Normalized Difference Spectral Index Research Articles

Reflections of stress: Ozone damage in broadleaf saplings can be identified from hyperspectral leaf reflectance

Tropospheric ozone (O3) causes widespread damage to vegetation; however, monitoring of O3 induced damage is often reliant on manual leaf inspection. Reflectance spectroscopy of vegetation can identify and detect unique spectral signatures of different abiotic and biotic stressors. In this study, we tested the use of hyperspectral leaf reflectance to detect O3 stress in alder, beech, birch, crab apple, and oak saplings exposed to five long-term O3 regimes (ranging from daily target maxima of 30 ppb O3 to 110 ppb). Hyperspectral reflectance varied significantly between O3 treatments, both in whole spectra analysis and when simplified to representative components. O3 damage had a multivariate impact on leaf reflectance, underpinned by changes in pigment balance, water content and structural composition. Vegetation indices derived from reflectance which characterised the visible green peak were able to differentiate between O3 treatments. Iterative normalised difference spectral indices across the hyperspectral wavelength range were correlated to visual damage scores to identify significant wavelengths for O3 damage detection. We propose a new Ozone Damage Index (OzDI), which characterises the reflectance peak in the shortwave infrared region and outperformed existing vegetation indices in terms of correlation to O3 treatment. These results demonstrate the potential application of hyperspectral reflectance as a high throughput method of O3 damage detection in a range of common broadleaf.species.

Hyperspectral Imaging Spectroscopy for Non-Destructive Determination of Grape Berry Total Soluble Solids and Titratable Acidity

Wine grape quality heavily influences the price received for a product. Hyperspectral imaging has the potential to provide a non-destructive technique for predicting various enological parameters. This study aims to explore the feasibility of applying hyperspectral imaging to measure the total soluble solids (TSS) and titratable acidity (TA) in wine grape berries. A normalized difference spectral index (NDSI) spectral preprocessing method was built and compared with the conventional preprocessing method: multiplicative scatter correction and Savitzky–Golay smoothing (MSC+SG). Different machine learning models were built to examine the performance of the preprocessing methods. The results show that the NDSI preprocessing method demonstrated better performance than the MSC+SG preprocessing method in different classification models, with the best model correctly classifying 93.8% of the TSS and 84.4% of the TA. In addition, the TSS can be predicted with moderate performance using support vector regression (SVR) and MSC+SG preprocessing with a root mean squared error (RMSE) of 0.523 °Brix and a coefficient of determination (R2) of 0.622, and the TA can be predicted with moderate performance using SVR and NDSI preprocessing (RMSE = 0.19%, R2 = 0.525). This study demonstrates that hyperspectral imaging data and NDSI preprocessing have the potential to be a method for grading wine grapes for producing quality wines.

Selection of Spectral Parameters and Optimization of Estimation Models for Soil Total Nitrogen Content during Fertilization Period in Apple Orchards

The rapid and accurate diagnosis of nitrogen content in apple orchard soil is of great significance for the rational application of nitrogen fertilizer in orchards to improve apple yield and quality. An apple orchard in Shuangquan Town, Changqing District, Jinan City, Shandong Province, was taken as the experimental area. The optimal method for extracting spectral characteristic bands and screening spectral characteristic indices (SCIs) of soil total nitrogen (TN) for independent and comprehensive fertilization periods was explored. Independent and comprehensive soil TN content estimation models were constructed and optimized for each and the entire fertilization period, respectively. The results show that compared with the correlation coefficient method, stepwise multiple linear regression (SMLR) performs better in extracting hyperspectral characteristic bands of soil TN content. It helps to achieve a higher modeling accuracy, smaller root mean square error (RMSE), and is more conducive to avoiding the influence of multicollinearity of model variables. The sensitive areas of soil TN content in the SCI do not undergo significant changes due to different fertilization periods. Among them, the ratio spectral indices (RSIs) are in the range of 800–900 nm, 1900–1950 nm, and 2200–2300 nm, while the sensitive areas of the difference spectral index (DI) and Normalized difference spectral index (NDSI) are in the range of 1900–1950 nm and 2200–2300 nm. The combination of SCI and characteristic bands significantly improves the prediction accuracy of soil TN estimation models. The independent and comprehensive estimation models for each fertilization period based on the BP (back propagation) neural network optimized by the Mind Evolution Algorithm (MEA-BPNN) can achieve a more stable and accurate estimation of soil TN. Finally, using soil spectral characteristic bands selected through continuum removal (CR) transformation and SMLR, combined with SCI, the model based on the MEA-BPNN (CR-SCI-MEA-BPNN) has the best prediction performance. The modeling determination coefficients R2 for each fertilization period reached 0.94, 0.95, 0.92, and 0.94, respectively, with RMSE of 0.0032, 0.0024, 0.0035, and 0.0027. The R2 and RMSE of the modeling and validation set of the entire fertilization period comprehensive model are 0.899, 0.0038, and 0.89, 0.0041, respectively. The results of this article provide technical support for promoting the timely monitoring of soil TN content and guiding rational fertilization in apple orchards.

