Observed Isotope Effect Research Articles

Separation of isotopologues of amphetamine with various degree of deuteration on achiral and polysaccharide-based chiral columns in high-performance liquid chromatography

Hydrogen/deuterium (H/D) isotope effects are not unusual in chromatography and such phenomena have been observed in both gas- and liquid-phase separations. Despite the numerous reports on this topic, the understanding of mechanisms and the underlying noncovalent interactions at play remains rather challenging. In our recent study, we reported baseline separation of isotopologoues of some amphetamine (AMP) derivatives on achiral and polysaccharide-based chiral columns, as well as some correlations between the degree of separation of enantiomers and isotopologues on (the same) polysaccharide-based chiral column(s). Following our previous findings on isotope effects in high-performance liquid chromatography, we report herein a comparative study on the isotope effects observed with AMP and methamphetamine (MET). The impact of some pivotal factors such as the number of deuterium atoms part of AMP isotopologues, the structure of its isotopomers, the chemical structure of the achiral and chiral stationary phases used in this study, and the use of methanol- vs acetonitrile-containing mobile phases on the isotope effects was examined and discussed. Quantitative correlations between the observed isotope effects and the enantioselectivity of the chiral columns used are also shortly discussed. Furthermore, considering the chromatographic results as benchmark experimental data, we attempted to elucidate the molecular bases of the observed phenomena using quantum mechanics calculations.

Nuclear quantum effects in phase transition between Ice VII and Ice X.

The theoretical modeling of high-pressure ice remains challenging owing to the complexity in accurately reflecting its properties attributable to nuclear quantum effects. To explore the nuclear quantum effects of the phase transition between Ice VII and Ice X, we introduce an approach based on abinitio path-integral molecular dynamics. The results indicate that quantum effects facilitate the phase transition, with the observed isotope effects consistent with the experimental outcomes. We demonstrate that quantum effects manifest differently across ice phases: In Ice VII, quantum effects reduce the pressure through the centralization of protons. In contrast, in Ice X, quantum effects increase the pressure owing to the increased kinetic energy of zero-point vibration.

Experimental and Theoretical Studies on Stereomutation Through gem‐Difluorocyclopropanylide Intermediates

AbstractA desilylation process of optically active silyl‐substituted gem‐difluorocyclopropanes with tetrabutylammonium fluoride (TBAF) showed a substantial reduction of enantiopurity of the resultant gem‐difluorocyclopropanes even at ambient temperatures. The electron‐withdrawing aryl substituent at the 3‐position in the 1‐silyl‐2,2‐difluorocyclopropane system accelerated the racemization, indicating a correlation with the stability of the anionic intermediates. The plausible racemization pathway through homolytic cleavage of the distal bond in gem‐difluorocyclopropane is inconsistent with the experimental results because the high energy of >34 kcal/mol is required for generating the open‐shell 2,2‐difluoropropane‐1,3‐diyl skeleton. The DFT studies using the anionic 2,2‐difluoromethyl‐3‐phenylcyclopropanylide intermediate supported the alternative isomerization pathway through the intramolecular migration of hydrogen and the resultant thermodynamically stable 2,2‐difluoromethyl‐1‐phenylcyclopropanylide anion could facilitate the racemization process at the stereocenter. Although the transition state indicated considerable activation energies, the high frequency of imaginary vibration should correlate with a barrier of a very narrow width enabling quantum tunneling under the H‐migration step. The observed isotope effect is compatible with the proposed mechanism through the intramolecular H‐migration.

