Nutrient Cycling In Aquatic Ecosystems Research Articles

Spatiotemporal variations of plankton communities in different water bodies of the Yellow River: Structural characteristics, biogeographic patterns, environmental responses, and community assembly

Phytoplankton and zooplankton serve as critical indicators of aquatic ecological health, playing vital roles in nutrient cycling in aquatic ecosystems. Nevertheless, their biogeographic patterns and community assembly remain poorly understood, especially in large-scale watersheds. In this study, we collected plankton samples from typical reservoirs and river sections along the Yellow River during spring and summer to investigate their spatiotemporal dynamics, geographic patterns, and community assembly. Our results revealed that the diversity and composition of plankton communities varied with season significantly, showcasing higher diversity and density during summer. Distance-decay relationships highlighted significant correlations between environmental gradients and plankton community heterogeneity in both seasons, whereas spatial factors exerted a more prominent effect on phytoplankton during summer. Water temperature, dissolved oxygen, chemical oxygen demand, and total suspended sediments emerged as the main environmental attributes affecting plankton composition, as illustrated by Mantel’s test. Both ecological niche differentiation and dispersal limitation contributed to plankton community construction, with ecological niche differentiation being more dominant in spring and dispersal limitation more influential on phytoplankton in summer. These findings enhance our understanding of the structural characteristics of plankton communities in the large-scale Yellow River, shedding light on their biogeographic patterns and community construction mechanisms within large river ecosystems.

First report of microbial symbionts in the digestive system of shipworms; wood boring mollusks

Shipworms, historically known for their destruction of wooden ships and coastal structures, play a key role in carbon and nutrient cycling in aquatic ecosystems. Despite extensive research, the exact mechanisms underlying their ability to digest wood have remained elusive, particularly regarding the degradation of lignin, a major component of wood that resists breakdown. Here we employ a combination of microbial culture, metagenomics, and FISH-probe microscopy analyses to explore previously overlooked aspects of their digestive system. Specifically, we identify the presence of bacterial symbionts within the typhlosole, a specialized structure within the main wood digestive organ (cecum), challenging the long-held belief that shipworm foreguts are nearly sterile environments. The discovery of Alteromonas species in bacterial clusters within the typhlosole suggests a symbiotic relationship that may play a crucial role in the digestion of woody substrates, offering a potential explanation for the shipworm's ability to degrade lignocellulose without ligninases from the host or gill symbionts. These findings provide insight into the digestive physiology and host defense of shipworms, but also suggests that the typhlosole in other related organisms might also harbor symbionts. This study also opens new insights into research into the ecological and biotechnological applications of shipworms and their gut symbionts, enhancing our understanding of lignocellulose degradation in marine environments.

Fine-tuning RNA extraction protocols for polysaccharide-rich freshwater red algae (Rhodophyta).

Freshwater red algae are important primary producers, widely distributed, contributing significantly to nutrient cycling in aquatic ecosystems. Recent studies have focused on identifying the effect of different environmental conditions such as light on the gene expression in photosynthesis pathways. However, obtaining the necessary RNA quantity and quality for sequencing from these algae has been challenging. Although RNA extractions have been optimized for model organisms, RNA extraction for non-model organisms, such as gelatinous (polysaccharide-rich) red algae, requires considerable troubleshooting. The common freshwater red alga, Batrachospermum gelatinosum , was used to test protocols. The extraction efficiency of various sample disruption methods in combination with seven RNA extraction kits was compared. Using a 2-minute disruption procedure with a modification of TRIzol ™ Plus RNA Purification Kit (PureLink ™ RNA Mini Kit + Trizol ™ ) protocol resulted in significantly higher RIN scores (p < 0.05) and high RNA concentration, compared to other methods. The fine-tuned protocol yielded quality RNA (RIN>7) in high concentrations for subsequent sequencing.

A rapid field-ready electrical biosensor consisting of bismuthine-derived Au island decorated BiOCl nanosheets for Raphidiopsis raciborskii detection in freshwater.

