Anomaly scan on a 21 year old primigravida at 22 weeks showed absence of the superior portion of the calvarium with poorly defined cerebral tissue floating in the amniotic fluid. Maternal serum alphafetoprotein (MSAFP) at 18 weeks was 1.4 MOM. The patient was counseled for anencephaly and amniocentesis was performed. Biochemical data consisting of amniotic fluid alphafetoprotein (AFAFP) of 1.94 MOM with weak positive acetylcholinesterase (ACHE) was atypical of classic anencephaly; karyotype was 46, XX. Following termination, fetopsy showed a gaping cranial defect with protruding brain tissue, partially covered by attenuated translucent skin; meninges were torn and congested. Amniotic bands were identified explaining the cranial findings. Radial aplasia and imperforate anus further suggested VATER. While normal MSAFP can be seen with anencephaly, a normal AFAFP and weak positive ACHE are atypical. In the context of the post-mortem findings, it is presumed that without pregnancy termination, expansion of the cranial anomaly would have eventually lead to unequivocally abnormal biochemical results. This case suggests that alternative etiologies, in particular amniotic bands, be considered when atypical biochemical data is seen at midtrimester in the presence of apparent anencephaly.