Dynamic influences of ocean processes on distribution, abundance, and diversity of zooplankton communities were studied over the continental shelf in the northern Gulf of Mexico (GoM) from 2015 to 2017. Zooplankton sampling was conducted on four summer cruises in the northcentral GoM. Sampling was designed in waters potentially influenced by the Loop Current (LC) and/or Mississippi River discharge to assess the impacts of these two mesoscale features on the abundance and diversity of zooplankton. During the three-year study, the LC displayed distinct spatial-temporal variations in penetration and occurrence in the northern GoM. Environmental conditions (i.e., sea surface temperature, salinity, and dissolved oxygen) varied between months and years sampled, and were significantly different among cruises (ANOVA, p < 0.001). The majority of zooplankton consisted of calanoid copepods (65% ± 7.2%, mean ± SD), while non-copepod taxa were primarily chaetognaths, polychaetes, tunicates, and ostracods (23 ± 9.2%). Species abundance and diversity of zooplankton were significantly correlated with sea surface temperature, salinity, and dissolved oxygen (p < 0.05). Canonical correspondence analysis displayed significant associations between mesoscale features and dominant zooplankton groups among cruises and by taxa (Monte Carlo Permutation Test, p < 0.001). In addition, non-metric multidimensional scaling indicated that zooplankton assemblages were distinct, likely caused by Mississippi River plumes during the study period. As one of the few efforts to examine zooplankton dynamics at a low taxon level over the GoM continental shelf regarding the impact of mesoscale features, this study revealed seasonal (i.e. summer) and spatial patterns in distribution, abundance, and diversity of zooplankton communities subjected to the dynamic physicochemical conditions in the northern GoM, which will continue in a changing climate.
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