Occupied Colonies Research Articles

Defining spring foraging habitat and prioritization of conservation sites for Tricolored Blackbirds in California, USA

Abstract The Tricolored Blackbird (Agelaius tricolor) is a range-restricted, colonial-nesting species in decline. Colonies include tens of thousands of individuals that forage in the surrounding landscape, at times commuting miles between nesting and foraging grounds. We explored the role of landscape composition on colony occupancy and mapped core and potential spring foraging habitat in California, USA. We used observations of spring Tricolored Blackbird nesting colonies from 2008, 2011, and 2014 and characterized changes in the surrounding landscape during an extended drought. Then, we constructed occurrence and abundance models in order to map core foraging habitat across 4 ecoregions in California. Finally, we used simulated land cover changes to identify potential habitat under restoration scenarios. Across the 3 survey years, surface water declined over time at unoccupied colony locations but remained stable at occupied colony locations, confirming that permanent surface water was a critical feature of persistent Tricolored Blackbird colonies. Average percent cover of nearly all land cover types suitable for foraging, as well as frequency of dairies and median NDVI, were all higher in current or historical colony sites than elsewhere. The proportion of surrounding alfalfa, grasslands, and surface water were the elements of foraging habitat best able to predict Tricolored Blackbird early breeding season colony presence and colony size. Core foraging habitat covered over 6 million acres in the study region, but only 18% was occupied in 2014. This result suggests a need to study additional factors determining colony occurrence and persistence, such as landscape connectivity, distributions of nesting substrates, and risk from predators. The vast majority (93.1%) of Tricolored Blackbird core habitat occurred on private land; therefore, saving the species will require engagement and partnership with private landowners.

Differential Occupation of Available Coral Hosts by Coral-Dwelling Damselfish (Pomacentridae) on Australia’s Great Barrier Reef

Associations between habitat-forming, branching scleractinian corals and damselfish have critical implications for the function and trophic dynamics of coral reef ecosystems. This study quantifies how different characteristics of reef habitat, and of coral morphology, determine whether fish occupy a coral colony. In situ surveys of aggregative damselfish–coral associations were conducted at 51 different sites distributed among 22 reefs spread along >1700 km of the Great Barrier Reef, to quantify interaction frequency over a large spatial scale. The prevalence of fish–coral associations between five damselfish (Chromis viridis, Dascyllus aruanus, Dascyllus reticulatus, Pomacentrus amboinensis and Pomacentrus moluccensis) and five coral species (Acropora spathulata, Acropora intermedia, Pocillopora damicornis, Seriatopora hystrix, and Stylophora pistillata) averaged ~30% across all corals, but ranged from <1% to 93% of small branching corals occupied at each site, depending on reef exposure levels and habitat. Surprisingly, coral cover was not correlated with coral occupancy, or total biomass of damselfish. Instead, the biomass of damselfish was two-fold greater on sheltered sites compared with exposed sites. Reef habitat type strongly governed these interactions with reef slope/base (25%) and shallow sand-patch habitats (38%) hosting a majority of aggregative damselfish-branching coral associations compared to reef flat (10%), crest (16%), and wall habitats (11%). Among the focal coral species, Seriatopora hystrix hosted the highest damselfish biomass (12.45 g per occupied colony) and Acropora intermedia the least (6.87 g per occupied colony). Analyses of local coral colony traits indicated that multiple factors governed colony usage, including spacing between colonies on the benthos, colony position, and colony branching patterns. Nevertheless, the morphological and habitat characteristics that determine whether or not a colony is occupied by fish varied among coral species. These findings illuminate the realized niche of one of the most important and abundant reef fish families and provide a context for understanding how fish–coral interactions influence coral population and community level processes.

Tree Cover in the Surrounding Landscape Reduces Burrowing Owl (Athene cunicularia) Occupancy of Black-Tailed Prairie Dog Colonies in South Dakota

