Numbers Of Cellulolytic Bacteria Research Articles

Analysis of the intestinal microbiome in young laying hens of the "Hi-Line" cross against the background of the use of the mineral shungite

Growing young chickens under conditions of intensive keeping technology can lead to a decrease in nonspecific resistance, the manifestation of immunodeficiencies and increased susceptibility of the bird to adverse environmental factors and various opportunistic microorganisms. The presence of mycotoxins in feed is one of the main feed stresses. At the same time, stresses associated with vaccinations are added in the future and, of course, heat stresses play a special role in the summer months. The purpose of the work is to study the influence of the domestic natural adaptogen from the mineral shungite on productivity indicators and on the composition of the intestinal microbiome in young chickens of egg breed. The object of research was young laying hens of the High Line cross. To conduct the experiment at a day old, 3 groups of young animals were formed (1 control and 2 experimental - with different concentrations of the mineral shungite). The raw material for the production of a mineral additive from shungite was shungite from the Zazhogino deposit (Republic of Karelia, Medvezhyegorsk region). Fraction 0.2-0.8 mm, humidity up to 10%. Carbon content (C) 25-35%. The composition of the compound feed formula was developed in order to increase the immune status of chickens, accelerate the development of the internal organs of chickens in the early period and, as a result, increase the safety, uniformity and business yield of pullets. The intestinal microbiome of young laying hens was determined using high throughput sequencing. It should be noted that among the bacteria inhabiting the gastrointestinal tract, the function of digestion is performed by several phyla, the main part of which are bacteria of the phyla Actinobacteria, Firmicutes, Bacteroidetes and Proteobacteria. Thus, based on the results of high-throughput sequencing, the corrective effect of the adaptogen from shungite at different concentrations on the composition of the bird's intestinal microflora was established. The positive effect of shungite at a concentration of 1.0 kg/t of feed on the increase in the number of normoflora of blind processes was confirmed. A significant effect of the additive from the mineral shungite on the number of cellulolytic bacteria was revealed.

The nutritional quality of a fresh orange pulp-wheat straw mixture ensiled with either sugar beet pulp, wheat bran, or urea compared to corn silage (Zea mays) in sheep.

This study compares corn silage (CS) with an orange pulp-wheat straw mixture (OW) ensiled with either sugar beet pulp (SBP), wheat bran (WB), or urea in terms of intake, chemical composition, phenolic compounds, silage fermentation characteristics, digestibility, in vivo rumen variables and biochemical blood variables in 48 Shall male sheep, and in vitro methane (CH4) production. In addition to CS, five other silages: OW (i.e., 87.5% fresh orange pulp + 12.5% wheat straw); OWU (OW + 1% urea); OWS (87.5% fresh orange pulp + 8.6% wheat straw + 3.9% SBP); OWSU (87.5% fresh orange pulp + 8.6% wheat straw + 1% urea + 3.9% SBP); and OWB (87.5% fresh orange pulp + 8.6% wheat straw + 3.9% SBP) were ensiled for 90 days. All diets, which contained a mineral-vitamin premix (10 g/kg of dry matter [DM]), were each randomly assigned to five sheep (live weight 40 ± 2.5 kg) using a completely randomized design, and the SAS software MIXED method was used for data analysis. Among all silages, OWU and OWSU had the highest (P < 0.01) ammonia-N concentration, but there were no differences in other fermentation characteristics. Animals fed on the CS diet had higher DM intake (P = 0.01) and DM (P = 0.01), organic matter (P = 0.01), and neutral detergent fiber (P = 0.02) digestibilities compared with other diets. However, sheep receiving OWU and OWSU diets had higher (P < 0.01) crude protein digestibility than those fed on other diets. The OWU and OWSU-fed sheep had the highest (P = 0.04) ruminal ammonia-N concentration. Sheep fed on CS had higher (P = 0.03) ruminal total short-chain fatty acids, acetate concentration (P = 0.02), total protozoa (P < 0.01), and cellulolytic bacteria numbers (P < 0.01), but had a lower (P = 0.03) propionate concentration compared with the other sheep. In vitro CH4 production was higher (P = 0.01) with the CS diet compared to the orange pulp diets. Estimated microbial protein supply was lower (P = 0.05) with CS compared to all orange silages. In conclusion, the variation in the nutritive quality among the OWS, OWSU, and OWB is relatively small, and the OWB, which is most comparable to CS, was judged to be nutritionally the best among the diets.

Glucogenic and lipogenic diets affect in vitro ruminal microbiota and metabolites differently.