Carbon isotope effects in the sorption of chlorinated ethenes on biochar and activated carbon

As an alternative to activated carbon, biochar is a promising, environmentally friendly sorbent that can be used to remove organic groundwater pollutants, such as chlorinated ethenes (CEs). Stable isotope fractionation in biofilters is used to quantify pollutant degradation and to distinguish degradation from pollutant sorption on e.g. biochar. However, the sorption of CEs on biochar, and the potential abiotic fractionation processes remain to be tested. The sorption process of CEs and ethene on activated carbon and biochar was investigated with regard to the isotope effects for the differentiation from microbial degradation processes. Results from physical and chemical characterization of biochar indicated that biochar feedstock and pyrolysis conditions determined sorption performance depending on the surface chemistry and the pore size distribution of the coarse sorbent particles. The sorption capacity of the activated carbon was significantly higher with highly chlorinated ethenes, but similar to the biochars with low chlorination. Apparent carbon isotope fractionation factors (ε) of +0.1 to −4.4 ‰ were found above measurement uncertainties of GC/IRMS. The extent of isotope enrichment of the 13C bearing isotopologues in the residual aqueous phase (ε < 0) was characteristic for individual pairs of pollutant and sorbent material and could be related to pore-filling processes limited by the micropore size distribution of sorbent materials and the chemical properties of sorbed pollutants. Especially the large isotope fractionation during the sorption of ethene led to the assumption that diffusion processes within the pore matrix of the sorbent particles contributed to the observed isotope effects, but should still be considered a property of sorption. Concluding on the results indicated that sorption processes can have a significant contribution to carbon isotope fractionation in CEs and ethene. These should not be neglected in the evaluation of biofilters for groundwater purification, in which CEs are simultaneously degraded by microbes.

Testing a prediction model for the H-mode density pedestal against JET-ILW pedestals

The neutral ionisation model proposed by Groebner et al (2002 Phys. Plasmas 9 2134) to determine the plasma density profile in the H-mode pedestal, is extended to include charge exchange processes in the pedestal stimulated by the ideas of Mahdavi et al (2003 Phys. Plasmas 10 3984). The model is then tested against JET H-mode pedestal data, both in a ‘standalone’ version using experimental temperature profiles and also by incorporating it in the Europed version of EPED. The model is able to predict the density pedestal over a wide range of conditions with good accuracy. It is also able to predict the experimentally observed isotope effect on the density pedestal that eludes simpler neutral ionization models.

Exploring Mechanisms of Biotic Chlorinated Alkane Reduction: Evidence of Nucleophilic Substitution (SN2) with Vitamin B12.

Chlorinated alkanes are notorious groundwater contaminants. Their natural reductive dechlorination by microorganisms involves reductive dehalogenases (RDases) containing cobamide as a cofactor. However, underlying mechanisms of reductive dehalogenation have remained uncertain. Here, observed products, radical trap experiments, UV-vis, and mass spectra demonstrate that (i) reduction by cobalamin (vitamin B12) involved chloroalkyl-cobalamin complexes (ii) whose formation involved a second-order nucleophilic substitution (SN2). Dual element isotope analysis subsequently linked insights from our model system to microbial reductive dehalogenation. Identical observed isotope effects in reduction of trichloromethane by Dehalobacter CF and cobalamin (Dehalobacter CF, εC = -27.9 ± 1.7‰; εCl = -4.2 ± 0.‰; λ = 6.6 ± 0.1; cobalamin, εC = -26.0 ± 0.9‰; εCl = -4.0 ± 0.2‰; λ = 6.5 ± 0.2) indicated the same underlying mechanism, as did identical isotope effects in the reduction of 1,2-dichloroethane by Dehalococcoides and cobalamin (Dehalococcoides, εC = -33.0 ± 0.4‰; εCl = -5.1 ± 0.1‰; λ = 6.5 ± 0.2; cobalamin, εC = -32.8 ± 1.7‰; εCl = -5.1 ± 0.2‰; λ = 6.4 ± 0.2). In contrast, a different, non-SN2 reaction was evidenced by different isotope effects in reaction of 1,2-dichloroethane with Dehalogenimonas (εC = -23.0 ± 2.0‰; εCl = -12.0 ± 0.8‰; λ = 1.9 ± 0.02) illustrating a diversity of biochemical reaction mechanisms manifested even within the same class of enzymes (RDases). This study resolves open questions in our understanding of bacterial reductive dehalogenation and, thereby, provides important information on the biochemistry of bioremediation.