Estimation of the Relative Chlorophyll Content of Carya illinoensis Leaves Using Fractional Order Derivative of Leaf and Canopy Scale Hyperspectral Data

Chlorophyll is a crucial physiological and biochemical indicator that impacts plant photosynthesis, accumulation of photosynthetic products, and final yield. The measurement and analysis of chlorophyll content in plants can provide valuable insights into their nutritional status and overall health. The non-destructive and efficient estimation of relevant plant physiological and biochemical indicators using hyperspectral technology can provide a reliable method for collecting data on nutrient levels and health status during plant growth and development. Fifty-three Carya illinoensis plants of Jiande and Changlin series known for their exceptional qualities and significant economic benefits were used as the research object for collecting their leaf and canopy hyperspectral data. Firstly, fractional order derivative (FOD) was used for spectral preprocessing. Secondly, the spectral response relationship between spectrum and relative chlorophyll content (soil and plant analyzer development, SPAD) was explored by combining single-band and two-band spectral index (normalized difference spectral index, NDSI). The correlation coefficient of Pearson correlation analysis was used to estimate the linear correlation between variables. Finally, the correlation between the spectral feature variables and SPAD was analyzed and calculated. Top 10 absolute values of the correlation coefficients were screened out as modeling variables. eXtreme gradient boosting (XGBoost) machine learning algorithm was used to construct the optimal estimation model of SPAD of Carya illinoensis leaves. Results showed that the correlation between leaf and canopy spectrum after FOD pretreatment and SPAD was substantially improved, compared with raw spectrum. FOD combined with leaf and canopy NDSI was more effective than single band in improving the correlation between spectral characteristics and target components, which was increased by 0.166 and 0.338, respectively. The leaf spectrum could estimate SPAD more accurately than that of canopy spectrum. The optimal SPAD model was the 0.5th-order derivative transformation combined with two-band leaf spectral index (NDSI) model. The R2 P was 0.788, and the RMSEP was 0.842 in prediction set. On one hand, this study confirms the feasibility of rapid and non-destructive estimation of SPAD of Carya illinoensis leaves using hyperspectral technology. On the other hand, FOD combined with two-band spectral indices can significantly improve the response relationship between spectral characteristics and target variables, enrich hyperspectral data processing methods, and propose a novel approach for the detection of plant nutrient level and health.

Detection and Analysis of Chili Pepper Root Rot by Hyperspectral Imaging Technology

The objective is to develop a portable device capable of promptly identifying root rot in the field. This study employs hyperspectral imaging technology to detect root rot by analyzing spectral variations in chili pepper leaves during times of health, incubation, and disease under the stress of root rot. Two types of chili pepper seeds (Manshanhong and Shanjiao No. 4) were cultured until they had grown two to three pairs of true leaves. Subsequently, robust young plants were infected with Fusarium root rot fungi by the root-irrigation technique. The effective wavelength for discriminating between distinct stages was determined using the successive projections algorithm (SPA) after capturing hyperspectral images. The optimal index related to root rot between each normalized difference spectral index (NDSI) was obtained using the Pearson correlation coefficient. The early detection of root rot illness can be modeled using spectral information at effective wavelengths and in NDSI, together with the application of partial least squares discriminant analysis (PLS-DA), least squares support vector machine (LSSVM), and back-propagation (BP) neural network technology. The SPA-BP model demonstrates outstanding predictive capabilities compared with other models, with a classification accuracy of 92.3% for the prediction set. However, employing SPA to acquire an excessive number of efficient wave-lengths is not advantageous for immediate detection in practical field scenarios. In contrast, the NDSI (R445, R433)-BP model uses only two wavelengths of spectral information, but the prediction accuracy can reach 89.7%, which is more suitable for rapid detection of root rot. This thesis can provide theoretical support for the early detection of chili root rot and technical support for the design of a portable root rot detector.

