Rate Of Nitrate Assimilation Research Articles

Impact of Phycosphere-Isolated Marine Bacteria on Nutritional Value, Growth, and Nutrient Uptake of Co-Cultured Chaetoceros calcitrans

Microalgae offer distinct advantages as a nutritional source for aquaculture and as a means of wastewater bioremediation. Studying the phycosphere bacteria and understanding their complex interactions is essential to optimizing high-quality biomass growth. This study aimed to isolate, characterize, and identify bacteria from the phycosphere of marine microalgae and to determine their potential to enhance growth, metabolism, and bioremediation capabilities of Chaetoceros calcitrans in stress nutrient-poor media simulating aquaculture wastewater enriched with nitrate, nitrite, or phosphorus. Bacterial characterization included tests for auxin and siderophore production, biofilm formation, amylase activity, phosphate solubilization, mobility, and antagonism evaluation. When Alteromonas macleodii, Bacillus cereus, and Marinobacter sp. were selected and then enriched (107 CFU/mL) in co-culture with C. calcitrans, growth levels significantly increased in four of six Synthetic Aquaculture Wastewater (SAW) media. Pigment levels were higher in five of six SAW media, and lipid levels were higher in SAW rich in nitrite (SAWni50) and phosphorus (SAWpho50). In addition, C. calcitrans with or without the bacterial consortium demonstrated excellent phosphorus bioremediation, achieving 67.6% average removal in SAWpho50. Nitrate and nitrite assimilation rates were approximately 10% in SAWna and SAWni50. This study marks the inaugural identification of these bacteria as microalga growth-promoting bacteria (MGPB) for enhancing growth and lipid and pigment production in C. calcitrans, and it also documents a maximum of 69.13% phosphorus removal.

The Agulhas Current Transports Signals of Local and Remote Indian Ocean Nitrogen Cycling

AbstractThe greater Agulhas Current region is an important component of the climate system, yet its influence on carbon and nutrient cycling is poorly understood. Here, we use nitrate isotopes (δ15N, δ18O, Δ(15–18) = δ15N–δ18O) to trace regional water mass circulation and investigate nitrogen cycling in the Agulhas Current and adjacent recirculating waters. The deep and intermediate waters record processes occurring remotely, including partial nitrate assimilation in the Southern Ocean and denitrification in the Arabian Sea. In the thermocline and surface, tropically sourced waters are biogeochemically distinct from adjacent subtropically sourced waters, confirming inhibited lateral mixing across the current core. (Sub)tropical thermocline nitrate δ15N is lower (4.9–5.8‰) than the sub‐thermocline source, Subantarctic Mode Water (6.9‰); we attribute this difference to local N2 fixation. Using a one‐box model to simulate the newly fixed nitrate flux, we estimate a local N2 fixation rate of 7–25 Tg N.a−1, with the upper limit likely biased high. In the mixed layer, nitrate δ15N and δ18O rise in unison, indicating that phytoplankton nitrate assimilation dominates in surface waters, with nitrification restricted to deeper waters. Because nitrate assimilation and nitrification are vertically decoupled, the rate of nitrate assimilation plus N2 fixation can be used to approximate carbon export. Thermocline and mixed‐layer nitrate Δ(15–18) is low, due to both N2 fixation and coupled partial nitrate assimilation and nitrification. Similarly low‐Δ(15–18) nitrate in Agulhas rings indicates leakage of low‐δ15N nitrogen into the South Atlantic, which should be recorded in the organic matter sinking to the seafloor, providing a potential tracer of past Agulhas leakage.