Overview of the isotope effects in the ASDEX Upgrade tokamak

In recent years, measurements on the ASDEX Upgrade tokamak and modelling performed for plasmas with hydrogen (H) and deuterium (D) as the main gas have improved our understanding of the ion mass dependencies in fusion plasmas. The observed isotope effects can be explained with established physics processes which highlight the importance of treating heat transport with coupled electron and ion heat channels. In the core of electron heated L-mode plasmas, the mass dependence of the electron–ion equipartition results in a reduction of with increasing ion mass. Combined with higher profile stiffness in the ions compared to the electrons, this results in improved core confinement for higher ion masses. At the edge of L-mode plasmas where a higher collisionality is observed, parallel electron dynamics is fundamental for turbulence. The parallel electron dynamics term in the gyrokinetic equations directly depends on , resulting in a different kinetic response with different ion mass. Higher turbulent fluxes are expected with lower ion mass. This is consistent with the difference in observed in the experiment. The mass dependence of turbulent transport in the L-mode edge has direct consequences for the L–H transition. More heating power is required to enter the H-mode at lower mass (). This is expected if the critical E × B shearing rate is important for the transition from L to H mode. In the H-mode pedestal, remains important to regulate the turbulent transport. The electrons do not contribute to and the enhanced equipartition for lower ion masses causes a shift from the ion channel to the electron channel in the absolute heat fluxes. Consequently, the inter edge localised mode (ELM) transport is found to be higher with lower isotope mass. This enhanced transport in H can prevent the pedestal from reaching the peeling–ballooning stability boundary with engineering parameters where D plasmas are peeling–ballooning unstable. Increasing the triangularity reduces the inter ELM transport in H stronger than in comparable D plasmas. For matched pedestal top and matched heat sources, the core heat transport is found to be similar for H and D when the fast-ion content is low. When ion temperature gradient turbulence stabilisation by fast ions becomes relevant, the mass dependent fast-ion slowing down results in higher fast-ion content in D and therefore in a reduction of ion heat transport in the core. Then, even for matched pedestals .

Isotope effects in x-ray absorption spectra of liquid water

The isotope effects in x-ray absorption spectra of liquid water are studied by a many-body approach within electron-hole excitation theory. The molecular structures of both light and heavy water are modeled by path-integral molecular dynamics based on the advanced deep-learning technique. The neural network is trained on ab initio data obtained with SCAN density functional theory. The experimentally observed isotope effect in x-ray absorption spectra is reproduced semiquantitatively in theory. Compared to the spectrum in normal water, the blueshifted and less pronounced pre- and main-edge in heavy water reflect that the heavy water is more structured at short- and intermediate-range of the hydrogen-bond network. In contrast, the isotope effect on the spectrum is negligible at post-edge, which is consistent with the identical long-range ordering in both liquids as observed in the diffraction experiment.

Carbon isotope effects in the artificial photosynthesis reactions catalyzed by nanostructured Co/CoO

Although carbon dioxide (CO2) and water (H2O) have been converted into hydrocarbons, ranging from pentane (C5H12) to octadecane (C18H38) through an artificial photosynthesis reaction catalyzed by nanostructured Co/CoO, the mechanism of the reaction is not very clear. In this work, the isotope effect of carbon is studied by conducting the 13C/12C competition experiments using an equal molar ratio of 13CO2 and 12CO2 as the reagents. It is shown that the dissociation of 12CO2 is easier than that of 13CO2, and the same carbon isotope atoms have a relatively higher probability to bond together to form the hydrocarbon chains. The quantum mechanical analysis of the observed isotope effect helps us to better understand the mechanism for hydrocarbon synthesis.

How coverage influences thermodynamic and kinetic isotope effects for H2/D2 dissociative adsorption on transition metals

Hydrogen isotope effects are influenced by adsorbate coverage: at high coverages, isotope effects are lower than at low coverages. This helps to rationalize observed isotope effects, allowing more precise elucidation of reaction mechanisms.