This study was conducted to evaluate the effects of two glucogenic diets (C: ground corn and corn silage; S: steam-flaked corn and corn silage) and a lipogenic diet (L: sugar beet pulp and alfalfa silage) on the ruminal bacterial and archaeal structures, the metabolomic products, and gas production after 48 h in vitro fermentation with rumen fluid of dairy cows. Compared to the C and S diets, the L dietary treatment leaded to a lower dry matter digestibility (DMD), lower propionate production and ammonia-nitrogen concentration. The two glucogenic diets performed worse in controlling methane and lactic acid production compared to the L diet. The S diet produced the greatest cumulative gas volume at any time points during incubation compared to the C and L diet. The metabolomics analysis revealed that the lipid digestion especially the fatty acid metabolism was improved, but the amino acid digestion was weakened in the L treatment than in other treatments. Differences in rumen fermentation characteristics were associated with (or resulting from) changes in the relative abundance of bacterial and archaeal genera. The rumen fluid fermented with L diet had a significantly higher number of cellulolytic bacteria, including the genera of Ruminococcus, Butyrivibrio, Eubacterium, Lachnospira, unclassified Lachnospiraceae, and unclassified Ruminococcaceae. The relative abundances of amylolytic bacteria genera including Selenomonas_1, Ruminobacter, and Succinivibrionaceae_UCG-002 were higher in samples for diets C and S. The results indicated that the two glucogenic diets leaded to a higher relative abundance of bacteria which functions in succinate pathway resulting in a higher propionate production. The steam-flaked corn diet had a higher gas production and lower level of metabolites in fatty acids and amino acids. Most highly abundant bacteria were observed to be not sensitive to dietary alterations of starch and fiber, except for several amylolytic bacteria and cellulolytic bacteria. These finding offered new insights on the digesting preference of ruminal bacteria, which can assist to improve the rumen functioning.

Influence of Using Various Levels of Protein Concentrate in Rations of Ayrshire Dairy Cows on Rumen Microbiome, Reproductive Traits and Economic Efficiency.

Simple SummaryNumerous studies in animal nutrition science have demonstrated a close connection between the chemical composition and nutritional value of cow diets, the number of rumen bacterial communities and animal productive and reproductive performance. Thus, the microorganisms of cow rumen play a primary role in the processes of digestion; meanwhile, it is necessary to highlight that their functional significance is much wider. The aim of this study was to investigate the outcomes of the inclusion of different levels of protein concentrate in rations of Ayrshire dairy cows in relation to the rumen microbiome, reproductive traits and economic value. Our manuscript presents molecular biological studies to establish the quantitative and specific composition of the microorganisms of the rumen. T-RFLP analysis was performed to determine the percentage of the components of the bacterial community. The results showed that the supplementation of “Agro-Matic” caused no deviations from the normal standards of cellulolytic, amylolytic, transit and pathogenic bacteria, no impact on reproductive traits and significantly improved the profitability of the milk production process. These findings provide a scientific addition for a greater understanding of the rumen microbiome of dairy cows when supplemented by different levels of protein concentrate in their rations.Animal feeding research has revealed a close relationship between the chemical composition and nutritional value of cow rations, the number of rumen bacterial communities and animal productivity. Our present research aimed to investigate the outcome of inclusion of different levels of protein concentrate in rations of Ayrshire dairy cows in relation to the rumen microbiome, reproductive traits and economic value. Forty-five Ayrshire cows were divided into three groups (15 in each). The first control group 0 AM was fed the basal ration, while the second 1 AM and third 2 AM groups were fed the basic ration with the sunflower cake replaced by different levels of protein concentrate Agro-Matic (1 and 1.5 kg/head/day, respectively). Ruminal fluid samples, reproductive parameters and economic value were studied. During the early lactation period, 120 days in milk (DIM), the number of pathogenic microorganisms decreased in both the 1 AM and 2 AM groups when compared with the control group 0 AM; moreover, a significant decrease in Peptococcus bacteria was recorded in the 1 AM group, while Fusobacterium decreased in the 2 AM group. At the end of lactation, the total number of cellulolytic bacteria increased with the use of protein concentrate in animals of the 1 AM group when compared with the control group. Regarding undesirable bacteria, the 2 AM group recorded the highest value for Lactobacilli and Actinobacteria when compared with the 0 AM group (0.18 and 8.90 vs. 0.04 and 4.24), and the differences were significant (p < 0.05). The insemination index and the duration of the days open period decreased in the 2 AM group, while the differences were p > 0.05. The profitability of milk production increased by 2.76% and 6.28% in both supplemented groups, and the differences compared to the 0 AM group were significant. We conclude that the supplementation of Agro-Matic caused no deviations from the normal standards of cellulolytic, amylolytic, transit and pathogenic bacteria, no impact on reproductive functions and significantly improved the profitability of the milk production process of Ayrshire dairy cows.