Burrowing Owl (Athene cunicularia) population declines have led to the owl's designation as a species of conservation concern in South Dakota. Burrowing Owls nest primarily in black-tailed prairie dog (Cynomys ludovicianus) colonies, but a significant proportion of colonies in South Dakota are not occupied by owls. We studied the influence of landscape-level habitat variables on colony selection by Burrowing Owls. We used call-playback surveys to document presence or absence of Burrowing Owls at 613 prairie dog colonies throughout western and central South Dakota. We used a geographic information system to calculate the percent cover of prairie dog colonies, grassland, cropland, and tree canopy in the surrounding landscape at four buffer sizes. We modeled Burrowing Owl occupancy of prairie dog colonies using logistic regression, and ranked models using Akaike's Information Criterion. All competitive models contained a tree-canopy-cover variable. Increasing tree canopy cover within 800 m and 1200 m of colony centers was associated with decreasing likelihood of occupancy by Burrowing Owls. Grassland, cropland, and prairie dog colony cover variables did not influence occupancy by Burrowing Owls, and these variables did not improve model fit or discrimination. In landscapes where the presence of nesting burrows is not a limiting factor, as in central and western South Dakota, Burrowing Owls occupied colonies based on the absence of trees. Trees provide habitat for avian and mammalian predators and reduce the available foraging area for Burrowing Owls around prairie dog colonies. Management for Burrowing Owls should include conserving prairie dog colonies in landscapes with few trees and preventing the establishment of trees near occupied colonies.

Citizen media and civil resistance in West Papua

This article charts the dynamics and trajectory of citizen media activism in West Papua’s fight for freedom which has progressed from not even registering in news rooms around the world to influencing sub-regional and regional bodies. Citizen media has played an essential role in this transformation. In 1998, when the Indonesian military massacred more than 100 unarmed West Papuans in Biak Island, it took weeks and months to get the news out. Back then West Papua was a military operations area (Daerah Operasi Militer). Few journalists were willing to risk travelling into the country to get the story out. In January 2016 West Papua remains an occupied colony. The Indonesian government still tries to curtail open access to West Papua for foreign journalists but courageous young people armed with cell phones are finding ways to bypass the government’s failed attempt at an informational blockade and it is making a difference. West Papuans are now members of the Melanesian Spearhead Group and the Pacific Island Forum is starting to take notice of the Pacific’s longest running self-determination and decolonisation struggle.

Persistence of black‐tailed prairie‐dog populations affected by plague in northern Colorado, USA

The spatial distribution of prairie dog (Cynomys ludovicianus) colonies in North America has changed from large, contiguous populations to small, isolated colonies in metapopulations. One factor responsible for this drastic change in prairie-dog population structure is plague (caused by the bacterium Yersinia pestis). We fit stochastic patch occupancy models to 20 years of prairie-dog colony occupancy data from two discrete metapopulations (west and east) in the Pawnee National Grassland in Colorado, USA, that differ in connectivity among suitable habitat patches. We conducted model selection between two hypothesized modes of plague movement: independent of prairie-dog dispersal (colony-area) vs. plague movement consistent with prairie-dog dispersal (connectivity to extinct colonies). The best model, which fit the data well (area under the curve [AUC]: 0.94 west area; 0.79 east area), revealed that over time the proportion of extant colonies was better explained by colony size than by connectivity to extinct (plagued) colonies. The idea that prairie dogs are not likely to be the main vector that spreads Y. pestis across the landscape is supported by the observation that colony extinctions are primarily caused by plague, prairie-dog dispersal is short range, and connectivity to extinct colonies was not selected as a factor in the models. We also conducted simulations with the best model to examine long-term patterns of colony occupancy and persistence of prairie-dog metapopulations. In the case where the metapopulations persist, our model predicted that the western metapopulation would have a colony occupancy rate approximately 2.5 times higher than that of the eastern metapopulation (-50% occupied colonies vs. 20%) in 50 years, but that the western metapopulation has -80% chance of extinction in 100 years while the eastern metapopulation has a less than 25% chance. Extinction probability of individual colonies depended on the frequency with which colonies of the same size class occurred in the metapopulation. Thus, the long-term persistence of prairie-dog metapopulations depended on specific details of the metapopulation.

Status and structure of the griffon vulture (Gyps fulvus) population in Crete

Griffon vulture (Gyps fulvus) population surveys were conducted during 1996–2002 in the island of Crete (Greece) to document population status and structure. Fieldwork was carried out during the breeding period when birds could be monitored in their colonies. Total population size was estimated at 379 individuals (range = 341–417) with adult birds comprising 63%. The breeding population was estimated at 141 pairs, which were distributed on an average in 23 colonies per year (range = 16–30) while the mean number of breeding pairs that laid eggs was 98 (range= 64–126). Crete thus supports the largest insular population of the species in the world and hosts 70–80% of the breeding population of the species in Greece. Population density was estimated at 6.9 individuals/100 km2, 2.6 breeding pairs/100 km2 and 1.8 nesting pairs/100 km2. The average home range of an occupied colony (i.e., breeding group) was estimated at ca. 204 km2 producing a theoretical foraging range of 8 km radius around the breeding cliff. No trends in the total number of individuals and breeding pairs appeared to exist, although significant differences in population size of individual colonies occurred between the years. The majority of the population was concentrated in small-sized colonies, which showed a low occupancy rate. The number of abandoned sites and the colonization of new ones could represent a shift of breeding pairs to alternative colonies provoked by local food abundance and conspesific attraction.