Cyanobacteria play an essential role in nutrient cycling in aquatic ecosystems. However, certain species adversely affect the environment and human health by causing harmful cyanobacterial algal blooms (cyanoHABs) and producing cyanotoxins. To address this issue, continuous cyanoHAB monitoring has been considered; however, a gold standard has not yet been established. In this study, we aimed to develop a dual DNA-targeting capacitive-type biosensor for rapid field-ready monitoring of Raphidiopsis raciborskii, a causative species of cyanoHAB. To enhance the sensing signal, a plate-like Au-BiOCl nanocomposite was synthesized using a spontaneous carbonation process without additional additives. The alternating-current electrothermal flow (ACEF) technique was applied to enable rapid DNA and probe binding within 10 min. The limits of detection (LODs) for R. raciborskii RubisCO large subunit (rbcL) and RNA polymerase beta subunit (rpoB) genes diluted in deionized (DI) water were 4.89 × 10-17 and 3.89 × 10-17 M, respectively. Furthermore, the LODs of R. raciborskii rbcl and rpoB diluted in freshwater containing HAB were 2.55 × 10-16 and 3.84 × 10-16 M, respectively, demonstrating the field-ready applicability of the device. The fabricated cyanobacterial DNA-sensing platform enabled powerful species-specific detection using a small sample volume and low target concentration without a nucleic acid amplification step, dramatically reducing the detection time. This study has considerable implications for detecting HABs, early warning systems, and species-specific environmental monitoring technology.

Phylogeny, taxonomy, and biogeography of the Sphaeriinae (Bivalvia: Sphaeriidae)

Abstract The subfamily Sphaeriinae is a diverse and ecologically significant group of freshwater invertebrates, playing a keystone role in the energy flow and nutrient cycling in aquatic ecosystems. Despite a long history of its study, the taxonomic structure and species content of this group are a matter of ongoing disputes between malacologists. We clarify the taxonomy, distribution, and evolutionary biogeography of the Sphaeriinae around the world based on the largest dataset of DNA sequences of these clams ever accumulated, which includes the data on specimens collected from various continents and countries around the globe. Our 16S rRNA and two-locus phylogenies reveal that the Sphaeriinae is a monophyletic group, containing at least seven genus-level clades: Sphaerium Scopoli, 1777, Pisidium C. Pfeifffer, 1821 (s.s.), Euglesa Jenyns, 1832, Odhneripisidium Kuiper, 1962, Conventus Pirogov &amp; Starobogatov stat. nov., 1974, ‘Pisidium’ sterkianum group, and Hindupisidium Vinarski &amp; Bespalaya gen. nov. Our 16S rRNA phylogenetic tree contains 80 well-supported clades corresponding to the putative species-level taxa. Four species new to science are described here: Euglesa kolymensis Bespalaya, Aksenova &amp; Bolotovsp. nov., Euglesa kyrgyzica Bespalaya, Aksenova, Kondakov &amp; Palatovsp. nov., Euglesa moroccana Bespalaya, Vinarski, Aksenova, Mabrouki, Kondakov &amp; Palatovsp. nov., Odhneripisidium caucasus Bespalaya, Vinarski, Aksenova, Kondakov &amp; Palatovsp. nov. Our fossil-calibrated phylogeny and generalized biogeographic model indicate that the most recent common ancestor of the Sphaeriidae could have originated somewhere within a broad area covering China near the Lower Cretaceous boundary.

Bacterial Community Composition and Function of Tropical River Ecosystem along the Nandu River on Hainan Island, China.

Microorganisms play a pivotal role in nutrient cycling in aquatic ecosystems. Understanding bacterial diversity and its functional composition are crucial for aquatic ecology and protection. We investigated the bacterial community structure using 16S rRNA gene amplicons high-throughput sequencing in this study. Results showed that 105 amplicon sequence variants (ASVs) account for 43.8% of the total sequences shared by the Nandu River's lower, middle, and upper reach and the Songtao Reservoir. The dominant bacterial phylum in the Nandu River and its connected Songtao Reservoir were Proteobacteria and Actinobacteriota, respectively. The highest Chao1 and Shannon index values were found in the lower reach of the Nandu River. Beta diversity analysis showed the divergence in bacterial communities in the Nandu River and Songtao Reservoir, but not in different reaches. Among the water properties, based on the Mantel test, dissolved oxygen, total nitrogen, and nitrite significantly affected the bacterial communities. The functional profiles predicted by Tax4Fun2 showed that metabolism was the most abundant function group. The relative abundance of genetic information processing was significantly higher in the Songtao Reservoir than in the Nandu River, while the relative abundance of human diseases was significantly lower in the Songtao Reservoir than in the Nandu River. The appearance of the xenobiotics biodegradation and metabolism function group requires us to pay more attention to possible water pollution, especially at the upper reach of the Nandu River.