The Potential of Heavy Metal Plumbum (Pb) Degradation Agents in Composted Raw Materials from Inked Paper Waste

The pre-composting process of inked waste paper serves to reduce Pb levels in compost raw materials in the form of inked waste paper by using Pb (lead) degradation agents in the form of corn cob charcoal, activated charcoal, PGPR and cow rumen liquor. This study intends to ensure the quality of waste compost materials in the form of inked waste paper after being given pb degradation agents. Pb test using AAS (Atomic Absorbtion Spectrophotometer) method and cellulolytic bacteria test using pour plate method. The data were statistically tested with Anova and LSD advanced tests. From the results of observations, it was known that the provision of Pb degradations agents in the form of activated charcoal and PGPR has a significant effect on Pb levels and has met SNI 19-7030-2004. Meanwhile, the highest number of cellulolytic bacteria was found in the treatment of giving cow rumen liquor followed by PGPR treatment

Isolasi Bakteri Selulolitik Asal Saluran Pencernaan Rayap Dan Daya Hidupnya Pada Berbagai Substrak Yang Berasal Dari Limbah Pertanian Dan Perkebunan

ABSTRACT This study aimed to identify isolates that produce cellulase enzymes derived from cellulolytic bacteria from the digestive tract of termites and to determine the best type of substrate as the carrier and survival of these isolates. This research consists of 3 (three) stages. The first stage of research was the isolation of cellulolytic bacteria using descriptive data analysis. The second stage of research was to determine the best carrier for selected cellulolytic isolates, while the third stage was to determine the shelf life of the isolates with the selected substrate as the best carrier by analyzing data using analysis of variance. The results of the first phase of research obtained 3 isolates of cellulolytic bacteria from the best termite digestive tract based on the clear zone index test with isolate code VR52, VR61 and VR81 with clear zone index for each isolate 1.087; 2,250 and 1,710 mm. Based on Gram staining, the three isolates were gram-positive bacteria in the form of bacilli. Maximum enzyme activity in isolate VR61 (Bacillus sp) with its enzyme activity (19.91 µ/mL). The results of the second stage study showed that rice bran was the best sAubstrate based on total microbes with a value of 202 x 109 CFU / g. The results of the third stage research showed that the number of cellulolytic bacteria in the selected sub-extract (rice bran) at a storage temperature of 4oC (178.92 x 109 CFU / gr) was more than that of storage at 27oC (101.69 x 109 CFU / gr). This research concludes that the longer the storage time shows a decrease in the number of bacteria and pH in the sub-extract. The best interaction on rice bran sub-extract as a carrier at a storage temperature of 4oC in the second week with the number of cellulolytic bacteria 197.8 x 109 CFU / gr with a pH value of 6.46 and the fourth week of 167.85 x 109 CFU / gr with a pH value of 6.39. Keywords: Cellulose, Cellulolytic Bacteria, Termites

Features of the formation of the bacterial community of the rumen and the biochemical status of the cows depending on the protein source

The results of scientific and economic experiment on the use of protein concentrate “AgroMatic” in feeding highly productive cows of Ayrshire breed during lactation have been provided in the article. The use of protein concentrate “Agro-Matic” in the rations of dairy cattle in the amount of 1,0 and 1,5 kg/head/day has been leaded to an increase in the content of cellulolytic microflora at the end of lactation compared with the control group. At the same time, the level of microorganisms that stimulate and promote immunity (bacilli, bifid bacterium) and suppress the development of pathogenic bacteria has been observed in high amounts throughout lactation in the experimental groups whose ration was put with protein concentrate. In the rumen content of cows have been receiving 1,5 kg/head/day of protein concentrate “Agro-Matic”, the increased content of bifid bacterium by 0,03 abs.% and bacilli by 0,91 abs.% has been noted. The inclusion of the maximum level of protein concentrate was characterized by the decrease in the number of pathogenic microorganisms like pathogens of mastitis and other diseases (lactobacilli, actinomycetes and enterobacteria). The total number of cellulolytic bacteria in the rumen content at the end of lactation when using 1,0 kg/head/day of protein concentrate in animals increased compared to animals that consumed the basic ration. The inclusion of protein concentrate throughout lactation contributed to the increase in the blood content of total protein and nitrogen of free amino acids. Thus, the use of protein concentrate during the feeding period increased the intensity of protein metabolism in animals. The inclusion of 1,5 kg of protein concentrate in the ration contributed to the increase in total protein in the blood by 4,6 g/l, at the level of 1,0 kg by 9,1 g/l (P &gt; 0,95). The index of insemination when using protein concentrate in lactating cows has been decreased by 21,7 % and the duration of the period of open days by 28,2 days.