Detection of Aphid-Infested Mustard Crop Using Ground Spectroscopy

Timely detection of pest infestation in agricultural crops plays a pivotal role in the planning and execution of pest management interventions. In this study, a ground measured electromagnetic spectrum through hyperspectral sensing (400–2500 nm) was conducted in healthy and aphid-infested mustard crops in different regions of the Bharatpur district of Rajasthan state, India. The ground measured hyperspectral reflectance and its derivatives during the mustard aphid infestation period were used to identify the sensitive spectral regions in the electromagnetic spectrum concerning Aphid Infestation Severity Grade (AISG) to discriminate Lipaphis-infested mustard crops from the healthy ones. Further Principal Component Analysis (PCA) and Partial Least Square Regression (PLSR) were utilized to identify specific spectral bands to differentiate the healthy from aphid-infested crops. The spectral regions of 493–497 nm (blue), 509–515 nm (green), 690–714 nm (red), 717–721 nm (red edge), and 752–756 nm (NIR) showed high correlation with AISG for reflectance, first and second order derivatives. Further analysis of the spectra using PCA and PLSR indicated that spectral bands of 679 nm, 746 nm, and 979 nm had high sensitivity for discriminating aphid-infested crops from the healthy ones. Average reflectance and various spectral indices such as ratio spectral index (RSI), difference spectral index (DSI), and normalized difference spectral index (NDSI) of identified spectral regions and absolute reflectance of identified specific spectral bands were used for predicting AISG. Several regression models, including PCR and PLSR, were examined to predict the AISG. PLSR was found to better predict infestation grade with RMSE of 0.66 and r2 0.71. Our outcomes counseled that hyperspectral reflectance data have the ability to detect aphid-infested severity in mustard.

On-Site Evaluation of Constituent Content and Functionality of Perilla frutescens var. crispa Using Fluorescence Spectra.

Perilla frutescens leaves are hypothesized to possess antioxidant and amyloid-β (Aβ) aggregation inhibitory properties primarily due to their polyphenol-type compounds. While these bioactivities fluctuate daily, the traditional methods for quantifying constituent contents and functional properties are both laborious and impractical for immediate field assessments. To address this limitation, the present study introduces an expedient approach for on-site analysis, employing fluorescence spectra obtained through excitation light irradiation of perilla leaves. Standard analytical techniques were employed to evaluate various constituent contents (chlorophyl (Chl), total polyphenol content (TPC), total flavonoid content (TFC), and rosmarinic acid (RA)) and functional attributes (DPPH radical scavenging activity, ferric reducing antioxidant power (FRAP), oxygen radical absorbance capacity (ORAC), and Aβ aggregation inhibitory activity). Correlations between the fluorescence spectra and these parameters were examined using normalized difference spectral index (NDSI), ratio spectral index (RSI), and difference spectral index (DSI) analyses. The resulting predictive model exhibited a high coefficient of determination, with R2 values equal to or greater than 0.57 for constituent contents and 0.49 for functional properties. This approach facilitates the convenient, simultaneous, and nondestructive monitoring of both the chemical constituents and the functional capabilities of perilla leaves, thereby simplifying the determination of optimal harvest times. The model derived from this method holds promise for real-time assessments, indicating its potential for the simultaneous evaluation of both constituents and functionalities in perilla leaves.