Influence of Dielectric Environment upon Isotope Effects on Glycoside Heterolysis: Computational Evaluation and Atomic Hessian Analysis.

Isotope effects depend upon the polarity of the bulk medium in which a chemical process occurs. Implicit solvent calculations with molecule-shaped cavities show that the equilibrium isotope effect (EIE) for heterolysis of the glycosidic bonds in 5'-methylthioadenosine and in 2-(p-nitrophenoxy)tetrahydropyran, both in water, are very sensitive in the range 2 ≤ ε ≤ 10 to the relative permittivity of the continuum surrounding the oxacarbenium ion. However, different implementations of nominally the same PCM method can lead to opposite trends being predicted for the same molecule. Computational modeling of the influence of the inhomogeneous effective dielectric surrounding a substrate within the protein environment of an enzymic reaction requires an explicit treatment. The EIE (KH/KD) for transfer of cyclopentyl, cyclohexyl, tetrahydrofuranyl and tetrahydropyranyl cations from water to cyclohexane is predicted by B3LYP/6-31+G(d) calculations with implicit solvation and confirmed by B3LYP/6-31+G(d)/OPLS-AA calculations with averaging over many explicit solvation configurations. Atomic Hessian analysis, whereby the full Hessian is reduced to the elements belonging to a single atom at the site of isotopic substitution, reveals a remarkable result for both implicit and explicit solvation: the influence of the solvent environment on these EIEs is essentially captured completely by only a 3 × 3 block of the Hessian, although these values must correctly reflect the influence of the whole environment. QM/MM simulation with ensemble averaging has an important role to play in assisting the meaningful interpretation of observed isotope effects for chemical reactions both in solution and catalyzed by enzymes.

Microbial oxidation of tri-halogenated phenols - Multi-element isotope fractionation

The tri-halogenated phenols, 2,4,6-trichlorophenol (TCP) and 2,4,6-tribromophenol (TBP), are known as groundwater contaminants. Indigenous bacteria may degrade these compounds aerobically or anaerobically, with the aerobic process initiated by ring hydroxylation at the para position. Stable isotope analysis can be proposed as a tool for determining biodegradation process of these compounds in the environment. However, to date isotope fractionation in microbial oxidation of trihalogenated phenols has not been reported. This work aimed to investigate carbon and halogen (chlorine or bromine) isotope effects associated with the process by two microbial strains: Achromobacter piechaudii strain TBPZ which is capable of degrading both TCP and TBP, and Ralstonia eutropha strain JMP 134 which was extensively studied in the past to characterize the TCP oxidation mechanism. Low carbon isotope effects were observed in all degradation experiments. Opposite fractionation trends were detected for TCP and TBP by strain TBPZ (εC = −0.51 ± 0.28‰ and εC = +0.68 ± 0.26‰, respectively). Strain JMP presented a low inverse carbon isotope effect for TCP oxidation (εC = +0.26 ± 0.13‰), contrary to that of strain TBPZ. For the halogen atoms, low yet significant normal halogen isotope effects were detected in all cases (−0.49 to −1.43‰ for chlorine, and −0.42‰ for bromine). The results suggest that the observed isotope effects do not reflect the ring hydroxylation. Instead, they likely represent rate-limiting steps preceding the catalysis of hydroxylation. Dual-element isotope effects observed in this study did not enable distinguishing between oxidation and reduction of TCP. The oxidation and reduction dual-element trends were distinct for TBP. However, it is uncertain if this difference can be extrapolated from the laboratory to the field, since the isotope effects in TBP degradation are strongly influenced by slow steps prior to hydroxylation.