Optimization of Preservation Methods Provides Insights into Photosynthetic Picoeukaryotes in Lakes.

ABSTRACTAs the key contributor to plankton biomass and nutrient cycling in aquatic ecosystems, photosynthetic picoeukaryotes (PPEs) have been recently investigated in freshwater ecosystems. However, the limited access to remote areas creates challenges for PPE sample preservation before sorting and counting by flow cytometry (FCM) in the laboratory. Here, we explored the effects of different preservation methods on the PPE community by combining FCM sorting and high-throughput sequencing. Our results showed that dimethyl sulfoxide (DMSO) cryoprotection could destroy the fluorescence and cell structure of the PPEs, making the subsequent FCM analysis and sorting difficult. Aldehyde fixation maintained the PPE fluorescence, and the fixed samples were of sufficient quality for abundance analysis and sorting by FCM. However, the sequencing results showed that, after preservation by aldehydes, the proportion of PPEs dramatically decreased to approximately 10%, in comparison to 90% in the fresh samples, and the sequences of Ascomycota significantly increased. In contrast, preservation with Pluronic F68 (F68) not only could maintain the PPE abundance close to the initial value but also could keep the PPE community similar to that in the fresh samples over a storage time of 6 months. Thus, F68 cryopreservation is a suitable preservation method for PPE communities from freshwater lakes.IMPORTANCE PPEs contribute significantly to primary productivity in freshwater ecosystems. The combination of FCM sorting and high-throughput sequencing has been shown to be a powerful approach and can largely improve our view of the PPE diversity. However, the water samples could not be counted and sorted immediately after sampling from many lakes due to the inaccessibility of FCM in the field. Thus, the comparison of different preservation methods that allow subsequent analysis of the community structure by high-throughput sequencing is an urgent need. Our results indicated that F68 cryopreservation could maintain the PPE abundance close to the initial value and keep the community similar to that in the fresh samples over a storage time of 6 months.

Diversity and network structure of epiphytic bacterial communities on different submerged macrophytes

沉水植物叶表附着大量细菌,与沉水植物构成了复杂的共生体系.叶片附着细菌是水生态的重要组成部分,能影响沉水植物自身生长和水体物质循环过程.目前,对于沉水植物多样性对植物叶片附着细菌群落的影响知之甚少.本研究比较了不同沉水植物物种多样性对浮游细菌和叶片附着细菌群落的影响,同时探究不同植物——苦草(Vallisneria natans)、穗状狐尾藻(Myriophyllum spicatum)、微齿眼子菜(Potamogeton maackianus)和黑藻(Hydrilla verticillata)叶片附着细菌的群落结构和多样性特征.结果表明,浮游细菌和叶片附着细菌的群落α多样性和β多样性具有显著差异.与单一植物物种体系相比,高植物物种多样性体系中植物叶片附着细菌群落α多样性较高.在高植物物种多样性体系中,黑藻叶片附着细菌群落的α多样性显著较高而β多样性显著较低,苦草叶片附着细菌群落的α多样性较低.沉水植物叶片附着细菌群落优势菌群属于变形菌门(Proteobacteria)和拟杆菌门(Bacteroidetes).高植物物种多样性体系中苦草的物种共现网络最具模块性.嗜甲基菌(g_Methylophilus)、红杆菌(f_Rhodobacter)、黄杆菌(g_Flavobacterium)是物种共现网络的关键物种.本文研究植物物种多样性对淡水湖泊细菌群落结构的影响,并强调宿主植物对附着细菌群落的重要选择作用,加深对细菌群落在水生植物叶片定殖机制的理解.;Epiphytic bacteria, adhering to the leaf surface of aquatic submerged macrophytes, develop a complex symbiotic relationship with submerged macrophytes. Epiphytic bacteria are an important component of the aquatic ecosystem, which can affect not only the growth of submerged macrophytes but also the nutrient cycling in aquatic ecosystems. Currently, the effect of submerged macrophyte diversity on the epiphytic bacteria communities is far from well understood. This study compared the effects of submerged macrophyte on bacterioplankton and epiphytic bacterial communities, meanwhile explored the community structure and diversity of epiphytic bacterial communities on different macrophytes-Vallisneria natans,Myriophyllum spicatum, Potamogeton maackianus andHydrilla verticillata. The results showed that the α diversity and structure of planktonic bacterial communities were significantly different from those of the epiphytic bacterial communities. With the increase of submerged macrophyte diversity, the α diversity of epiphytic bacterial communities increased slightly. In the systems with high submerged macrophyte diversity, significantly higher α diversity and lower β diversity were found for the epiphytic bacterial community on H. verticillata. Bacteroidetes and Proteobacteria were dominant phyla on the submerged macrophyte leaves. Co-occurrence network analysis revealed that the modularity value of V. natans epiphytic bacterial network was relatively high. Methylophilus, Rhodobacter andFlavobacterium were core species in the co-occurrence networks. This study demonstrated the effect of submerged macrophytes on bacterial community structure in freshwater lakes, emphasizing the importance of host-specific selection for epiphytic bacterial communities, and deepening our understanding of the mechanism of bacterial colonization on submerged macrophytes.