Effects of milk replacer and whole milk feeding on rumen development, expression of genes related to volatile fatty acid absorption, and rumen bacteria in calves

Abstract: This research examined the effects of liquid feeds on calf performance, rumen development, rumen cellulolytic bacteria count, and total bacteria diversity. Twenty Holstein bull calves were allocated to 2 groups either fed with milk replacer (MR) or whole milk. Calves fed milk tended to have higher (P = 0.058) average daily weight gain as compared to calves fed with MR during the entire experimental period. Starter mixture intake was not influenced by either milk or milk replacer feeding. Calves fed with milk had higher (P < 0.001) proliferative cells in the rumen papilla. The expressions of MCT1, MCT4, NHE1, NHE3, ACSS1, AceCS2, and ACSM1 genes, which are related to volatile fatty acid absorption, in the dorsal sac of the rumen were similar for calves fed either MR or whole milk. Fibrobacter succinogenes (P = 0.017) and Ruminococcus flavefaciens (P = 0.037) were significantly higher in the rumen of the milkfed calves. Moreover, denaturing gradient gel electrophoresis (DGGE)-derived dendrograms showed noticeable differences in ruminal microbial population between MR-fed and milk-fed calves. In conclusion, feeding calves with whole milk, which contains better quality protein and nutrients, instead of milk replacers, positively affects rumen development, cellulolytic bacteria numbers and total bacteria diversity.

102 Detecting coprophagy in foals and its relationship with foal gut health

Abstract Consumption of maternal feces is commonly observed in foals; however, the role of this activity in foal health is unknown. Therefore, this study aimed to determine the occurrence of coprophagy in foals and how it relates to foal gut health. Milk samples and foal feces were collected from 12 mare-foal pairs at 12 h, 3, 5, 7, 10, 14, and 21 d after foaling. Milk yield was estimated after muzzling foals for 2 h intervals at 7 and 14 d postpartum. To detect coprophagy in foals, nine mares were fed chromic oxide (10 g/d) with their concentrate in nosebags twice daily. Mares had ad libitum access to forage. Fecal samples were collected immediately after defecation and used to enumerate cellulolytic bacteria, lactobacilli, and lactate-utilizing bacteria using culture-based techniques. Enumeration data were log10 transformed before statistical analyses. Frozen feces were used to analyze neutral detergent fiber (NDF) using a Fiber Analyzer (Ankom Technology, NY, USA), then ashed and digested to analyze chromic oxide via atomic absorption. Fecal scores were recorded daily to monitor for signs of diarrhea. Changes over time were evaluated using repeated measures ANOVA and relationships between variables were analyzed using Pearson’s correlation coefficient (SAS 9.4). Coprophagy was detected as early as 3 d after birth and detected in all foals by 7 d of age. Peak coprophagy occurred at 14 d after birth. Milk yield was negatively related to fiber and chromic oxide in foal feces (r = -0.64 and -0.70, respectively; P &amp;lt; 0.05). Chromic oxide in foal feces was positively related to the number of cellulolytic bacteria and NDF (r = 0.97 and 0.79, respectively; P &amp;lt; 0.05). Bouts of diarrhea tended to be negatively related to chromic oxide (r = -0.59; P = 0.0928). Maternal feces is likely an important source of fiber and microbial inoculum for foals, aiding in colonization of beneficial microbes.

Evaluation of various barley processing methods on rumen microbial population, histomorphometry, and fermentation characteristics in fattening lamb

Barley deserves a top place in the farm for feeding livestock. It is irreplaceable by any other grain in sheep diets for producing capacious rumen microbial yields. The present study was conducted to investigatethe effect of different methods of barley processing on a number of microbes, fermentation parameters, and the rumen tissue characteristics of fattening lambs. For this purpose, 20 fattening male lambs with a mean weight of 25 ± 1.1 kg were tested for 80 daysbasedon a completely randomized design with four treatments (GRB: ground barley, SRB: steam-rolled barley, GEB: germinated barley, SOB: soaked barley) and five replicates. Three lambs from each treatment were slaughtered and sampling was done on the rumen liquid and tissue to determine their pH and volatile fatty acid (VFA), amylolytic bacteria, proteolytic, cellulolytic, heterophilic, and protozoa contents. The findings showed that the number of cellulolytic bacteria in ground barley treatment was lower than that of soaked barley treatment. In addition, there existed fewer heterophilic bacteria in germinated barley groups compared with other treatments. The lactic acid level in the GRB was increased compared to that in SRB and GEB treatments (P &lt; 0.05). The GRB further reduced the thickness of the rumen wall in comparison with SRB. In general, replacing GRB with SOB improved certain thickness of the epithelial tissue and cellulolytic bacteria of the rumen.

