Northern New Research Articles

Absence of Coxiella burnetii in kangaroo ticks (Amblyomma triguttatum) from a high seroprevalence population of eastern grey kangaroos

Q fever, caused by Coxiella burnetii, is an important zoonotic and public health concern worldwide. Kangaroos are thought to be a likely wildlife reservoir for C. burnetii in Australia and the kangaroo tick (Amblyomma triguttatum) has often been considered a vector. In this descriptive study of ticks collected from a population of eastern grey kangaroos (Macropus giganteus) with a high serological (84 %) and molecular (65 %) prevalence of C. burnetii in northern New South Wales, a total of 72 A. triguttatum ticks were tested by PCRs targeting the IS1111, htpAB, and com1 genes of the Coxiella genome. Despite the remarkably high prevalence of coxiellosis in the host population, none of the ticks were positive for Coxiella. This finding suggests that the kangaroo tick may not play a significant role in the transmission dynamics of C. burnetii in this particular host population.

Salinity and oven-drying effects on the plasticity of a marine soft clay

Considering the extensive use of plasticity-based correlations in geotechnical practice to estimate soil parameters, this paper evaluates the influence of pore fluid salinity and soil drying on the plasticity of Ballina clay, an estuarine soft clay from northern New South Wales (Australia). A comprehensive experimental study, which includes controlled leaching/salinisation paths applied to natural (remoulded) as well as oven-dried clay, prior to the estimation of the Atterberg limits, is presented. Plasticity tests are complemented with chemical analysis of the pore fluid carried out to evaluate the processes involved in the leaching/salinisation mechanisms for remoulded and oven-dried clay. A strong dependency of liquid limit on pore fluid salinity and oven-drying is observed in Ballina clay. Leaching modifies the soil fabric from an initially saline–sodic flocculated towards a normal flocculated arrangement. The experimental results show that changes in soil plasticity upon leaching are largely reversible upon salinisation paths. Oven-drying promotes the stacking of clay minerals (aggregation), which in turn reduces the water absorption capacity of the clay. The consequences of neglecting both salinity and drying effects in practice when adopting well-established relationships between mechanical parameters and soil plasticity are also briefly discussed.

The Watersheds Speak: The Voice of Ecosystems in Northern New York's Environmental Movements☆

AbstractThis paper explores how connectivity to place has brought life to contemporary environmental struggles in what is now known as New York State. Layers of memory, colonization, and stewardship are embedded within a community's relationship with their environment. By focusing on two case studies, the authors will illustrate how this relationship shaped successful place‐based resistance. Throughout our work, we offer the alternative methodology of ecocentric storytelling and artistic representation to elevate the voice of both ecosystems and all their inhabitants. Both case studies are centered on environmental/social movements that foreground the inherent personhood of the natural world. The first will focus on the Ashokan Reservoir, in the Catskill Mountains, on land guarded by the Lenape. It is a location that has suffered multiple waves of colonization and successfully resisted a large damming operation. The second case study will be centered on the Upper St. Lawrence River/Kaniatarowanénhne Watershed, Haudenosaunee Territory, where rural communities are uniting to grant Rights to the Rivers that bring life to their communities. Both cases exemplify the story of communities that defended their livelihoods and environments by uniting with their most reliable allies, the Water, and all their more‐than‐human guardians.

Conservation priorities for functionally unique and specialized terrestrial vertebrates threatened by biological invasions.

Invasive non-native species (INS) continue to pose a significant threat to biodiversity, including native population declines, which can ultimately disrupt ecosystem processes. Although there is growing evidence of the impacts of INS on functional diversity, most of the existing approaches to prioritization of species for conservation still focus on taxonomic diversity, neglecting the ecological role of species. We developed the functionally unique, specialized, and endangered by invasive non-native species (FUSE INS) score to fill this gap by combining functional irreplaceability (i.e., uniqueness and specialization) of species with their extinction risk due to INS. We calculated this score for 3642 terrestrial vertebrates exposed to INS by assessing how INS affected them based on the IUCN Red List and by evaluating their specialization and uniqueness in a multidimensional functional space. Thirty-eight percent of native species were both at high extinction risk because of INS and functionally unique and specialized, making them priority species for INS impact mitigation. Priority species of amphibians concentrated in Central America and Madagascar and of lizards in the Caribbean islands, northern Australia, New Zealand, and New Caledonia. Priority bird and mammal species were more widespread (birds, mostly in coastal areas, on Pacific islands, and in northern India and New Zealand; mammals, in southwestern Europe, Central Africa, East Africa, Southern Africa, Southeast Asia, and eastern Australia). Seventy-eight species were also highly irreplaceable but not yet threatened by INS, suggesting that preventive conservation measures may help protect these species. For the 50 birds of the highest priority, 64% required conservation actions to mitigate the INS threat. The FUSE INS score can be used to help prioritize indigenous species representing large amounts of functional diversity. Incorporating functional diversity into the conservation prioritization of species and associated areas is key to accurately reducing and mitigating the impacts of INS on native biodiversity.