Evaluation of forage quality in a pea breeding program using a hyperspectral sensing system

Forage quality evaluation is essential in breeding and selecting forage crops to improve livestock health and reduce greenhouse gas emissions. A non-destructive and high-throughput process to assess forage quality can advance cultivar development research and commercial feed analysis. The overall objective of this study was to estimate 12 biomass quality traits of field peas in the 2019 and 2020 field seasons using in-field hyperspectral spectroscopy (350–2500 nm) at the leaf level. Six machine-learning models were utilized to develop the relationships between each quality trait and four feature extraction datasets (first derivative reflectance data, vegetation indices, normalized difference spectral indices, and ratio spectral indices) of leaf reflectance spectra from the hyperspectral data. The high and consistent performance of all quality traits was produced from only ridge regression, elastic net regression, and random forest regression models in first derivative reflectance and vegetation indices datasets. In addition, higher prediction performance (0.81 < R2 < 0. 93; 0.05 < root mean square error (%) < 1.80; 0.03 < mean absolute error (%) < 1.32) was found in the random forest model using normalized difference spectral indices and ratio spectral indices datasets after utilizing a feature selection technique (leave one feature out). The results suggest that the proposed evaluation approach of spectroscopy may be applied to predict field pea quality traits in a timely fashion to assist breeders and farmers in their decision-making.

A High-Precision Remote Sensing Identification Method on Saline-Alkaline Areas Using Multi-Sources Data

Soil salinization is a widespread and important environmental problem. We propose a high-precision remote sensing identification method for saline-alkaline areas using multi-source data, a method which is of some significance for improving ecological and environmental problems on a global scale which have been caused by soil salinization. Its principle is to identify saline-alkaline areas from remote sensing imagery by a decision tree model combining four spectral indices named NDSI34 (Normalized Difference Spectral Index of Band 3 and Band 4), NDSI25 (Normalized Difference Spectral Index of Band 2 and Band 5), NDSI237 (Normalized Difference Spectral Index of Band 3 and Band 4) and NDSInew (New Normalized Difference Salt Index) that can distinguish saline-alkaline areas from other features. In this method, the complementary information within the multi-source data is used to improve classification accuracy. The main steps of the method include multi-source data acquisition, adaptive feature fusion of multi-source data, feature identification and integrated expression of the saline-alkaline area from multi-source data, fine classification of the saline-alkaline area, and accuracy verification. Taking Minqin County, Gansu Province, China as the study area, we use the method to identify saline-alkaline areas based on GF-2, GF-6/WFV and DEM data. The results show that the overall accuracy of the method is 88.11%, which is 7.69% higher than that of the traditional methods, indicating that it could effectively identify the distribution of saline-alkaline areas, and thus provide a scientific technique for the quick identification of saline-alkaline areas in large regions.

Rice Yield Prediction in Different Growth Environments Using Unmanned Aerial Vehicle-Based Hyperspectral Imaging

There are certain growth stages and spectral regions that are optimal for obtaining a high accuracy in rice yield prediction by remote sensing. However, there is insufficient knowledge to establish a yield prediction model widely applicable for growth environments with different meteorological factors. In this study, high temporal resolution remote sensing using unmanned aerial vehicle-based hyperspectral imaging was performed to improve the yield prediction accuracy of paddy rice cultivated in different environments. The normalized difference spectral index, an index derived from canopy reflectance at any two spectral bands, was used for a simple linear regression analysis to estimate the optimum stage and spectral region for yield prediction. Although the highest prediction accuracy was obtained from the red-edge and near-infrared regions at the booting stage, the generalization performance for different growth environments was slightly higher at the heading stage than at the booting stage. The coefficient of determination and the root mean squared percentage error for the heading stage were R2 = 0.858 and RMSPE = 7.52%, and they were R2 = 0.853 and RMSPE = 9.22% for the booting stage, respectively. In addition, a correction by solar radiation was ineffective at improving the prediction accuracy. The results demonstrate the possibility of establishing regression models with a high prediction accuracy from a single remote sensing measurement at the heading stage without using meteorological data correction.

UAV Multisensory Data Fusion and Multi-Task Deep Learning for High-Throughput Maize Phenotyping.

