The search for surface hydrocarbon seeps has historically served as a fundamental tool in the early stages of oil and gas exploration. However, as easily detectable surface hydrocarbon seeps become increasingly scarce, advancement in analytical capabilities have shifted the focus towards detecting ultra-trace levels of hydrocarbons, commonly referred to as microseepages. While it is critical to understand the distribution of hydrocarbon microseepage for assessing petroleum systems and optimizing exploration efforts, the role of sampling depth in the detection of microseepage remains poorly understood. In this study, we investigated the influence of sampling depth on microseepage detection, using passive soil-gas sampling techniques at depths ranging from 0.5 to 10 m at sites with hydrocarbon-bearing reservoirs and dry wells. Organic geochemical analysis, including thermal desorption-gas chromatography-mass spectrometry (GC-MS), was employed to identify and quantify hydrocarbon and nonhydrocarbon compounds.The study result demonstrates that sampling at the Minimal Interference Zone (MIZ) depths of 5 m or greater significantly mitigates the risk of interference signals, thereby enabling the identification and quantification of hydrocarbon microseepages at trace and ultra-trace concentrations. At these depths, the attenuation of non-hydrocarbon compounds was observed, making the hydrocarbon signal markedly more distinguishable. Geochemical characterization of the samples revealed spatial and vertical heterogeneity in the distribution of hydrocarbon compounds, indicative of variations in the microseepage mechanisms potentially influenced by factors such as sedimentary basin settings and secondary alterations associated with the vadose zone. By utilizing passive soil-gas sampling techniques coupled with GC-MS, this study emphasizes the importance of sampling depth to improve the detection of reliable microseepage signal while reducing interference and background noise. The proposed technique not only refines existing methodologies for petroleum system assessments but also paves the way for broader geological applications. Specifically, the approach offers critical insights for the development of high-resolution geochemical surveys adaptable for surface background profiling in CO2 sequestration projects to monitor for storage efficiency and seal integrity.