A new insular species of Gehyra (Squamata: Gekkonidae) from Papua New Guinea closely related to Gehyra oceanica

The wide-ranging gecko Gehyra oceanica occupies numerous islands across much of the Pacific Ocean basin. Previous work has identified six divergent genetic lineages within lizards assigned to this species. During an expedition to islands off of northern New Guinea we collected lizards of this complex on Crown Island that differ from all other known Gehyra in being sexually dimorphic in colour pattern. We find this population to also be genetically divergent to the other lineages previously identified, as we do with another lineage of populations from nearby islands. Given the unique colour pattern of the Crown Island population, combined with its divergent range of precloacal-femoral pores in males and its phylogenetic uniqueness from other members of this complex, we describe this population as a new species, Gehyra corona sp. nov. currently known only from Crown Island, Papua New Guinea. The discovery of this new species and an additional divergent genetic lineage from within the G. oceanica complex highlights the need for further taxonomic revision of that species complex. It seems likely that the new species we identify will prove endemic to Crown Island, but additional islands from around the Bismarck Sea need survey to establish its full range. Given the undisturbed habitat on most of Crown Island and the low human population there, we suggest that this species’ IUCN Red List conservation status be Least Concern. http://zoobank.org/urn:lsid:zoobank.org:pub:299432A3-6AC1-408D-9CCD-ECCB054A78FF

Genetic diversity of soybean dwarf virus in two regions of mainland Australia

Soybean dwarf virus (SbDV; family Tombusviridae, genus Luteovirus, species Luteovirus glycinis) is an RNA plant virus that is transmitted solely by aphids in a persistent, circulative and non-propagative manner. SbDV causes significant losses in cultivated Fabaceae, especially in subterranean clover (Trifolium subterraneum) pastures of mainland Australia. SbDV isolates are classified into four phenotypically distinguishable strains: YP, YS, DP, and DS. Y and D strains differ primarily in their host range, and P and S strains in their primary vector species. Genetically, Y and D strains separate into two clades in every genomic region except for the N-terminal region of the readthrough domain (N-RTD), in which P and S strains separate. SbDV diversity in Australia has yet to be investigated, so in this study, 41 isolates were collected from six different host species across two production regions of Australia: the south coast of Western Australia (‘south-west’) and northern New South Wales/southern Queensland (‘north-east’). A near-complete genome sequence of each isolate was obtained, and together with all 50 whole-genome sequences available in the GenBank database, underwent phylogenetic analysis of the whole genome nt and the N-RTD aa sequences. At the whole-genome level, the isolates separated into D and Y clades. At the N-RTD level, most of the isolates separated into P and S clades. All south-west isolates and 11 of the 31 north-east isolates were in the Y clade, and the remaining 20 north-east isolates were in the D clade. Except for one isolate that fell outside the P and S clades, all south-west and north-east isolates were in the P clade, suggesting that they are transmitted by Acyrthosiphon pisum and Myzus persicae. Available biological data largely supported the phenotypic inferences made from the phylogenetic analysis, suggesting that genetic data can provide critical epidemiological insights, provided that sufficient biological data have been collected.

Building power from below: Dispatches and lessons from movement building in a postindustrial city in Northern New Jersey in the United States

Building power from below: Dispatches and lessons from movement building in a postindustrial city in Northern New Jersey in the United States

Genome-Wide and Transcriptome-Wide Association Studies on Northern New England and Ohio Amyotrophic Lateral Sclerosis Cohorts.