Recent advances in unmanned aerial vehicles (UAV), mini and mobile sensors, and GeoAI (a blend of geospatial and artificial intelligence (AI) research) are the main highlights among agricultural innovations to improve crop productivity and thus secure vulnerable food systems. This study investigated the versatility of UAV-borne multisensory data fusion within a framework of multi-task deep learning for high-throughput phenotyping in maize. UAVs equipped with a set of miniaturized sensors including hyperspectral, thermal, and LiDAR were collected in an experimental corn field in Urbana, IL, USA during the growing season. A full suite of eight phenotypes was in situ measured at the end of the season for ground truth data, specifically, dry stalk biomass, cob biomass, dry grain yield, harvest index, grain nitrogen utilization efficiency (Grain NutE), grain nitrogen content, total plant nitrogen content, and grain density. After being funneled through a series of radiometric calibrations and geo-corrections, the aerial data were analytically processed in three primary approaches. First, an extended version normalized difference spectral index (NDSI) served as a simple arithmetic combination of different data modalities to explore the correlation degree with maize phenotypes. The extended NDSI analysis revealed the NIR spectra (750-1000 nm) alone in a strong relation with all of eight maize traits. Second, a fusion of vegetation indices, structural indices, and thermal index selectively handcrafted from each data modality was fed to classical machine learning regressors, Support Vector Machine (SVM) and Random Forest (RF). The prediction performance varied from phenotype to phenotype, ranging from R2 = 0.34 for grain density up to R2 = 0.85 for both grain nitrogen content and total plant nitrogen content. Further, a fusion of hyperspectral and LiDAR data completely exceeded limitations of single data modality, especially addressing the vegetation saturation effect occurring in optical remote sensing. Third, a multi-task deep convolutional neural network (CNN) was customized to take a raw imagery data fusion of hyperspectral, thermal, and LiDAR for multi-predictions of maize traits at a time. The multi-task deep learning performed predictions comparably, if not better in some traits, with the mono-task deep learning and machine learning regressors. Data augmentation used for the deep learning models boosted the prediction accuracy, which helps to alleviate the intrinsic limitation of a small sample size and unbalanced sample classes in remote sensing research. Theoretical and practical implications to plant breeders and crop growers were also made explicit during discussions in the studies.

Airborne hyperspectral and Sentinel imagery to quantify winter wheat traits through ensemble modeling approaches

Early prediction of crop production by remote sensing (RS) may help to plan the harvest and ensure food security. This study aims to improve the quantification of yield, grain protein concentration (GPC), and nitrogen (N) output in winter wheat with RS imagery. Ground-truth wheat traits were measured at flowering and harvest in a field experiment combining four N and two water levels in central Spain over 2 years. Hyperspectral and thermal airborne images coincident with Sentinel-1 and Sentinel-2 were acquired at flowering. A parametric linear model using all hyperspectral normalized difference spectral indices (NDSI) and two non-parametric models (artificial neural network and random forest) were used to assess their estimation ability combining NDSIs and other RS indicators. The feasibility of using freely available multispectral satellite was tested by applying the same methodology but using Sentinel-1 and Sentinel-2 bands. Yield estimation obtained the highest R2 value, showing that the visible and short-wave infrared region (VSWIR) had similar accuracy to the hyperspectral and Sentinel-2 imagery (R2 ≈ 0.84). The SWIR bands were important in the GPC estimation with both sensors, whereas N output was better estimated using red-edge-based NDSIs, obtaining satisfactory results with the hyperspectral sensor (R2 = 0.74) and with the Sentinel-2 (R2 = 0.62). When including the Sentinel-2 SWIR index, the NDSI (B11, B3) improved the estimation of N output (R2 = 0.71). Ensemble models based on Sentinel were found to be as reliable as those based on hyperspectral imagery, and including SWIR information improved the quantification of N-related traits.

A Normalized Spectral Angle Index for Estimating the Probability of Viewing Sunlit Leaves From Satellite Data

The probability of viewing sunlit leaves (PT) is a crucial variable influencing observed canopy spectra. Proper determination of PT is necessary for the quantitative retrieval of vegetation parameters using remote sensing. This paper describes a spectral index for estimating PT from satellite-observed canopy spectra. For this purpose, we propose a normalized spectral angle index (NSAI) at near-infrared (NIR) wavelengths, based on the spectral shapes of leaf and soil background. The performance of NSAI in estimating PT was evaluated using one ground-based high-resolution imaging dataset, one synthetic satellite dataset, and one satellite-ground synchronous observation dataset. The results demonstrate that NSAI is more suitable for estimating PT from satellite data than five commonly used spectral indices, including Enhanced Vegetation Index (EVI), Normalized Difference Spectral Index (NDSI), Normalized Difference Vegetation Index (NDVI), Simple Ratio Index (SR), and Photochemical Reflectance Index (PRI). NSAI exhibits a significant linear correlation with PT. The empirical model for estimating PT based on NSAI has the best transferability from simulated to <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">in situ</i> satellite data. For the fine spectral-spatial resolution (Hyperion) data, the normalized Root Mean Square Error (nRMSE) and adjusted R <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> of estimated PT were 14.9% and 0.744, respectively. For MODIS images, PT was estimated with satisfactory accuracy, with an nRMSE of 18.71% and an adjusted R <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> of 0.670. NSAI is potentially applicable to satellite images for direct estimation of PT to improve the inversion accuracy of vegetation parameters.