Aquatic Viruses and Climate Change.

The viral component in aquatic systems clearly needs to be incorporated into future ocean and inland water climate models. Viruses have the potential to influence carbon and nutrient cycling in aquatic ecosystems significantly. Changing climate likely has both direct and indirect influence on virus-mediated processes, among them an impact on food webs, biogeochemical cycles and on the overall metabolic performance of whole ecosystems. Here we synthesise current knowledge on potential climate-related consequences for viral assemblages, virus-host interactions and virus functions, and in turn, viral processes contributing to climate change. There is a need to increase the accuracy of predictions of climate change impacts on virus- driven processes, particularly of those linked to biological production and biogeochemical cycles. Comprehension of the relationships between microbial/viral processes and global phenomena is essential to predict the influence on as well as the response of the biosphere to global change.

Interactive Effects of Rising Temperature and Nutrient Enrichment on Aquatic Plant Growth, Stoichiometry, and Palatability.

The abundance and stoichiometry of aquatic plants are crucial for nutrient cycling and energy transfer in aquatic ecosystems. However, the interactive effects of multiple global environmental changes, including temperature rise and eutrophication, on aquatic plant stoichiometry and palatability remain largely unknown. Here, we hypothesized that (1) plant growth rates increase faster with rising temperature in nutrient-rich than nutrient-poor sediments; (2) plant carbon (C): nutrient ratios [nitrogen (N) and phosphorus (P)] respond differently to rising temperatures at contrasting nutrient conditions of the sediment; (3) external nutrient loading to the water column limits the growth of plants and decreases plant C:nutrient ratios; and that (4) changes in plant stoichiometry affect plant palatability. We used the common rooted submerged plant Vallisneria spiralis as a model species to test the effects of temperature and nutrient availability in both the sediment and the water column on plant growth and stoichiometry in a full-factorial experiment. The results confirmed that plants grew faster in nutrient-rich than nutrient-poor sediments with rising temperature, whereas external nutrient loading decreased the growth of plants due to competition by algae. The plant C: N and C: P ratios responded differently at different nutrient conditions to rising temperature. Rising temperature increased the metabolic rates of organisms, increased the nutrient availability in the sediment and enhanced plant growth. Plant growth was limited by a shortage of N in the nutrient-poor sediment and in the treatment with external nutrient loading to the water column, as a consequence, the limited plant growth caused an accumulation of P in the plants. Therefore, the effects of temperature on aquatic plant C:nutrient ratios did not only depend on the availability of the specific nutrients in the environment, but also on plant growth, which could result in either increased, unaltered or decreased plant C:nutrient ratios in response to temperature rise. Plant feeding trial assays with the generalist consumer Lymnaea stagnalis (Gastropoda) did not show effects of temperature or nutrient treatments on plant consumption rates. Overall, our results implicate that warming and eutrophication might interactively affect plant abundance and plant stoichiometry, and therefore influence nutrient cycling in aquatic ecosystems.