Amyotrophic lateral sclerosis (ALS) is an age-associated, fatal neurodegenerative disorder causing progressive paralysis and respiratory failure. The genetic architecture of ALS is still largely unknown. We performed a genome-wide association study (GWAS) and transcriptome-wide association study (TWAS) to understand genetic risk factors for ALS using a population-based case-control study of 435 ALS cases and 279 controls from Northern New England and Ohio. Single nucleotide polymorphism (SNP) genotyping was conducted using the Illumina NeuroChip array. Odds ratios were estimated using covariate-adjusted logistic regression. We also performed a genome-wide SNP-smoking interaction screening. TWAS analyses used PrediXcan to estimate associations between predicted gene expression levels across 15 tissues (13 brain tissues, skeletal muscle, and whole blood) and ALS risk. GWAS analyses identified the p.A382T missense variant (rs367543041, p = 3.95E-6) in the TARDBP gene, which has previously been reported in association with increased ALS risk and was found to share a close affinity with the Sardinian haplotype. Both GWAS and TWAS analyses suggested that ZNF235 is associated with decreased ALS risk. Our results support the need for future evaluation to clarify the role of these potential genetic risk factors for ALS and to understand genetic susceptibility to environmental risk factors.

Rural unpaid caregivers' experiences in northern Aotearoa, New Zealand during the Covid-19 pandemic: A qualitative study.

Rural unpaid caregivers experience different opportunities and challenges than their urban counterparts. Our aim was to understand rural unpaid caregivers' experiences of challenges and opportunities during the Covid-19 pandemic in New Zealand. Rural northern New Zealand during the Covid-19 pandemic. A convenience sample of 10 unpaid rural caregivers, most supporting an older person living with dementia. A qualitative descriptive design. Data included interviews and online workshops, and a thematic analysis. Rural unpaid caregivers observed that some aspects of living in a rural context were helpful during the Covid-19 pandemic. However, tasks such as shopping and long-distance travel and communication (both telephonic and digital) became more complex. Abrupt changes to routine and closure of resources and support groups created challenges. Unpaid caregivers worried about what would happen if they were hospitalised themselves. There was a diversity of experience both across caregivers, of familiar routines and rural context as resources, increased challenges requiring resourcefulness to adapt, and experiences of crisis. Many experienced all three states at different times. This research provides valuable insights into challenges and opportunities experienced by rural unpaid caregivers during the Covid-19 pandemic and may help policy-makers and healthcare professionals develop improved emergency preparedness. Multilevel, multisector responses are needed to ensure effective health and social support and access to resources including health care, access to groceries and medication, transport, and communications (telephone and digital). Enhancing rural access to effective and inexpensive online services is particularly important, as is recognition of the value of rural sites or hubs of connection and social interaction.

Paspalum lepton - a valuable adjunct to the suite of grasses used in grazing systems in the subtropics or a potential weed

Native and exotic C4 grasses currently used in grazing systems in the subtropics have specific limitations with management, decline in feed quality as they mature and variable adaptation to soils and climates, providing opportunities to identify alternative species to complement or replace them. One option is Paspalum lepton (syn. P. nicorae), a sward- forming, rhizomatous grass native to subtropical South America with recognized forage value. An early maturing form of this species has become naturalized in Northern New South Wales since its introduction in the 1940s. More recent introductions with forage and amenity potential are being established vegetatively and by seed as it becomes available. This paper reviews published work on P. lepton and reports largely unpublished results and observations on its performance in research and development studies in subtropical Eastern Australia. The potential value of and threats posed by P. lepton in relation to its adaptation, productivity, competitiveness and role in limiting ingress of existing weedy species are discussed. APG 54281 and APG 54325 are palatable, productive and persistent lines of this grass that have proven to be adapted to livestock production systems in most of the humid lowland subtropics, and to a specific niche in the subtropical uplands of Southeast Queensland where there is a lack of adapted C4 grasses and C3 grasses are only marginally adapted.