Inversion of Wheat Leaf Area Index by Multivariate Red-Edge Spectral Vegetation Index

Leaf area index (LAI) is an important parameter that determines the growth status of winter wheat and impacts the ecological and physical processes of plants in ecosystems. The problem of spectral saturation of winter wheat LAI at the booting stage was easily caused by the inversion of the univariate red-edge spectral vegetation index constructed by the red-edge band. In this paper, a new method that the univariate red-edge spectral vegetation index constructed in the red-edge band is used to invert the spectral saturation of the winter wheat LAI. The multivariable red-edge spectral vegetation index is used to invert the winter wheat LAI. This method can effectively delay the phenomenon of spectral saturation and improve the inversion precision. In this study, the Sentinel-2 data were used to invert the winter wheat LAI. An univariate and multivariate red-edge spectral vegetation index regression model was constructed based on the Red-edge Normalized Difference Spectral Indices 1 (NDSI1), Red-edge Normalized Difference Spectral Indices 2 (NDSI2), Red-edge Normalized Difference Spectral Indices 3 (NDSI3), Modified Chlorophyll Absorption Ratio Index (MCARI), MERIS Terrestrial Chlorophyll Index (MTCI), Transformed Chlorophyll Absorption in Reflectance Index (TCARI), and Transformed Chlorophyll Absorption in Reflectance Index/the optimized soil adjusted vegetation index (TCARI/OSAVI). Based on the correlation coefficient, the coefficient of determination (R2), the root mean square error (RMSE) and noise equivalent value (NE), the best model was selected and verified to generate an inverted map. The results showed that the multivariable red-edge spectral vegetation index of NDSI1 + NDSI2 + NDSI3 + TCARI/OSAVI + MCARI + MTCI + TCARI was the best model for inverting the winter wheat LAI. The R2, the RMSE and the NE values were all satisfied the requirements of the inversion precision (R2 = 0.8372/0.8818, RMSE = 0.2518/0.1985, NE = 5/5). In summary, this method can be used to judge the growth of winter wheat and provide an accurate basis for monitoring crop growth.

Nitrogen Inversion Model in a Wetland Environment Based on the Canopy Reflectance of Emergent Plants

Reuse of reclaimed water in constructed wetlands is a promising way to conserve water resources and improve water quality, and it is playing a very important role in wetland restoration and reconstruction. This study utilized reflectance spectra of wetland vegetation to estimate nitrogen content in water in the Beijing Bai River constructed wetland, a typically constructed wetland that uses reclaimed water. Canopy reflectance spectra of two dominant plants in the wetland, including reed and cattail, were acquired using a spectrometer (350–2500 nm). Simultaneously, water samples were collected to measure water quality. To establish the appreciate relationship between total nitrogen content (TN) and reflectance spectra, both simple and multiple regression models, including simple ration spectral index (SR), normalized difference spectral index (ND), stepwise multiple linear regression (SMLR) model, and partial least squares regression (PLSR), were adopted in this study. The results showed that (1) compared with simple regression models (SR and ND), multiple regressions models (SMLR and PLSR) could provide a more accurate estimation of TN concentration in the wetland environment. Among these models, the PLSR model had the highest accuracy and was proven to be the most useful tool to reveal the relationship between the spectral reflectance of wetland plants and the total nitrogen consistency of wetland at the canopy scale. (2) The inversion effect of TN concentration in water is slightly better than that of wetland vegetation, and the reflection spectrum of the reed can predict TN concentration more accurately than that of cattail. The finding not only provides solid evidence for the potential application of remote sensing to detect water eutrophication but also enhances our understanding of the monitoring and management of water quality in urban wetlands using recycled water.