Acute effects of nanoplastics and microplastics on periphytic biofilms depending on particle size, concentration and surface modification

Microplastics (MPs) can disintegrate into smaller sized microplastics and even nanoplastics (NPs). The toxicity of nanoplastics and microplastics on freshwater organisms have been well explored recently, however, very little is known about the potential impacts of NPs on freshwater biofilms, which are essential for primary production and nutrient cycling in aquatic ecosystems. In this study, we studied the acute effects (3 h of exposure) of polystyrene beads (PS, with diameter range from 100 nm to 9 μm) on five biological endpoints targeting community and ecosystem-level processes in biofilms: chlorophyll a, photosynthetic yield, and three extracellular enzyme activities. The results showed that the large size PS beads (500 nm, 1 μm, and 9 μm) exhibited negligible effects on the determined biological endpoints in biofilms within the range of concentrations (5–100 mg/L) in this study. However, high concentration of PS beads (100 nm, 100 mg/L) significantly decreased the content of chlorophyll a, and the functional enzyme activities of β-glucosidase and leucine aminopeptidase, suggesting negative effects on the carbon and nitrogen cycling of freshwater biofilms. Moreover, the influences of PS NPs (100 nm) on biofilms strongly depended on the surface modification of PS particles, with the positively charged PS NPs (amide-modified) exhibiting the highest toxicity to biofilms. The excess generation of reactive oxygen species (ROS) in this study indicated oxidative stress induced by PS NPs, which might lead to the observed nano-toxic effects on biofilms. In response, the antioxidant activity of biofilm was enhanced as indicated by the increased total antioxidant capacity (T-AOC). Overall, our findings highlight nanoplastics have potential to disrupt the basic ecological functions of biofilms in aquatic environments.

Functional sustainability of nutrient accumulation by periphytic biofilm under temperature fluctuations

ABSTRACT Temperature can fluctuate widely between different seasons, and this may greatly impact many biological processes. However, little is known about its influence on the functioning of benthic microbial communities. Here we investigated the nutrient accumulation capability of periphytic biofilm under temperature fluctuations (17–35°C). Periphytic biofilm maintained the same nutrient accumulation capacity after experiencing the ‘warming-hot-cooling’ temperature fluctuation under both lab and outdoor conditions as those without temperature disturbance. In response to temperature increase, both community composition and species richness changed greatly and the increase in biodiversity was identified as being the underlying mechanism boosting the sustainable function in nutrient accumulation, indicating zero net effects of community changes. These findings provide insights into the underlying mechanisms of how benthic microbial communities adapt to temperature fluctuations to maintain nutrient accumulation capacity and elucidate that periphytic biofilm plays important roles in influencing nutrient cycling in aquatic ecosystems under temperature changes such as seasonal fluctuations.

Functional diversity promotes phytoplankton resource use efficiency

AbstractUnderstanding the relationship between biodiversity and ecosystem functioning (BEF) is a central topic in ecology. Multi‐trait–based functional diversity has been proposed to improve mechanistic understanding of the BEF relationship; however, how trait‐based functional diversity affects ecosystem functioning and processes has rarely been addressed in aquatic ecosystems.Here, we examined the causal relationships between three phytoplankton functional diversity indices (FAD2, functional diversity based on dendrograms [FDc], FRic) and Shannon diversity index versus resource use efficiency for nitrogen (RUEN), phosphorus (RUEP) and silicate (RUESi), with monthly long‐term datasets from the marine (Western English Channel, 2000–2014) and freshwater (Lake Kasumigaura, 1984–2012) ecosystems.We employed Convergent Cross Mapping (CCM), a novel method developed for identifying causality for nonlinear dynamical systems; this is in contrast to linear approaches that cannot distinguish causality from correlation. CCM found that FDc is the most robust functional diversity index among the selected functional diversity indices (FAD2, FDc, FRic) in predicting phytoplankton resource use efficiency and exhibited a much stronger causal effect than the Shannon index.Furthermore, scenario exploration analysis indicates that most causal effects from phytoplankton diversity indices on resource use efficiency (RUEN, RUEPand RUESi) are on average positive, and FDc exhibited the most consistent positive causal effects on phytoplankton resource efficiency in both marine and freshwater ecosystems. Thus, increasing FDc can enhance phytoplankton resource use efficiency in aquatic ecosystems.Synthesis.Our results show significant causal effects of functional diversity on phytoplankton resource use efficiency in both marine and freshwater ecosystems. Among all selected functional diversity indices, functional diversity based on dendrogram is the most robust functional diversity index in promoting phytoplankton resource efficiency. Our study provides empirical evidences in natural aquatic systems that trait‐based functional diversity represents better species niche partitioning than the Shannon index and thereafter enhances resource use efficiency. This finding can improve our understanding on trophic transfer and nutrient cycling in aquatic ecosystems.