Yield, chemical composition, fermentation characteristics, in vitro ruminal variables, and degradability of ensiled amaranth (Amaranthus hypochondriacus) cultivars compared with corn (Zea mays) silage.

Silages from four amaranth varieties (A5, A12, A14, and A28) were compared with corn silage (CS) in terms of their yield, chemical composition, phenolic compounds, oxalic acid and nitrate levels, silage fermentation characteristics, in vitro methane production, organic matter disappearance (OMD), microbial crude protein (MCP), ruminal ammonia (NH3-N), pH, volatile fatty acids, cellulolytic bacteria numbers, protozoa counts, and in situ dry matter (DM) and crude protein (CP) degradability were determined. Forages were harvested 93 d after planting, chopped, and ensiled in plastic buckets for 60 d. The study was based on a randomized complete block design, and data were analyzed using SAS, general linear model (GLM) procedure for normal distribution. Compared with CS, amaranth silages (AMS) had lower ash-free neutral detergent fiber nitrate, OMD (P < 0.001), phosphorus (P = 0.003), and metabolizable energy (ME) (P = 0.043) but higher (P < 0.001) CP, calcium, non-fiber carbohydrates (NFC), acid detergent lignin, ether extract, ash, total phenolics, pH, NH3-N concentration, MCP, digestible undegradable protein (DUP), and metabolizable protein (MP). Fresh, OM, OMD, ME (P < 0.001), and DM (P = 0.032) yields of AMS from different varieties were higher than CS, with the exception of A5. Overall, amaranth made good quality silage, with some variation, and A28 had the highest yield and nutritional value (CP, NFC, MCP, DUP, and MP). The yield, CP concentration, and nutritional value of A28 silage were higher than CS. Although these in vitro results are promising, they also need to be validated with future in vivo research.

Review: How Forage Feeding Early in Life Influences the Growth Rate, Ruminal Environment, and the Establishment of Feeding Behavior in Pre-Weaned Calves.

Simple SummaryUnder natural grazing systems, calves are likely to consume forage in early life. However, forage inclusion in the diet of pre-weaned calves has long been a controversial issue due to it possibly being associated with negative calf performance. Recent published literature seems to confound previous research. This review aims to understand the factors that may influence forage inclusion in the ration of pre-weaned calves. We have explored research related to the effect of feeding forage on rumen and behavioral development to better understand whether forage should be fed to the young calf. Based on the findings, it is concluded that a small amount of good quality forage is recommended for calves to improve their behavioral expression and rumen environment, which may further improve calf performance.The provision of forage to pre-weaned calves has been continuously researched and discussed by scientists, though results associated with calf growth and performance have remained inconsistent. Multiple factors, including forage type, intake level, physical form, and feeding method of both solid and liquid feed, can influence the outcomes of forage inclusion on calf performance. In the current review, we summarized published literature in order to get a comprehensive understanding of how early forage inclusion in diets affects calf growth performance, rumen fermentation, microbiota composition, and the development of feeding behavior. A small amount of good quality forage, such as alfalfa hay, supplemented in the diet, is likely to improve calf feed intake and growth rate. Provision of forage early in life may result in greater chewing (eating and ruminating) activity. Moreover, forage supplementation decreases non-nutritive oral and feed sorting behaviors, which can help to maintain rumen fluid pH and increase the number of cellulolytic bacteria in the rumen. This review argues that forage provision early in life has the potential to affect the rumen environment and the development of feeding behavior in dairy calves. Continued research is required to further understand the long-term effects of forage supplementation in pre-weaned calves, because animal-related factors, such as feed selection and sorting, early in life may persist until later in adult life.

Evaluation of the effectiveness of land reclamation based on microbiological and biochemical parameters assessed in an ozokerite mining and processing landfill sown with Trifolium hybridum and Dactylis glomerata