Improving water status prediction of winter wheat using multi-source data with machine learning

Water and nitrogen (N) are the most important factors limiting crop productivity. Effective monitoring of the water status of winter wheat under different N treatments is imperative for precision irrigation in improved crop management. Hyperspectral remote sensing is widely used for monitoring the crop water status. However, changes in canopy architecture during ontogeny lead to poor inversion of crop properties and limit the use of spectral indices. This study aimed to improve the water status prediction of winter wheat using multi-source data with machine learning (ML). Two multi-irrigation levels (0, 120, 240, 360 mm) and N rates (75, 225 kg N ha-1) experiments were conducted during the 2019–2021 wheat growing seasons under field conditions using a rainout shelter. Hyperspectral, soil, plant, and climate data were evaluated with two feature selection methods. Selected results were chosen as input variables for prediction models by using three ML algorithms. By constructing the normalized difference spectral index (NDSI), ratio spectral index (RSI), and difference spectral index (DSI), the DSI(2015, 2375), NDSI(2175, 2245), and RSI(720, 1200) showed the strongest correlation with canopy water content (CWC), plant water content (PWC), and canopy equivalent water thickness (CEWT), respectively. The best feature selection method and data were delivered by the Pearson correlation coefficient together with the soil, plant, and climate data. The best performing ML algorithm for CWC and PWC prediction was RF, while SVM was the best ML algorithm for CEWT prediction. The R2 of the optimal models ranged from 0.86 to 0.97. These models with multi-source data significantly improved the prediction accuracy of the water status and can thus assist in precision irrigation management of winter wheat.

Spectral Estimation of In Vivo Wheat Chlorophyll a/b Ratio under Contrasting Water Availabilities

To meet the ever-growing global population necessities, integrating climate-change-relevant plant traits into breeding programs is required. Developing new tools for fast and accurate estimation of chlorophyll parameters, chlorophyll a (Chl-a) content, chlorophyll b (Chl-b) content, and their ratio (Chl-a/b), can promote breeding programs of wheat with enhanced climate adaptability. Spectral reflectance of leaves is affected by changes in pigment concentration and can be used to estimate chlorophyll parameters. The current study identified and validated the top known spectral indices and developed new vegetation indices (VIs) for Chl-a and Chl-b content estimation and used them to non-destructively estimate Chl-a/b values and compare them to hyperspectral estimations. Three wild emmer introgression lines, with contrasting drought stress responsiveness dynamics, were selected. Well-watered and water-limited irrigation regimes were applied. The wheat leaves were spectrally measured with a handheld spectrometer to acquire their reflectance in the 330 to 790 nm range. Regression models based on calculated VIs as well as all hyperspectral curves were calibrated and validated against chlorophyll extracted values. The developed normalized difference spectral indices (NDSIs) resulted in high accuracy of Chl-a (NDSI415,614) and Chl-b (NDSI406,525) estimation, allowing for indirect non-destructive estimation of Chl-a/b with root mean square error (RMSE) values that could fit 6 to 10 times in the range of the measured values. They also performed similarly to the hyperspectral models. Altogether, we present here a new tool for a non-destructive estimation of Chl-a/b, which can serve as a basis for future breeding efforts of climate-resilient wheat as well as other crops.

Desiccation of the Transboundary Hamun Lakes between Iran and Afghanistan in Response to Hydro-climatic Droughts and Anthropogenic Activities

This paper investigates the hydro-climatic reasons behind the desiccation of the Hamun Lakes in the Iran-Afghanistan border. We analyzed changes in the flow of the Hirmand River (90 percent of the total inflow to the lakes) at the international border, and precipitation over this river’s sub-basin during 1960–2016 by calculating standardized indices for precipitation (SPI) and discharge (SDI). We applied Normalized Difference Spectral Indices using satellite images from 1987 to 2021 to observe monthly areal change of the lakes. The results show that the major cause of desiccation is upstream water regulation which severely reduced the Hirmand River inflow delivery to the lakes. Constructed reservoirs near the lakes by Iran in 2008, compounded the effect of Afghanistan water regulation to aggravate the situation. There is a discernible shift in the relation between the Hirmand River flow at the border and upstream precipitation before and after 2004. In 1960–2003, high Hirmand River inflows were expected due to high precipitation, while the flow declined after 2004 despite large amounts of upstream precipitation. Although a long period of drought from 1998 to 2004 decreased the lakes’ area, the lake system is primarily falling victim to anthropogenic flow reduction recently. Increased regulation of flows and use of water for irrigation in Afghanistan and Iran underscores the necessity of bilateral dialogues between the two countries to consider environmental flow for the lakes. The lakes’ shrinkage places socio-economic stress on an already-vulnerable region with public health implications as the exposed lake beds turn into major sources of dust storms.