Short-Term Effects of Drying-Rewetting and Long-Term Effects of Nutrient Loading on Periphyton N:P Stoichiometry

Nitrogen (N) and phosphorus (P) concentrations and N:P ratios critically influence periphyton productivity and nutrient cycling in aquatic ecosystems. In coastal wetlands, variations in hydrology and water source (fresh or marine) influence nutrient availability, but short-term effects of drying and rewetting and long-term effects of nutrient exposure on periphyton nutrient retention are uncertain. An outdoor microcosm experiment simulated short-term exposure to variation in drying-rewetting frequency on periphyton mat nutrient retention. A 13-year dataset from freshwater marshes of the Florida Everglades was examined for the effect of long-term proximity to different N and P sources on mat-forming periphyton nutrient standing stocks and stoichiometry. Field sites were selected from one drainage with shorter hydroperiod and higher connectivity to freshwater anthropogenic nutrient supplies (Taylor Slough/Panhandle, TS/Ph) and another drainage with longer hydroperiod and higher connectivity to marine nutrient supplies (Shark River Slough, SRS). Total P, but not total N, increased in periphyton mats exposed to both low and high drying-rewetting frequency with respect to the control mats in our experimental microcosm. In SRS, N:P ratios slightly decreased downstream due to marine nutrient supplies, while TS/Ph increased. Mats exposed to short-term drying-rewetting had higher nutrient retention, similar to nutrient standing stocks from long-term field data. Periphyton mat microbial communities may undergo community shifts upon drying-rewetting and chronic exposure to nutrient loads. Additional work on microbial species composition may further explain how periphyton communities interact with drying-rewetting dynamics to influence nutrient cycling and retention in wetlands.

Contributions of freshwater mussels (Unionidae) to nutrient cycling in an urban river: filtration, recycling, storage, and removal

Consumers contribute to nutrient cycling in aquatic ecosystems by nutrient retention in tissues, metabolic transformations and excretion, and promoting microbial processes that remove nutrients (i.e., nitrogen (N) loss via denitrification). Freshwater mussels (Unionidae) form dense assemblages in rivers, and affect nutrient transformations through feeding, biodeposition, and bioturbation. However, the effects of Unionid mussels on N and phosphorus (P) retention are not commonly measured. We quantified rates of filtration, retention, and biodeposition of carbon (C), N, and P for two Unionid species: Lasmigona complanata and Pyganodon grandis. We used continuous-flow cores with 15N tracers to measure denitrification in sediments alone and with a single individual of each species. We conducted measurements in an urban river near Chicago, IL, USA that is a target for Unionid restoration. Both Unionid species showed high rates of P-specific feeding and retention, but low N-specific rates. This was in agreement with high N:P ratio in the water column. Each species significantly increased denitrification relative to sediment alone. 15N tracers suggested direct denitrification of nitrate increased denitrification, although enhanced coupled nitrification–denitrification likely also contributed to denitrification. Finally, denitrification rates with and without mussels were used to estimate the value of N loss under different scenarios for mussel restoration at the river scale. Overall, restored Unionid populations may enhance P retention in soft tissues and shells and N loss via denitrification. Ecosystem managers may find greater support for restoration of Unionid populations with careful calculations of their ecosystem role in nutrient retention and removal.