Quantum-chemical analysis of the thermodynamic isotope effect in quasi-one-dimensional H-bonded Pb(H/D)PO4 ferroelectrics

The thermodynamics of the structural phase transition of H-bonded ferroelectric materials, Pb(H/D)PO4, were considered in terms of the pseudo-spin Ising model with inclusion of tunneling and longrange effects. The pseudo-spin Hamiltonian parameters needed for analysis of the transition were determined by a procedure based on an independent quantum chemical method. A simplified scheme for the selection of model clusters was proposed, which allows the application of various quantum chemical methods, including high-level methods (CCSD/6-311+G** and so on), in the calculations of double-well potential profiles and Slater parameters. The calculation results were discussed in terms of two statistic models: molecular field approximation (MFA) and Bethe cluster method (BCM). The theoretical estimates of critical transition temperature for both systems are discussed and it is shown that the (semi)quantitative reproduction of experimental data is possible only in terms of BCM taking into account the tunneling effects. The explanation is given for the observed isotope effect caused by very pronounced increase in the critical transition temperature upon deuteration (ΔTс ≈ 140 K). The crucial role belongs to the difference between tunneling effects in the ferroelectric crystals in question. It is emphasized that the observed differences between the crystal lattice and H/D bond geometries, including the mutual orientation of the bonds, must be accurately included in the calculations.

Evidence for Electron-Hole Pair Excitation in the Associative Desorption of H2 and D2 from Au(111).

The dissociative adsorption reaction of hydrogen on noble metals is believed to be well-described within the Born-Oppenheimer approximation. In this work, we have experimentally derived translational energy distributions for selected quantum states of H2 and D2 formed in associative desorption reactions at a Au(111) surface. Using the principle of detailed balance, we compare our results to theory carried out at the same level of sophistication as was done for the reaction on copper. The theory predicts translational excitation that is much higher than is seen in experiment and fails to reproduce the experimentally observed isotope effect. The large deviations between experiment and theory are surprising because, for the same reactions occurring on Cu(111), a similar theoretical strategy agreed with experiment, yielding "chemical accuracy". We argue that electron-hole pair excitation is more important for the reaction on gold, an effect that may be related to the reaction's later transition state.

Negative Isotope Effect on Field‐Effect Hole Transport in Fully Substituted13C‐Rubrene

Isotopic substitution is a useful method to study the influence of nuclear motion on the kinetics of charge transport in semiconductors. However, in organic semiconductors, no observable isotope effect on field‐effect mobility has been reported. To understand the charge transport mechanism in rubrene, the benchmark organic semiconductor, crystals of fully isotopically substituted rubrene,13C‐rubrene (13C42H28), are synthesized and characterized. Vapor‐grown13C‐rubrene single crystals have the same crystal structure and quality as native rubrene crystals (i.e., rubrene with a natural abundance of carbon isotopes). The characteristic transport signatures of rubrene, including room temperature hole mobility over 10 cm2V−1s−1, intrinsic band‐like transport, and clear Hall behavior in the accumulation layer of air‐gap transistors, are also observed for13C‐rubrene crystals. The field‐effect mobility distributions based on 74 rubrene and13C‐rubrene devices, respectively, reveal that13C isotopic substitution produces a 13% reduction in the hole mobility of rubrene. The origin of the negative isotope effect is linked to the redshift of vibrational frequencies after13C‐substitution, as demonstrated by computer simulations based on the transient localization (dynamic disorder) scenario. Overall, the data and analysis provide an important benchmark for ongoing efforts to understand transport in ordered organic semiconductors.

H/D isotope effect for hydrogen solubility in BaZr0.9Y0.1O3–δ: Chemical expansion studies

A novel method for the determination of the H/D isotope effect in hydrogen solubility in proton-conducting oxides is proposed. The method is based on comparison of the chemical expansion under heavy and regular water vapor pressures. The theoretical approach has been developed for acceptor-doped perovskites with the potential extension to other nonstoichiometric oxides. Dilatometric measurements of the expansion of BaZr0.9Y0.1O3–δ ceramic samples equilibrated with the atmospheres containing H2O or D2O vapors have been performed. The ratio of concentrations of protons and deuterons incorporated under equal H2O and D2O pressures and other identical external conditions have been found. The observed isotope effect in hydrogen solubility is substantial, its magnitude and behavior agree with our theoretical predictions for proton-conducting oxides.

