ABSTRACT This study investigated the presence of ectoparasites in stranded cetaceans along the coast of Sergipe, Brazil. The parasitological material, dates and informations about the hosts was obtained from a biological collection. Were analysed four Megaptera novaeangliae, one of Sotalia guianensis, and one of Peponocephala electra. A total of 264 ectoparasites were collected from these carcasses – 263 amphipods of the species Cyamus boopis and Syncyamus ilheusensis, and a single cymothoid isopod, identified as Livoneca redmanii. C. boopis showed a average intensity of 77.0 parasites per host, and a prevalence of 100% in the analysed humpback whale carcasses, representing the first record of this louse species on humpback whales in the region. S. ilheusensis appears to have a rare occurrence and specificity to the host P. electra, being its third report in the scientific literature. Additionally, the discovery of the isopod L. redmanii on Sotalia guianensis is unprecedented, being the first report of an isopod parasitizing this cetacean and expanding our knowledge about the host flexibility of this ectoparasite. The attachment of the isopod to the dolphin's skin was likely favored by the absence of mucus, as found in fish. These findings provide new insights into the ecology of these ectoparasites.