Phytoplankton size-class contributions to new and regenerated production during the EXPORTS Northeast Pacific Ocean field deployment

The NASA EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) program was established to better quantify the pathways of the biological carbon pump in order to gain a more comprehensive understanding of global carbon export efficiency. The summer 2018 field campaign in the vicinity of Ocean Station Papa (Station P; 50°N, 145°W) in the Northeast Pacific Ocean yielded evidence of low phytoplankton biomass and primary productivity dominated by small cells (<5 µm) that are reliant on recycled nutrients. Using combined 13C/15N stable isotope incubations, we calculated an average depth-integrated dissolved inorganic carbon uptake (net primary production) rate of 23.1 mmol C m–2 d–1 throughout the euphotic zone with small cells contributing 88.9% of the total daily DIC uptake. Average depth-integrated NO3– uptake rates were 1.5 mmol N m–2 d–1 with small cells contributing 73.4% of the total daily NO3– uptake. Estimates of new and regenerated production fluctuated, with small cells continuing to dominate both forms of production. The daily mixed-layer f-ratio ranged from 0.17 to 0.38 for the whole community, consistent with previous studies, which indicates a predominance of regenerated production in this region, with small and large cells (≥5 μm) having average f-ratios of 0.28 and 0.82, respectively. Peak phytoplankton biomass, total primary productivity and new production occurred between Julian Days 238 and 242 of our observation period, driven primarily by an increase in carbon and nitrate assimilation rates without apparent substantial shifts in the phytoplankton size-class structure. Our findings demonstrate the importance of small cells in performing the majority of net primary production and new production and the modest productivity fluctuations that occur in this iron-limited region of the Northeast Pacific Ocean, driven by ephemeral increases in new production, which could have significant ramifications for carbon export over broad timescales.

The removal of nitrate reductase phosphorylation enhances tolerance to ammonium nitrogen deficiency in rice

Nitrate reductase (NR) is a key enzyme for nitrogen assimilation in plants, and its activity is regulated by posttranslational phosphorylation. To investigate the effects of dephosphorylation of the NIA1 protein on the growth and the physiological and biochemical characteristics of rice under different forms of nitrogen supplies, the phenotypes, nitrogen metabolism and reactive oxygen metabolism were measured in NIA1 phosphorylation site-directed mutant lines (S532D and S532A), an OsNia1 over-expression line (OE) and Kitaake (wild type, WT). Compared with WT and OE, S532D and S532A have stronger nitrogen assimilation capacities. When ammonium nitrate served as the nitrogen source, the plant heights, dry weights of shoots and chlorophyll (Chl) contents of S532D and S532A were lower than those of the WT and OE, whereas hydrogen peroxide (H2O2), malondialdehyde (MDA) and nitrite contents were higher. When potassium nitrate served as the nitrogen source, the plant heights, dry weights of shoots and Chl contents of S532D and S532A were higher than those of the WT and OE, there were no significant differences in the contents of H2O2 and MDA in the leaves of the test materials, and the difference in nitrite contents among different lines decreased. When ammonium sulfate served as the nitrogen source, there were no significant differences in the physiological indexes of the test materials, except NR activity. Compared with ammonium nitrate and ammonium sulfate, the content of NH4+-N in the leaves of each plant was lower when potassium nitrate was used as the nitrogen source. The qPCR results showed that OsGS and OsNGS1 were negatively regulated by downstream metabolites, and OsNrt2.2 was induced by nitrate. In summary, when ammonium nitrate served as the nitrogen source, the weak growth of NIA1 phosphorylation site-directed mutant lines was due to the toxicity caused by the excessive accumulation of nitrite. When potassium nitrate served as the nitrogen source, the assimilation rates of nitrate, nitrite and ammonium salt were accelerated in NIA1 phosphorylation site-directed mutant lines, which could provide more nitrogen nutrition and improve the tolerance of rice to ammonium nitrogen deficiency. These results could provide a possible method to improve the efficiency of nitrogen utilization in rice under low-nitrogen conditions.

High irradiation and low discharge promote the dominant role of phytoplankton in riverine nutrient dynamics