Isotope effect in superconducting n-doped SrTiO3.

We report the influence on the superconducting critical temperature Tc in doped SrTiO3 of the substitution of the natural 16O atoms by the heavier isotope 18O. We observe that for a wide range of doping this substitution causes a strong (~50%) enhancement of Tc. Also the magnetic critical field Hc2 is increased by a factor ~2. Such a strong impact on Tc and Hc2, with a sign opposite to conventional superconductors, is unprecedented. The observed effect could be the consequence of strong coupling of the doped electrons to lattice vibrations (phonons), a notion which finds support in numerous optical and photo-emission studies. The unusually large size of the observed isotope effect supports a recent model for superconductivity in these materials based on strong coupling to the ferroelectric soft modes of SrTiO3.

Controlling Selectivity by Controlling Energy Partitioning in a Thermal Reaction in Solution

The comparison of experimental and predicted kinetic isotope effects in the α-cleavage of alkoxy radicals is used here to judge the applicability of statistical rate theories. It is found that the governing rate theory and the statistical versus nonstatistical nature of the cleavage depend on the cleavage barrier and how much energy is imparted to the radical. The latter can then be controlled by changing the size of substituents in the system. With a large alkyl group substituent, the vibrational energy of the alkoxy radical is increased, but this energy is not statistically distributed, leading to a lower isotope effect than predicted by statistical theories. The observed isotope effect can be approximately rationalized using a semistatistical localized RRKM model.

13C Kinetic Isotope Effect of the Pudovik Reaction

13C kinetic isotope effect (KIE) was determined by means of 13C NMR for the carbonyl atom in 2-nitrobenzaldehyde in its reaction with 2H-2-oxo-5,5-dimethyl-4-phenyl-1,3,2-dioxaphosphorinane in acetonitrile at 25°C. The observed isotope effect k12/k13 = 1.0238 ± 0.0031 evidences that the formation of the P‒C bond in the Pudovik reaction catalyzed by triethylamine is less advanced than the π-bond breakage of the aldehyde carbonyl group.

Oxygen isotope fractionation effects in soil water via interaction with cations (Mg, Ca, K, Na) adsorbed to phyllosilicate clay minerals

Summary In isotope-enabled hydrology, soil and vadose zone sediments have been generally considered to be isotopically inert with respect to the water they host. This is inconsistent with knowledge that clay particles possessing an electronegative surface charge and resulting cation exchange capacity (CEC) interact with a wide range of solutes which, in the absence of clays, have been shown to exhibit δ 18 O isotope effects that vary in relation to the ionic strength of the solutions. To investigate the isotope effects caused by high CEC clays in mineral–water systems, we created a series of monominerallic-water mixtures at gravimetric water contents ranging from 5% to 32%, consisting of pure deionized water of known isotopic composition with homoionic (Mg, Ca, Na, K) montmorillonite. Similar mixtures were also created with quartz to determine the isotope effect of non-, or very minimally-, charged mineral surfaces. The δ 18 O value of the water in these monominerallic soil analogs was then measured by isotope ratio mass spectrometry (IRMS) after direct headspace CO 2 equilibration. Mg- and Ca-exchanged homoionic montmorillonite depleted measured δ 18 O values up to 1.55‰ relative to pure water at 5% water content, declining to 0.49‰ depletion at 30% water content. K-montmorillonite enriched measured δ 18 O values up to 0.86‰ at 5% water content, declining to 0.11‰ enrichment at 30% water. Na-montmorillonite produces no measureable isotope effect. The isotope effects observed in these experiments may be present in natural, high-clay soils and sediments. These findings have relevance to the interpretation of results of direct CO 2 -water equilibration approaches to the measurement of the δ 18 O value of soil water. The adsorbed cation isotope effect may bear consideration in studies of pedogenic carbonate, plant-soil water use and soil-atmosphere interaction. Finally, the observed isotope effects may prove useful as molecular scale probes of the nature of mineral–water interactions.