The aim of the study was to analyse the microbiological and biochemical activity of a reclaimed landfill produced during extraction and processing ozokerite and sown with Trifolium hybridum and Dactylis glomerata. The analyses were carried out in the third year after application of two doses of sewage sludge, spent mushroom substrate, sawdust, and manure to the landfill soil. The following parameters were determined: the total number of oligotrophic bacteria and filamentous fungi, the number of cellulolytic and lipolytic bacteria and fungi, respiratory activity, the activity of dehydrogenases, β-glucosidase, and lipase, and the activity of fluorescein diacetate hydrolysis. The results indicated that the wastes exerted a generally positive effect on the microbiological, biochemical, and enzymatic activities analysed in the reclaimed ground sown with both Trifolium hybridum and Dactylis glomerata. There was a negative effect on the total number of bacteria with low nutritional requirements, the number of cellulolytic bacteria, the number of lipolytic fungi, and the β-glucosidase and lipase activities only in some objects. The strength of the effects was dependent on the type and dose of the waste and on the plant species. The strongest impact on the analysed parameters was exerted by the manure, sewage sludge, and spent mushroom substrate, whereas the addition of sawdust was found to be the least beneficial. The higher dose of manure and the lower dose of spent mushroom substrate were the most beneficial doses of the wastes. The number of lipolytic bacteria and cellulolytic bacteria and fungi, as well as the fluorescein hydrolytic activity followed by the activity of dehydrogenases, β-glucosidase, and lipase were the most sensitive parameters.

Effects of yeast (Saccharomyces cerevisiae) supplementation on intake, digestibility, rumen fermentation and milk yield in Nili-Ravi buffaloes.

Rumen Yeast® (RY; Saccharomyces cerevisiae), a live yeast strain, improves milk yield and composition and nutrients digestibility through balancing rumen ecosystem and increasing ruminal cellulolytic bacteria numbers in cattle. To examine the effects of dietary supplementation of RY in Nili-Ravi buffaloes, 16 buffaloes with 8 L average daily milk production were randomly divided into two groups, and investigated for a 60-day period. Group I (control) was offered maize silage ad libitum as sole forage plus 3 kg of concentrate/head per day (16% crude protein (CP) and 72% total digestible nutrients (TDN)), while group II was given the same diet as control supplemented with RY (14 g/head per day). Feed intake, nutrient digestibility, rumen fermentation and milk production of each animal were recorded. Average dry matter (DM) intake was not affected (P>0.05) in buffaloes with or without RY (14.7 and 14.3 kg/day, respectively). Digestibility of DM, CP, and ruminal pH were similar (P>0.05) between the groups, but the digestibility coefficients of neutral detergent fiber and acid detergent fiber were greater (P<0.05) for the animals that received RY. Milk production (9.60 vs. 9.15 L/day) and 4% fat corrected milk (FCM) (11.32 vs. 11.85 L/day) were significantly (P<0.05) greater in the buffaloes fed with RY than the control group. Milk composition was similar between the experimental groups, however, milk somatic cell count (SCC) was significantly (P<0.01) lower in RY supplemented buffaloes than the control animals. In conclusion, feeding RY had positive effects on milk production, fibre digestibility and SCC in buffaloes fed maize silage-concentrate based diet.

Влияние соломы в севообороте на численность микроорганизмов и биологическую активность почвы

The intensity of straw decomposition in crop rotation with and without the use of mineral and organic fertilizers and the effect of straw on the number of microorganisms in sod-podzolic soil were studied. The results of the studies were summarized according to the data of two long lasting stationary field experiments conducted at different time. It was established that the process of straw decomposition in the soil is extended in time and develops in stages. In the year of its application the greatest development was obtained by bacteria which used organic nitrogen. On the first_aftereffect of straw, along with the increase in the number of bacteria using organic nitrogen, the process of its decomposition included actinomycetes, fungi and cellulose bacteria. In the third year the number of cellulolytic bacteria and fungi increased. Solid manure and green manure together inhibited the process of straw mineralization. Microorganisms were originally included in the processing of easily degradable green manure and manure and did not react to a hardly decomposable substratum, the straw, its mineralization was moved to the last stage. Liquid manure when mixed with straw was, in general, equal to nitrogen fertilizers. It provided the development of more fungi and cellulolytic bacteria. Bacteria that consume organic nitrogen under the first crop (peas) developed better when the straw was buried at a depth of 20-22 cm compared to surface deposition to a depth of 14-16 cm. The number of fungi and cellulolytic bacteria did not change at the same time. In the second year under the winter rye, the number of actinomycetes increased with incorporation of straw to a depth of 14-16 cm. In the third year, under barley, the straw embedded into 20-22 cm depth positively affected the development of actinomycetes and cellulolytic bacteria. Thus, the incorporation of straw into the traditional depth of the arable layer of 20-22 cm had no negative effect on the development of aerobic bacteria (actinomycetes and cellulolytic bacteria).

Biochanin A improves fibre fermentation by cellulolytic bacteria.

