A thorough literature review was conducted on the effects of free surface oscillation in open channels, highlighting the risks of the occurrence of positive and negative surge waves that can lead to overtopping. Experimental analyses were developed to focus on the instability of the flow due to constrictions, gate blockages, and the start-up and shutdown of hydropower plants. A forebay at the downstream end of a tunnel or canal provides the right conditions for the penstock inlet and regulates the temporary demand of the turbines. In tests with a flow of 60 to 100 m3/h, the effects of a gradually and rapidly varying flow in the free surface profile were analyzed. The specific energy and total momentum are used in the mathematical characterization of the boundaries along the free surface water profile. A sudden turbine stoppage or a sudden gate or valve closure can lead to hydraulic drilling and overtopping of the infrastructure wall. At the same time, a PID controller, if programmed appropriately, can reduce flooding by 20–40%. Flooding is limited to 0.8 m from an initial amplitude of 2 m, with a dissipation wave time of between 25 and 5 s, depending on the flow conditions and the parameters of the PID characteristics.