Influence of phosphorus availability on the community structure and physiology of cultured biofilms

Biofilms have important effects on nutrient cycling in aquatic ecosystems. However, publications about the community structure and functions under laboratory conditions are rare. This study focused on the developmental and physiological properties of cultured biofilms under various phosphorus concentrations performed in a closely controlled continuous flow incubator. The results showed that the biomass (Chl a) and photosynthesis of algae were inhibited under P-limitation conditions, while the phosphatase activity and P assimilation rate were promoted. The algal community structure of biofilms was more likely related to the colonization stage than with the phosphorus availability. Cyanobacteria were more competitive than other algae in biofilms, particularly when cultured under low P levels. A dominance shift occurred from non-filamentous algae in the early stage to filamentous algae in the mid and late stages under P concentrations of 0.01, 0.1 and 0.6mg/L. However, the total N content, dry weight biomass and bacterial community structure of biofilms were unaffected by phosphorus availability. This may be attributed to the low respiration rate, high accumulation of extracellular polymeric substances and high alkaline phosphatase activity in biofilms when phosphorus availability was low. The bacterial community structure differed over time, while there was little difference between the four treatments, which indicated that it was mainly affected by the colonization stage of the biofilms rather than the phosphorus availability. Altogether, these results suggested that the development of biofilms was influenced by the phosphorus availability and/or the colonization stage and hence determined the role that biofilms play in the overlying water.

Migratory fish excretion as a nutrient subsidy to recipient stream ecosystems

Summary Consumer excretion can be an important component of nutrient cycling in aquatic ecosystems. Uncertainty concerning the functional role of many freshwater organisms remains, including those with migratory life‐history strategies that may introduce nutrients to recipient systems. We quantified the magnitude, variability and importance of excretion by migratory fish in the context of stream nutrient cycling. In 2011–12, we collected data from tributaries of a central Utah reservoir used by two potamodromous fishes (Bonneville cut‐throat trout – BCT, Oncorhynchus clarkii utah; kokanee salmon – KOK, Oncorhynchus nerka) with temporally separated spawning migrations. To quantify the contribution of the two migratory freshwater fishes to nutrient cycling, we extrapolated measurements of per capita nitrogen (N) and phosphorus (P) excretion rates to the population level within the local environmental context of two tributaries. We observed differences in excretion subsidies between species and tributaries. BCT excretion rates and ratios were significantly greater than those for KOK. Estimates of the ratio of population‐level migrant excretion to tributary nutrient export were highly variable through time and between tributaries. These estimates were influenced by spatiotemporal hydrologic variation and positively related to ratios of migrant biomass to discharge. During migrations, daily migrant excretion loading comprised a maximum of 6–859% and 1–388% of tributary NH4‐N and soluble reactive phosphorus (SRP) export, respectively. Measurements of nutrient uptake suggested that migrant excretion could meet a substantial portion of ecosystem nutrient demand. Migrant excretion fluxes comprised 46–188% of ecosystem NH4‐N demand and varied between streams and species. In contrast, the proportion of SRP demand supplied by migrant excretion (34–37%) was relatively invariant. These results demonstrate an important role for potamodromous fishes as nutrient sources in recipient ecosystems. Furthermore, our data support predictions about when and where effects of fish‐derived nutrients will be strongest, thereby advancing the understanding of context‐dependent migratory fish effects in riverine ecosystems. Although widespread and common, potamodromous fishes are overlooked but important organisms capable of substantially affecting stream nutrient cycling.

Biotic and abiotic controls on the ecosystem significance of consumer excretion in two contrasting tropical streams