The objective was to determine the effect of the isoflavone biochanin A (BCA) on rumen cellulolytic bacteria and consequent fermentative activity. When bovine microbial rumen cell suspensions (n=3) were incubated (24h, 39°C) with ground hay, cellulolytic bacteria proliferated, short-chain fatty acids were produced and pH declined. BCA (30μgml-1 ) had no effect on the number of cellulolytic bacteria or pH, but increased acetate, propionate and total SCFA production. Addition of BCA improved total digestibility when cell suspensions (n=3) were incubated (48h, 39°C) with ground hay, Avicel, or filter paper. Fibrobacter succinogenes S85, Ruminococcus flavefaciens 8 and Ruminococcus albus 8 were directly inhibited by BCA. Synergistic antimicrobial activity was observed with BCA and heat killed cultures of cellulolytic bacteria, but the effects were species dependent. These results indicate that BCA improves fibre degradation by influencing cellulolytic bacteria competition and guild composition. BCA could serve as a feed additive to improve cellulosis when cattle are consuming high-fibre diets. Future research is needed to evaluate the effect of BCA on fibre degradation and utilization invivo.

Rumen Bacteria Communities and Performances of Fattening Lambs with a Lower or Greater Subacute Ruminal Acidosis Risk.

Several ruminal cellulolytic bacteria species are sensitive to pH and could therefore be used as biomarkers to determine the risk of sub-acute ruminal acidosis (SARA) in finishing lambs. This study compared a 2–4 h post feeding ruminal pH measurement to abundances of the ruminal pH-sensitive bacteria to evaluate the risk of SARA in a herd of 120 finishing lambs. The lambs were reared in individual units for 50 days. Ruminal fluid was collected by use of an orogastric tube on day 51 2-4 h after feeding. Although the lambs were fed an identical diet, they responded differently in the abundances of four ruminal pH sensitive cellulolytic bacteria (Ruminococcus albus, Ruminococcus flavefaciens and Fibrobacter succinogenes and Butyrivibrio fibrisolvens). Lambs with the most or the least cellulolytic bacteria were then classified as either lower SARA risk (LSR, n = 10) or higher SARA risk group (HSR, n = 10), respectively. Data showed that the ruminal pH and VFA profiles were uncorrelated with the number of cellulolytic bacteria (P > 0.050). Lambs with the HSR showed lower ruminal pH (P = 0.013) and acetate to propionate ratio (P = 0.018), higher concentrations of lactate (P = 0.035) and proportion of propionate (P = 0.033) compared to those with the LSR. The DMI and ADG did not differ in LSR and HSR lambs (P > 0.050). A diversity analysis revealed significantly lower diversity in HSR lambs than in LSR (Simpson index, P = 0.004). The relative abundances of the phyla Bacteroidetes, Fibrobacteres, Verruomicrobia, and Proteobacteria were higher in LSR lambs than in HSR (P < 0.050). The abundances of several phyla including Firmicutes, Tenericutes and Actinobacteria were higher in the HSR than in the LSR group (P < 0.050). The bacterial communities of the LSR and HSR clustered separately in rumen based on the Unifrac distances, indicating distinct bacteria communities at OTU level between the LSR and HSR lambs. Overall, there was no correlation between 2 and 4 h post-feeding ruminal pH and the abundance of pH-sensitive bacteria and the amount of these bacteria could be used as a potential biomarker of SARA in lamb herd.

Illumina Sequencing Approach to Characterize Thiamine Metabolism Related Bacteria and the Impacts of Thiamine Supplementation on Ruminal Microbiota in Dairy Cows Fed High-Grain Diets.

