Taking the Paleogene Shahejie Formation in Nanpu sag of Bohai Bay Basin as an example, this study comprehensively utilizes seismic, mud logging, well logging, physical property analysis and core thin section data to investigate the metamorphic reservoir formed by contact metamorphism after igneous rock intrusion. (1) A geological model of the igneous intrusion contact metamorphic system is proposed, which can be divided into five structural layers vertically: the intrusion, upper metamorphic aureole, lower metamorphic aureole, normal sedimentary layers on the roof and floor. (2) The intrusion is characterized by xenoliths indicating intrusive facies at the top, regular changes in rock texture and mineral crystallization from the center to the edge on a microscopic scale, and low-angle oblique penetrations of the intrusion through sedimentary strata on a macroscopic scale. The metamorphic aureole has characteristics such as sedimentary rocks as the host rock, typical palimpsest textures developed, various low-temperature thermal metamorphic minerals developed, and medium-low grade thermal metamorphic rocks as the lithology. (3) The reservoir in contact metamorphic aureole has two types of reservoir spaces: matrix pores and fractures. The matrix pores are secondary “intergranular pores” distributed around metamorphic minerals after thermal metamorphic transformation in metasandstones. The fractures are mainly structural fractures and intrusive compressive fractures in metamudstones. The reservoirs generally have three spatial distribution characteristics: layered, porphyritic and hydrocarbon impregnation along fracture. (4) The distribution of reservoirs in the metamorphic aureole is mainly controlled by the intensity of thermal baking. Furthermore, the distribution of favorable reservoirs is controlled by the coupling of favorable lithofacies and thermal contact metamorphism, intrusive compression and hydrothermal dissolution. The proposal and application of the geological model of the intrusion contact metamorphic system are expected to promote the discovery of exploration targets of contact metamorphic rock in Nanpu sag, and provide a reference for the study and exploration of deep contact metamorphic rock reservoirs in the Bohai Bay Basin.