Dynamic Harvest Index Estimation of Winter Wheat Based on UAV Hyperspectral Remote Sensing Considering Crop Aboveground Biomass Change and the Grain Filling Process

The crop harvest index (HI) is of great significance for research on the application of crop variety breeding, crop growth simulation, crop management in precision agriculture and crop yield estimation, among other topics. To obtain spatial information on the crop dynamic HI (D-HI), taking winter wheat as the research object and fully considering the changes in crop biomass and the grain filling process from the flowering period to the maturity period, the dynamic fG (D-fG) parameter was estimated as the ratio between the aboveground biomass accumulated in different growth periods, from the flowering stage to the maturity stage, and the aboveground biomass in the corresponding periods. Based on the D-fG parameter estimation using unmanned aerial vehicle (UAV) hyperspectral remote sensing data, a technical method for obtaining spatial information on the winter wheat D-HI was proposed and the accuracy of the proposed method was verified. A correlation analysis was performed between the normalized difference spectral index (NDSI), which was calculated using pairs of any two bands of the UAV hyperspectral spectrum, and the measured D-fG. Based on this correlation analysis, the center of gravity of the local maximum region of R2 was used to determine the sensitive band center to accurately estimate D-fG. On this basis, remote sensing estimation of the D-fG was realized by using the NDSI constructed by the sensitive hyperspectral band centers. Finally, based on the D-fG remote sensing parameters and the D-HI estimation model, spatial information on the D-HI of winter wheat was accurately obtained. The results revealed five pairs of sensitive hyperspectral band centers (i.e., λ(476 nm, 508 nm), λ(444 nm, 644 nm), λ(608 nm, 788 nm), λ(724 nm, 784 nm) and λ(816 nm, 908 nm)) for D-fG estimation, and the results of the D-fG remote sensing estimation showed high precision. The root mean square error (RMSE) was between 0.0436 and 0.0604, the normalized RMSE (NRMSE) was between 10.31% and 14.27% and the mean relative error (MRE) was between 8.28% and 12.55%. In addition, the D-fG parameter estimation, using the NDSI constructed by the above five sensitive remote sensing band centers, yielded highly accurate spatial D-HI information with an RMSE between 0.0429 and 0.0546, an NRMSE between 9.87% and 12.57% and an MRE between 8.33% and 10.90%. The D-HI estimation results based on the hyperspectral sensitive band centers λ(724 nm, 784 nm) had the highest accuracy, with RMSE, NRMSE and MRE values of 0.0429, 9.87% and 8.33%, respectively. The proposed method of acquiring spatial information on the winter wheat D-HI in this study was shown to be feasible, and it might provide a technical reference toward developing satellite-based indices to monitor large-scale crop HI information.

Detection of Apple Valsa Canker Based on Hyperspectral Imaging

Approximately half of the world’s apple production occurs in East Asia, where apple Valsa canker (AVC) is a prominent disease. This disease affects the bark of the tree, ultimately killing it and resulting in significant economic loss. Visual identification of the diseased area of the bark, particularly in the early stages, is extremely difficult. In this study, we conducted hyperspectral imaging of the trunks and branches of AVC-infected apple trees and revealed that the diseased area can be identified in the near-infrared reflectance, even when it is difficult to distinguish visually. A discriminant analysis using the Mahalanobis distance was performed on the normalized difference spectral index (NDSI) obtained from the measured spectral reflectance. A diagnostic model for discriminating between the healthy and diseased areas was created using the threshold value of NDSI. An accuracy assessment of the diagnostic model presented the overall accuracy as &gt;0.94 for the combinations of spectral bands at 660–690 nm and 720–760 nm. This simple diagnostic model can be applied to other tree bark canker diseases.