AbstractRivers play a relevant role in the nutrient turnover during the transport from land to ocean. Here, highly dynamic planktonic processes are more important compared to streams making it necessary to link the dynamics of nutrient turnover to control mechanisms of phytoplankton. We investigated the basic conditions leading to high phytoplankton biomass and corresponding nutrient dynamics in eutrophic, 8th order River Elbe (Germany). In a first step, we performed six Lagrangian sampling campaigns in the lower river section at different hydrological conditions. While nutrient concentrations remained high at low algal densities in autumn and at moderate discharge in summer, high algal concentrations occurred at low discharge in summer. Under these conditions, concentrations of silica and nitrate decreased and rates of nitrate assimilation were high. Soluble reactive phosphorus was depleted and particulate phosphorus increased inversely. Rising molar C:P ratios of seston indicated a phosphorus limitation of phytoplankton, so far rarely observed in eutrophic large rivers. Global radiation combined with mixing depth had a strong predictive power to explain maximum chlorophyll concentration. In a second step, we estimated nutrient turnover exemplarily for N during the campaign with the lowest discharge based on mass balances and metabolism‐based process measurements. Mass balance calculations revealed a total nitrate uptake of 423 mg N m−2d−1. Increasing phytoplankton density dominantly explained whole river gross primary production and related assimilatory nutrient uptake. In conclusion, riverine nutrient uptake strongly depends on the growth conditions for phytoplankton, which are favored at high irradiation and low discharge.

Towards a trait-based understanding of Symbiodiniaceae nutrient acquisition strategies

Symbiodiniaceae is a diverse group of dinoflagellates that form symbioses with marine invertebrates, provisioning energy and nutrients for their hosts. Symbiont diversity is a well-known predictor of host fitness and stress tolerance. Yet, we have a limited understanding of the mechanisms by which in hospite symbiont communities are structured. Therefore, we hypothesized that phylogenetic differences in nitrogen assimilation may affect symbiont dominance, as has been demonstrated in phytoplankton communities. Here, we quantified species-specific rates of nitrate assimilation using stable isotope labeling, and investigated key traits that have been adopted in phytoplankton ecology to explain the fundamental concept of nitrogen acquisition strategies and size-related trade-offs in Symbiodiniaceae. Traits related to structure and function were measured to look for convergent ecological strategies. Despite the limited sample size, we could distinguish two groups among the five species of Symbiodiniaceae with features described by the phytoplankton’s competition theories for resources: the affinity-adapted species which were associated with larger size, higher nitrogen content and nitrate affinity; and the velocity-adapted species which were small size, efficient in maximum nitrate assimilation, specific carbon assimilation rate, and growth. Our work supports the relevance of a functional trait-based approach to describe Symbiodinaceae diversity. The two contrasting nitrogen acquisition strategies identified may be fundamental to explain the composition and dynamics of Symbiodinaceae in hospite, stressing the importance of bottom-up mechanisms in shaping symbiont composition.

Mature conifers assimilate nitrate as efficiently as ammonium from soils in four forest plantations.

Conifers are considered to prefer to take up ammonium (NH4+ ) over nitrate (NO3- ). However, this conclusion is mainly based on hydroponic experiments that separate roots from soils. It remains unclear to what extent mature conifers can use nitrate compared to ammonium under field conditions where both roots and soil microbes compete for nitrogen (N). We conducted an in situ whole mature tree nitrogen-15 (15 N) labeling experiment (15 NH4+ vs 15 NO3- ) over 15d to quantify ammonium and nitrate uptake and assimilation rates in four 40-yr-old monoculture coniferous plantations (Pinus koraiensis, Pinus sylvestris, Picea koraiensis and Larix olgensis, respectively). For the whole tree, 15 NO3- contributed 39% to 90% to total 15 N tracer uptake among four plantations during the study period. At day 3, the 15 NO3- accounted for 77%, 64%, 62% and 59% by Larix olgensis, Pinus koraiensis, Pinus sylvestris and Picea koraiensis, respectively. Our study indicates that mature coniferous trees assimilated nitrate as efficiently as ammonium from soils even at low soil nitrate concentration, in contrast to the results from hydroponic experiments showing that ammonium uptake dominated over nitrate. This implies that mature conifers can adapt to increasing availability of nitrate in soil, for example, under the context of globalization of N deposition and global warming.