Summary1. Excretion of nitrogen (N) and phosphorus (P) is a direct and potentially important role for aquatic consumers in nutrient cycling that has recently garnered increased attention. The ecosystem‐level significance of excreted nutrients depends on a suite of abiotic and biotic factors, however, and few studies have coupled measurements of excretion with consideration of its likely importance for whole‐system nutrient fluxes.2. We measured rates and ratios of N and P excretion by shrimps (Xiphocaris elongata and Atya spp.) in two tropical streams that differed strongly in shrimp biomass because a waterfall excluded predatory fish from one site. We also made measurements of shrimp and basal resource carbon (C), N and P content and estimated shrimp densities and ecosystem‐level N and P excretion and uptake. Finally, we used a 3‐year record of discharge and NH4‐N concentration in the high‐biomass stream to estimate temporal variation in the distance required for excretion to turn over the ambient NH4‐N pool.3. Per cent C, N, and P body content of Xiphocaris was significantly higher than that of Atya. Only per cent P body content showed significant negative relationships with body mass. C:N of Atya increased significantly with body mass and was higher than that of Xiphocaris. N : P of Xiphocaris was significantly higher than that of Atya.4. Excretion rates ranged from 0.16–3.80 μmol NH4‐N shrimp−1 h−1, 0.23–5.76 μmol total dissolved nitrogen (TDN) shrimp−1 h−1 and 0.002–0.186 μmol total dissolved phosphorus (TDP) shrimp−1 h−1. Body size was generally a strong predictor of excretion rates in both taxa, differing between Xiphocaris and Atya for TDP but not NH4‐N and TDN. Excretion rates showed statistically significant but weak relationships with body content stoichiometry.5. Large between‐stream differences in shrimp biomass drove differences in total excretion by the two shrimp communities (22.3 versus 0.20 μmol NH4‐N m−2 h−1, 37.5 versus 0.26 μmol TDN m−2 h−1 and 1.1 versus 0.015 μmol TDP m−2 h−1), equivalent to 21% and 0.5% of NH4‐N uptake and 5% and &lt;0.1% of P uptake measured in the high‐ and low‐biomass stream, respectively. Distances required for excretion to turn over the ambient NH4‐N pool varied more than a hundredfold over the 3‐year record in the high‐shrimp stream, driven by variability in discharge and NH4‐N concentration.6. Our results underscore the importance of both biotic and abiotic factors in controlling consumer excretion and its significance for nutrient cycling in aquatic ecosystems. Differences in community‐level excretion rates were related to spatial patterns in shrimp biomass dictated by geomorphology and the presence of predators. Abiotic factors also had important effects through temporal patterns in discharge and nutrient concentrations. Future excretion studies that focus on nutrient cycling should consider both biotic and abiotic factors in assessing the significance of consumer excretion in aquatic ecosystems.

Functional bioturbator diversity enhances benthic–pelagic processes and properties in experimental microcosms

Widespread declines in biodiversity at both global and local scales have motivated considerable research directed toward understanding how changes in biological diversity may affect the stability and function of the ecosystems on which we rely. However, the research effort devoted to addressing this question in benthic systems has been minimal. In laboratory microcosms, we manipulated the number and composition of 3 functionally distinct benthic invertebrate freshwater species that are bioturbators of sediment over 3 biomass levels. Our objective was to test the effects of bioturbator diversity on rates and reliability of total dissolved P (TDP) flux between benthic and pelagic habitats. Both composition and species richness affected TDP flux. TDP flux was highest in the most species-rich community because of functional complementarity rather than selection effects. Furthermore, species richness enhanced TDP flux reliability by increasing the predictability of the biomass–TDP flux relationship by 30%, on average, for each species added. We attributed these nonadditive effects of invertebrate diversity to a combination of functionally mediated biogeochemical interactions and density-mediated interaction strength. Thus, our results suggest that bioturbator diversity can be important to nutrient cycling in aquatic ecosystems by strengthening benthic–pelagic coupling.

Querying the Obvious: Lessons from a Degraded Stream

Abstract A detailed assessment of degradation issues is essential for the development of reasonable restoration strategies. The assessment may be a difficult task when fluxes of organic matter and energy are concerned, which are primarily mediated by microorganisms. In small streams, biofilms are hot spots of trophic interactions. Small weirs cause small‐scale changes of flow velocity, which affects the formation, structure, and function of biofilms. Weirs are superficially considered as disturbing cross barriers that should immediately be removed for the restoration of riparian systems. However, our empirical studies of weirs in the stream Ilm, Germany, and conceptual modeling approaches revealed a rather beneficial effect because weirs compensate the loss of natural retention structures in straightened rivers. Longer processing time of particulate organic matter in the weir reservoirs may have a positive effect on biofilm productivity and nutrient cycling in aquatic ecosystems. This is a striking example of thorough investigations that resulted in a complete and surprising reassessment of a degradation situation, and for a case in which uninformed gut feeling decisions about management plans would have had detrimental effects.