Using two- and three-dimensional landmark data to examine the shape variation of Elliptio complanata from two heavily impounded rivers in northern New York (USA)

ABSTRACT Despite vast improvements in the quantification of shape variation with geometric morphometric methods, evaluating morphological variation in unionids has remained difficult due to the lack of measurable landmarks on shells and their overall morphological plasticity. In this study, we supplement traditional two-dimensional landmark data with three-dimensional landmark data. Using photogrammetry, we generate three-dimensional models that are landmarked. This approach adds a new, third dimension to capture shape changes, providing a more detailed understanding of the shell topography. With this method, we explore the differences in shell shape along river stretches of two heavily impounded rivers in northern New York (USA). We ask whether isolation by distance, presence of dams and/or difference in land use around sampling localities impact the shell morphologies of Elliptio complanata populations. Our data suggest that, although separated for almost a century, these unionid populations do not show a pattern of increased morphological difference with distance. But we find that broad, rounded morphs that are posteriorly extended occur more frequently in reservoir environments while unaltered river habitats have a higher number of slim and more elongated variants.

Utility of UAS Photogrammetry and Thermal Sensors for Identifying Locations and Understanding Functions of Puebloan Gravel Mulch Fields in Northern New Mexico

Utility of UAS Photogrammetry and Thermal Sensors for Identifying Locations and Understanding Functions of Puebloan Gravel Mulch Fields in Northern New Mexico

Precariously Balanced Rocks in Northern New York and Vermont, U.S.A.: Ground-Motion Constraints and Implications for Fault Sources

ABSTRACT Precariously balanced rocks (PBRs) and other fragile geologic features have the potential to constrain the maximum intensity of earthquake ground shaking over millennia. Such constraints may be particularly useful in the eastern United States (U.S.), where few earthquake-source faults are reliably identified, and moderate earthquakes can be felt at great distances due to low seismic attenuation. We describe five PBRs in northern New York and Vermont—a region of elevated seismic hazard associated with historical seismicity. These boulders appear to be among the most fragile PBRs in the region, based on reports from hobbyists. The PBRs are glacial erratics, best evidenced by glacial striations on bedrock pedestals. The pedestals themselves are locally high knobs, often situated on regionally high topography; this setting limits soil development and indicates that any outwash deposits were likely ephemeral. As a result, PBR ages can be reliably established by the retreat of the last continental ice sheet, ∼15–13 ka. To quantify the fragility of the PBRs, we surveyed them with ground-based light detection and ranging and calculated geometric parameters from the point clouds, field observations, and seismic responses. Preliminary validation of the 2023 time-independent U.S. National Seismic Hazard Model (NSHM) shows that the existence of PBRs is generally consistent with the median site-specific hazard curves. Only the Blue Ridge Road site suggests a modest reduction in hazard. To visualize the ensemble of data, we mapped the minimum permissible distance to potential source faults around each PBR site as a function of source magnitude by using the ground-motion models from the 2023 NSHM. Viewed in this manner, our data are consistent with potential M∼6.5 earthquake-source faults in many parts of the Lake Champlain Valley and northern Adirondack Mountains. Our work illustrates a potential pathway for better constraining earthquake-source faults in regions of cryptic faults.

Exploring the use of portable infrared spectroscopy as a quality assurance tool for the Australian Native/Traditional food industry: a case study on finger lime (Citrus australasica)

SummaryFinger limes (Citrus australasica) are an Australian native and traditional food that are known for their caviar‐like pearls often referred to as “Citrus Caviar”. This study aimed to spectrally characterise finger lime varieties sourced across South‐East Queensland and Northern New South Wales. The varieties investigated demonstrated a wide diversity in their phenotypic appearance; however, their infrared spectra were similar. The NIR spectra of the samples were collected using a portable instrument and the data analysed using principal component analysis (PCA) and partial least squares (PLS) regression. Differences in the PCA score plot were observed associated with the different varieties analysed. The cross‐validation statistics obtained for the prediction of adulteration of finger with Tahitian lime were R2CV and SECV 0.96% and 7%, respectively (using 8 PLS factors), using PLS regression. This study demonstrated that a portable handheld NIR instrument is able to identify finger lime varieties using both whole fruits and the corresponding peel samples. This study also showed that NIR was able to identify the level of adulteration of finger lime with Tahitian lime.