Primary production and nitrogen assimilation rates from bay to offshore waters in the oyashio-kuroshio-Tsugaru Warm Current interfrontal region of the northwestern north Pacific Ocean

We examined primary production (PP) and the assimilation rates of nitrate (ρNO3-), ammonium (ρNH4+) and dinitrogen (ρN2) using 13C and 15N tracer techniques along bay to offshore transects in the Oyashio-Kuroshio-Tsugaru Warm Current interfrontal region in the northwestern North Pacific Ocean, during five research cruises covering a full seasonal cycle. Surface inorganic N was depleted in the bays and the offshore region from summer to fall, but the higher particulate organic carbon (POC)/particulate nitrogen (PN) ratio and higher maximum N assimilation rate observed kinetics experiments in the bays suggest that N limitation was stronger in bays than offshore. PP (295–19,200 nmol C L−1 d−1), ρNO3- (9.45–650 nmol N L−1 d−1) and ρNH4+ (11.6–494 nmol N L−1 d−1) in the surface waters were generally low in summer and high in spring. Different from the cases of ρNO3- and ρNH4+, ρN2 was high (up to 12 nmol N L−1 d−1) in mid-summer, especially in offshore regions, and moderate or low (≤2.26 nmol N L−1 d−1) during other seasons. N2 fixation largely contributed to total new production (up to 29%) in mid-summer. The mean f-ratio, estimated as the ratio of (ρNO3- + ρN2) to (ρNO3- + ρN2 + ρNH4+) at two offshore stations varied within the range of 0.29–0.83 (mean 0.54 ± 0.20). Comparison of the PP and total N assimilation (ρNO3- + ρN2 + ρNH4+) indicated that the ratio of C to N assimilation rates (max. 95) far exceeded the Redfield ratio (6.6). This finding suggests that other sources of N (e.g., dissolved organic nitrogen) contributed significantly to total N assimilation; if this is correct, the estimated f-ratio may be too high. Alternatively, the fC-ratio was estimated from the ratio of (ρNO3- + ρN2) to PP by assuming the Redfieldian assimilation ratio, and it ranged from 0.06 to 1.10 (mean 0.45 ± 0.31). Despite uncertainties in both the f- and fC-ratio estimation, our data provide evidence that a large fraction of PP is potentially available for export to deep waters and to higher trophic levels in the interfrontal region of the western North Pacific.

In Nitrate-Rich Soil, Fallopia x bohemica Modifies Functioning of N Cycle Compared to Native Monocultures

The effects of invasive species at the ecosystem level remain an important component required to assess their impacts. Here, we conducted an experimental study with labeled nitrogen in two types of soil (low and high nitrate conditions), investigating the effects of (1) the presence of Fallopia x bohemica on the traits of three native species (Humulus lupulus, Sambucus ebulus, and Urtica dioica) and (2) interspecific competition (monoculture of the invasive species, monoculture of the native species, and a mixture of invasive/native species) on nitrification, denitrification, and related microbial communities (i.e., functional gene abundances). We found that the species with the higher nitrate assimilation rate (U. dioica) was affected differently by the invasive species, with no effect or even an increase in aboveground biomass and number of leaves. F. x bohemica also decreased denitrification, but only in the soil with high nitrate concentrations. The impacts of the invasive species on nitrification and soil microorganisms depended on the native species and the soil type, suggesting that competition for nitrogen between plants and between plants and microorganisms is highly dependent on species traits and environmental conditions. This research highlights that studies looking at the impacts of invasive species on ecosystems should consider the plant–soil–microorganism complex as a whole.

Nitrate assimilation pathway in higher plants: critical role in nitrogen signalling and utilization

The process of nitrate assimilation is a very crucial pathway for the sustainable growth and productivity of higher plants. This process is catalysed by two enzymes, nitrate reductase and nitrite reductase. Both the enzymes differ from each other with respect to their structural organisation, subcellular location, catalytic efficiencies and regulatory mechanisms. Nitrate reductase catalyses the rate limiting step of nitrate assimilation process. The genes and proteins of this enzyme have been isolated and characterised from many higher plants. The additional role of NR in the production of nitric oxide has been also reported in last several years. The reduced ammonium is assimilated into carbon skeleton, ?-ketoglutarate, by the concerted action of glutamine synthetase and glutamate synthase. Glutamine and glutamate are the transportable forms of nitrogen among various tissues and metabolic processes. The rate of nitrate assimilation is regulated by the rate of uptake of nitrate by nitrate transporters, availability of carbon skeleton, accumulation of nitrogenous end products, light and the rate of photosynthesis. The partitioning of metabolites and resources between carbon and nitrogen metabolism is an important factor for the growth and yield of plants. During the last several decades excess use of nitrogen fertiliser has caused environmental pollution. Efforts have been made to increase the nitrogen use efficiency of plants to reduce the cost on fertiliser and nitrate pollution, increase the productivity and protein content of several commonly used crops. This review discusses the process of nitrate assimilation and its interaction with the carbon metabolism.