The requirements of thiamine in adult ruminants are mainly met by ruminal bacterial synthesis, and thiamine deficiencies will occur when dairy cows overfed with high grain diet. However, there is limited knowledge with regard to the ruminal thiamine synthesis bacteria, and whether thiamine deficiency is related to the altered bacterial community by high grain diet is still unclear. To explore thiamine synthesis bacteria and the response of ruminal microbiota to high grain feeding and thiamine supplementation, six rumen-cannulated Holstein cows were randomly assigned into a replicated 3 × 3 Latin square design trial. Three treatments were control diet (CON, 20% dietary starch, DM basis), high grain diet (HG, 33.2% dietary starch, DM basis) and high grain diet supplemented with 180 mg thiamine/kg DMI (HG+T). On day 21 of each period, rumen content samples were collected at 3 h postfeeding. Ruminal thiamine concentration was detected by high performance liquid chromatography. The microbiota composition was determined using Illumina MiSeq sequencing of 16S rRNA gene. Cows receiving thiamine supplementation had greater ruminal pH value, acetate and thiamine content in the rumen. Principal coordinate analysis and similarity analysis indicated that HG feeding and thiamine supplementation caused a strong shift in bacterial composition and structure in the rumen. At the genus level, compared with CON group, the relative abundances of 19 genera were significantly changed by HG feeding. Thiamine supplementation increased the abundance of cellulolytic bacteria including Bacteroides, Ruminococcus 1, Pyramidobacter, Succinivibrio, and Ruminobacter, and their increases enhanced the fiber degradation and ruminal acetate production in HG+T group. Christensenellaceae R7, Lachnospira, Succiniclasticum, and Ruminococcaceae NK4A214 exhibited a negative response to thiamine supplementation. Moreover, correlation analysis revealed that ruminal thiamine concentration was positively correlated with Bacteroides, Ruminococcus 1, Ruminobacter, Pyramidobacter, and Fibrobacter. Taken together, we concluded that Bacteroides, Ruminococcus 1, Ruminobacter, Pyramidobacter, and Fibrobacter in rumen content may be associated with thiamine synthesis or thiamine is required for their growth and metabolism. In addition, thiamine supplementation can potentially improve rumen function, as indicated by greater numbers of cellulolytic bacteria within the rumen. These findings facilitate understanding of bacterial thiamine synthesis within rumen and thiamine's function in dairy cows.

Effects of Dietary Forage and Calf Starter Diet on Ruminal pH and Bacteria in Holstein Calves during Weaning Transition.

We investigated the relationship between ruminal pH and bacteria in calves fed calf starter with and without forage during weaning transition. First, 16 Holstein bull calves were obtained from dairy farms and equipped with rumen cannulas by cannulation surgery. Then, calves (73.5 ± 4.2 kg; mean ± SE) were assigned to groups fed calf starter either with forage (HAY, n = 8) or without forage (CON, n = 8), and all calves were weaned at 8 weeks of age. Ruminal pH was measured continuously, and rumen fluid samples were collected at 7, 8, 9, and 11 weeks of age, namely −1, 0, 1, and 3 weeks after weaning, respectively, to assess volatile fatty acid concentrations and bacterial DNA. The 24-h mean ruminal pH was significantly (P < 0.05) different between the two groups. Diurnal changes in the 1-h mean ruminal pH were observed throughout the study in the HAY group; however, they were not observed at 0 and 1 weeks after weaning in the CON group. Moreover, the HAY group had significantly (P < 0.05) higher proportions of acetate and butyrate and lower proportion of propionate, and significantly (P < 0.05) lower ruminal acetate-to-propionate ratios were observed in the CON group. The ruminal bacterial diversity indices decreased after −1 week in both groups and increased at 0 and 1 weeks after weaning in the HAY and CON groups, respectively. From the 454 pyrosequencing analysis, significant differences (P < 0.05) were observed in the relative abundance of several phyla (Bacteroidetes, Actinobacteria, and Tenericutes) and one genus (Prevotella) between the two groups. From quantitative real-time PCR analysis, the HAY group had the higher copy numbers of cellulolytic bacteria (Ruminococcus flavefaciens and Ruminococcus albus) compared with the CON group. This study demonstrated that feeding of dietary forage alleviates subacute ruminal acidosis due to diurnal changes in ruminal pH. Furthermore, changes in ruminal pH affect the ruminal bacterial diversity and relative abundance, and these changes might have influenced the establishment of fermentative ruminal functions during weaning transition.

Oral administration of Lactobacillus plantarum and Bacillus subtilis on rumen fermentation and the bacterial community in calves.

The objective of this study was to assess the effect of dietary probiotics on rumen fermentation and the bacterial community in dairy calves. Twelve Holstein calves were randomly allocated to three treatments: a basal diet, the basal diet supplemented with Lactobacillus plantarum GF103 (LB) or basal diet supplemented with a mixture of Lactobacillus plantarum GF103 and Bacillus subtilis B27 (LBS). A milk replacer was fed to calves from 8 days of age. A starter and alfalfa hay was offered ad libitum from 21 and 28 days of age, respectively, and the orts were weighted daily. The ruminal fluid was sampled at 56 and 83 days of age to determine the rumen fermentation characteristics. The bacterial community was analyzed by denaturing gradient gel electrophoresis (DGGE) and the number of certain bacteria was quantified by real-time polymerase chain reaction. The ratio of total dry matter intake to average body wieght was higher in the control (P < 0.05). The DGGE fingerprint of the 16S ribosomal RNA gene was affected by the blended probiotics at 83 days of age. The number of Ruminococcus albus was lower in the LB and LBS treatment (P < 0.05). Oral administration of the probiotics affected the rumen bacterial community and the numbers of cellulolytic bacteria decreased.