Clinician perspectives on the perioperative roles and responsibilities of anesthesia, surgery, and primary care

BackgroundAlthough high-risk older patients benefit from a multidisciplinary approach to perioperative care, the specific roles and responsibilities of the clinicians involved have yet to be adequately characterized. MethodsQualitative analysis of semi-structured interviews with four anesthesia preoperative clinic providers, seven surgeons, and nine primary care providers in northern New England. ResultsThe analysis revealed both distinct and overlapping roles and responsibilities. Anesthesia providers were described as a “safety net” and surgeons as “captain of the ship”, in charge of getting “all the ducks in a row” to avoid surgery delays and cancellations. Primary care providers saw themselves as the “quarterback”, ensuring care continuity and consideration of patient psychosocial factors. ConclusionsWhile all have a shared responsibility for facilitating patient-centered decision-making and a safe perioperative course, each discipline has different areas of focus and expertise. Role clarification can help optimize the distribution of responsibilities and enhance perioperative communication and collaboration.

Introducing Saffron and a few medicinal and high value plants for small farms and water deficit conditions of northern New Mexico

This document reviews the potential of cultivating saffron and other high-value medicinal and aromatic plants such as lavender, rosemary, thyme, chamomile, and Damask rose on small farms in northern New Mexico, particularly under water deficit conditions. Medicinal and aromatic plants, rich in secondary metabolites, are crucial to various industries including pharmaceuticals, cosmetics, and food. With an increasing global market for herbal products and a rising interest in traditional medicine, these plants offer economic benefits and sustainability for small-scale farmers. Northern New Mexico's diverse climate and soil conditions are suitable for growing a wide range of these plants, which are more lucrative and adaptable to dryland farming compared to traditional crops. Saffron (Crocus sativus), the most expensive herb globally, thrives in arid and semi-arid conditions and requires minimal resources. Its cultivation can enhance farm profitability through the integration of summer vegetable production. Lavender (Lavandula spp.), another high-value crop, is well-suited for the region and offers multiple uses in essential oils and personal care products. Rosemary (Rosmarinus officinalis) and thyme (Thymus vulgaris) are also highlighted for their drought tolerance and medicinal properties. Chamomile (Matricaria chamomilla) and Damask rose (Rosa damascena) are noted for their medicinal uses and potential in commercial production. The document underscores the importance of proper soil and water management, organic farming practices, and the role of secondary metabolites in enhancing crop quality under stressful conditions. Intercropping and the use of farm residues for soil conservation are also discussed. The review concludes that these high-value crops can diversify farm income, improve land use efficiency, and offer sustainable agricultural solutions for water-scarce regions in northern New Mexico.

Spatial Clustering of Rabies by Animal Species in New Jersey, United States, from 1989 to 2023.

Identifying spatial clusters of rabies in animals aids policymakers in allocating resources for rabies prevention and control. This study aimed to investigate spatial patterns and hotspots of rabies in different animal species at the county level in New Jersey. Data on animal rabies cases from January 1989 to December 2023 were obtained from the New Jersey Department of Health and aggregated by county. Global Moran's index (I) statistics were computed for each species to detect global spatial clustering (GeoDa version 1.22). Local Moran's indicators of spatial association (LISA) were computed to identify local clusters of rabies. The results from the LISA analysis were mapped using ArcGIS Pro to pinpoint cluster locations. A total of 9637 rabies cases were analyzed among raccoons (n = 6308), skunks (n = 1225), bats (n = 1072), cats (n = 597), foxes (n = 225), and groundhogs (n = 210). A global Moran's test indicated significant global spatial clustering in raccoons (I = 0.32, p = 0.012), foxes (I = 0.29, p = 0.011), and groundhogs (I = 0.37, p = 0.005). The LISA results revealed significant spatial clustering of rabies in raccoons and foxes in southeastern New Jersey and in groundhogs in northern New Jersey. These findings could guide the development of targeted oral rabies vaccination programs in high-risk New Jersey counties, reducing rabies exposure among domestic animals and humans.