Sex and Age Composition of Spring-Hunted Eurasian Beaver in Norway

In Norway, Sweden, and Finland, most Eurasian beaver (Castor fiber) harvested are shot in April and May. Since beaver cannot be sexed or effectively aged under spring hunting conditions, hunters normally shoot the first animal seen. The consequences for population management are unknown. We tested the hypothesis that (1) the age composition and reproductive status of beaver shot did not vary significantly as individuals were removed sequentially from colonies, and (2) the sex ratio of shot beaver did not deviate significantly from a 50:50 distribution. We investigated the sex, age, and reproductive status of 126 beaver shot with rifles between 13 March and 15 May, 1997-1999, on a 242-km 2 land area in southeast Norway. The sex ratio of fetuses and all age groups did not deviate significantly from 50:50. The age ratio of the pooled bag was 14% juveniles, 22% 2 year olds, and 63% adults. Adults and pregnant females were more likely to be the first beaver shot from colonies. Pregnant females were probably vulnerable to hunters because of the increased nutritional demands of late pregnancy. Removal of an estimated 22-26% of the beaver population each year, of which 25% were pregnant females, was seemingly the main cause of the decline in occupied colonies from 57 to 31 (46%) during 3 years. The apparent susceptibility of adults and pregnant females to spring shooting should be considered when designing management plans for beaver.

Temporal in vitro expansion of the luminal lineage of human mammary epithelial cells achieved with the 3T3 feeder layer technique.

Human mammary epithelial cells from reduction mammoplasties were serially propagated in vitro from single cells and/or cell clusters using the NIH 3T3 cell feeder layer technique. In seven passages 46 cell population doublings, corrected for plating efficiency were achieved. The plating efficiency of epithelial cells in the primary culture was 0.2%. During subsequent passages it rose to 10-12% and decreased sharply towards the end of the culture life. In the third and fourth passages temporal prevalence of luminal cells was observed. The critical conditions for prevalence of the luminal phenotype were found to be the initial dissociation and optimum seeding density during subculturing. In primary cultures, after optimum dissociation of 0.15 cm3 mammary tissue with 0.05% collagenase A (Boehringher-Mannheim) in Eagle's MEM for 16 h at 37 degrees C, the yield on day 13 was 20 large colonies of 8-10 mm diameter. About 30% of the epithelial cells, which stained positively for the luminal cell marker cytokeratin 19, occupied colony centres. The remaining 70% were actin positive myoepithelial cells at the periphery. In subsequent passages, when using the optimum seeding density of 2 x 10(5) cells per 60 mm culture dish, the proportion of luminal cells gradually increased to 90% on day 35 in the fourth passage. A sudden rise in the proportion of rapidly growing myoepithelial cells to 65% was observed in the fifth passage. In the sixth and seventh passage small colonies were formed, most of which contained at least one keratin-19-positive (luminal) cell. Cells of human breast carcinomas are considered to be of luminal origin. Therefore, the described approach can be useful in studies of cell and molecular biology of mammary carcinomas.

Colony site selection and abandonment by least terns Sterna antillarum in New Jersey, USA

To develop habitat and management procedures to protect declining populations of least terns, colony site selection and abandonment by this species was investigated at 26 sites in New Jersey. Multivariate analysis was used to compare (1) colony sites to adjacent unused areas, (2) those located on beaches to dredge spoil sites and (3) abandoned to occupied colony sites. The presence of shells or pebbles in a sandy substrate, and short, sparse vegetation, were the habitat characteristics of New Jersey least tern colony sites most strongly correlated with colony site selection. Dredge spoil sites had significantly greater evidence of human disturbance, distance to water, and proportion of coarse particles in the substrate than beach sites. These differences may have contributed to the smaller colonines and greater colony turnover rates at spoil sites relative to beach sites. Overall, abandoned colony site characteristics did not differ significantly from occupied sites. However, human disturbance, over-growth of vegetation, predation, and flooding were all prevalent at colonies prior to abandonment. The results of this study suggest techniques for habitat management of both least and little terns.