Recently, the High‐G MEMS accelerometer (HGMA) has been used in navigation, mechanical property detection, consumer electronics, and other fields widely. As the core component of a measuring system, it is very crucial to enhance the calibration accuracy of the accelerometer. In order to remove the noises in the accelerometer output signals to enhance its calibration accuracy, a combined denoising method which combines variational mode decomposition (VMD) with permutation entropy (PE) and wavelet threshold is given in this article. For the sake of overcoming the defect of signal distortion caused by the traditional denoising methods, this joint denoising method combines the good decomposition characteristics of VMD and the good denoising ability of wavelet threshold and introduces PE as a judgment criterion to achieve a good balance between denoising effect and signal fidelity. The combination of PE and VMD not only avoids the phenomenon of mode aliasing but also improves the ability to identify the noise components, which makes the wavelet threshold denoising more specific. Firstly, some intrinsic mode functions (IMFs) are obtained by using VMD to decompose the complex signal containing noise which is outputted from the accelerometer. Secondly, the IMF components can be divided into noise IMF components, mixed IMF components, and useful IMF components by PE algorithm. Thirdly, the noise IMF components can be discarded directly, and then the mixed IMF components can be denoised by wavelet threshold to obtain the noiseless IMF components; in addition, the useful IMF components need to be retained. Finally, the final denoising signal can be obtained by reconstructing the IMF components which have been denoised by the wavelet threshold and the useful IMF components retained before denoising. The experimental results prove that the combined denoising algorithm combines the merits of VMD, PE, and wavelet threshold, and this new algorithm has a good performance in the calibration denoising of accelerometer. Compared with the serious signal distortion caused by using only EMD or wavelet threshold, this method not only has a good denoising effect (the noises in the static part are eliminated by 99.97% and the SNR of the dynamic part is raised to 18.56) but also can maintain a good signal fidelity (the error of shock peak amplitude is 3.4%, the error of vibration peak amplitude is 0.4%, and the correlation coefficient between the denoising signals and dynamic part is as high as 0.982).
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