Venous thromboembolism prevention program implementation in a community oncology practice: a cohort study

While national guidelines recommend Venous Thromboembolism (VTE) risk assessment in cancer outpatients and consideration of pharmacologic prophylaxis in high-risk patients, prophylaxis rates are low in community oncology practices. A successful model for guideline implementation (the Vermont Model, VM) is validated in an academic tertiary oncology setting. We undertook an implementation study to determine the success of this model in a multi-site community oncology practice. The study objectives were to: 1) adapt the VM to the community practice setting; 2) implement the adapted VM into practice; and 3) evaluate clinical and implementation outcomes. The study was carried out in three phases: (1) Pre-implementation, a multidisciplinary team addressed the need to adapt the VM to the local context including electronic medical record (EMR) optimisation and clinician education; (2) implementation of the strategies adapted to the local context, informed by VM and adapted based on stakeholder feedback; (3) prospective evaluation of clinical and implementation outcomes at six months after implementation. Following creation of a comprehensive initiation roadmap for the adaptation of VM program to the community practice, 302 cancer outpatients initiating new treatment met inclusion criteria over a 6 month implementation period. VTE risk education was provided to 100% of patients, and 98% (296) of patients received a VTE risk assessment. Of 52 patients (18%) who scored as high risk based on a modified Khorana (Protecht) score, 14 (27%) initiated prophylaxis. Barriers to program adaptation included EMR optimization challenges and practice-level responsibility assignment, time constraints, concern about potential drug interactions, and financial & insurance issues. Implementation of a multidisciplinary VTE prevention model in the community-based oncology setting successfully increased VTE education and risk assessment rates. AC prophylaxis rates were modestly increased, highlighting the need to understand and address barriers to anticoagulant prophylaxis prescribing in this setting. Northern New England Clinical Oncology Society Research Funding Program.

A Penalized Empirical Likelihood Approach for Estimating Population Sizes under the Negative Binomial Regression Model

In capture–recapture experiments, the presence of overdispersion and heterogeneity necessitates the use of the negative binomial regression model for inferring population sizes. However, within this model, existing methods based on likelihood and ratio regression for estimating the dispersion parameter often face boundary and nonidentifiability issues. These problems can result in nonsensically large point estimates and unbounded upper limits of confidence intervals for the population size. We present a penalized empirical likelihood technique for solving these two problems by imposing a half-normal prior on the population size. Based on the proposed approach, a maximum penalized empirical likelihood estimator with asymptotic normality and a penalized empirical likelihood ratio statistic with asymptotic chi-square distribution are derived. To improve numerical performance, we present an effective expectation-maximization (EM) algorithm. In the M-step, optimization for the model parameters could be achieved by fitting a standard negative binomial regression model via the R basic function glm.nb(). This approach ensures the convergence and reliability of the numerical algorithm. Using simulations, we analyze several synthetic datasets to illustrate three advantages of our methods in finite-sample cases: complete mitigation of the boundary problem, more efficient maximum penalized empirical likelihood estimates, and more precise penalized empirical likelihood ratio interval estimates compared to the estimates obtained without penalty. These advantages are further demonstrated in a case study estimating the abundance of black bears (Ursus americanus) at the U.S. Army’s Fort Drum Military Installation in northern New York.

Individual differences in developmental trajectories of affective attention and relations with competence and social reticence with peers.

This study examined individual differences in affective attention trajectories in infancy and relations with competence and social reticence at 24 months. Data collection spanned 2017 to 2021. Infants (N = 297, 53% White, 49% reported as assigned male at birth) recruited in South Central and Central Pennsylvania and Northern New Jersey provided eye-tracking data at five assessments. Caregivers self-reported anxiety symptoms, infant temperamental negative affect, and infant competence at the final assessment. A subgroup of infants participated in a peer social dyad at the final assessment. Using group-based trajectory modeling, we found three groups of infants with different affective attention trajectories: affective attention increasers (n = 73), affective attention shifters (n = 156), and affective attention decreasers (n = 50). Affective attention increasers exhibited low intercepts with steep attention increases, particularly to angry facial configurations. Affective attention shifters exhibited middle intercepts with attention decreases to facial configurations but an attention increase to angry facial configurations. Affective attention decreasers exhibited high intercepts with steep attention decreases. Infants in the affective attention increasers group exhibited more competence when accounting for caregiver anxiety symptoms and infant temperamental negative affect. Group membership was not related to social reticence during the peer social dyad. Infants higher in temperamental negative affect exhibited more social reticence, particularly as the social dyad continued. Our results provide evidence for individual differences in developmental trajectories of affective attention and relations with toddler social behavior. Our results are primarily generalizable to rural and urban populations in the Midatlantic United States. (PsycInfo Database Record (c) 2024 APA, all rights reserved).