to activate apoptosis via upregulation of phospho-p38, phospho-p53, activated caspase 8, and activated caspase 9, whereas branchial hearts were the only tissue to show an increase in antioxidant enzyme levels. Hypoxic muscles seemed the least affected by hypoxia. Our results suggest that hypoxic squid do not undergo large dynamic changes in the phosphorylation states of key apoptotic and central MAPK factors, except for brains, suggesting that these mechanisms are involved in squid hypometabolic responses.

Diversity and N2O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone.

Fungi in terrestrial environments are known to play a key role in carbon and nitrogen biogeochemistry and exhibit high diversity. In contrast, the diversity and function of fungi in the ocean has remained underexplored and largely neglected. In the eastern tropical North Pacific oxygen minimum zone, we examined the fungal diversity by sequencing the internal transcribed spacer region 2 (ITS2) and mining a metagenome dataset collected from the same region. Additionally, we coupled 15N-tracer experiments with a selective inhibition method to determine the potential contribution of marine fungi to nitrous oxide (N2O) production. Fungal communities evaluated by ITS2 sequencing were dominated by the phyla Basidiomycota and Ascomycota at most depths. However, the metagenome dataset showed that about one third of the fungal community belong to early-diverging phyla. Fungal N2O production rates peaked at the oxic–anoxic interface of the water column, and when integrated from the oxycline to the top of the anoxic depths, fungi accounted for 18–22% of total N2O production. Our findings highlight the limitation of ITS-based methods typically used to investigate terrestrial fungal diversity and indicate that fungi may play an active role in marine nitrogen cycling.