Nitrogen assimilation in picocyanobacteria inhabiting the oxygen‐deficient waters of the eastern tropical North and South Pacific

AbstractProchlorococcus and Synechococcus are the most abundant free‐living photosynthetic microorganisms in the ocean. Uncultivated lineages of these picocyanobacteria also thrive in the dimly illuminated upper part of oxygen‐deficient zones (ODZs), where an important portion of ocean nitrogen (N) loss takes place via denitrification and anaerobic ammonium oxidation. Recent metagenomic studies revealed that ODZ Prochlorococcus have the genetic potential for using different N forms, including nitrate and nitrite, uncommon N sources for Prochlorococcus, but common for Synechococcus. To determine which N sources ODZ picocyanobacteria are actually using in nature, the cellular 15N natural abundance (δ15N) and assimilation rates of different N compounds were determined using cell sorting by flow cytometry and mass spectrometry. The natural δ15N of the ODZ Prochlorococcus varied from −4.0‰ to 13.0‰ (n = 9), with 50% of the values in the range of −2.1–2.6‰. While the highest values suggest nitrate use, most observations indicate the use of nitrite, ammonium, or a mixture of N sources. Meanwhile, incubation experiments revealed potential assimilation rates of ammonium and urea in the same order of magnitude as that expected for total N in several environments including ODZs, whereas rates of nitrite and nitrate assimilation were very low. Our results thus indicate that reduced forms of N and nitrite are the dominant sources for ODZ picocyanobacteria, although nitrate might be important on some occasions. ODZ picocyanobacteria might thus represent potential competitors with anammox bacteria for ammonium and nitrite, with ammonia‐oxidizing archaea for ammonium, and with nitrite‐oxidizing bacteria for nitrite.

Channelizing Streams for Agricultural Drainage Impairs their Nutrient Removal Capacity.

In agricultural basins, fluvial ecosystems can work as filters when retaining the nutrient excess from agricultural activities, mitigating the impacts downstream. In frequently flooded areas, like the Pampas Region of Argentina, natural streams are being channelized to reduce flood frequency and intensity, thus increasing land suitability for crop production, but the impact of these interventions on nutrient removal capacity by streams is unknown. To evaluate the effects of channelizing streams on the assimilation rate of nitrate, ammonia, and phosphorus, nutrient addition experiments were performed in streams of the southern Pampas under three different conditions: (i) channelized reaches without (C.A. Mey.) Palla (reeds), (ii) unchannelized reaches without reeds, and (iii) unchannelized reaches with reeds. Assimilation rates were estimated by applying the one-dimensional transport with inflow and storage (OTIS) model, which considers the solute transport with lateral flow and storage. Nitrate and ammonia uptake rates were higher in unchannelized than in channelized stream reaches, and a higher nitrate assimilation rate was found in the presence of reeds, indicating an important role of this macrophyte in the nitrate uptake. In the case of phosphorous, uptake rates were higher in unchannelized reaches with reeds than in the channelized reaches. These results suggest that channelizing first-order streams in agricultural landscapes of the Argentine Pampas may significantly reduce the ability of streams to mitigate nutrients loss to continental and marine water sinks.

Nitrate and ammonium fluxes to diatoms and dinoflagellates at a single cell level in mixed field communities in the sea

Growth of large phytoplankton is considered to be diffusion limited at low nutrient concentrations, yet their constraints and contributions to carbon (C) and nitrogen fluxes in field plankton communities are poorly quantified under this condition. Using secondary ion mass spectrometry (SIMS), we quantified cell-specific assimilation rates of C, nitrate, and ammonium in summer communities of large phytoplankton when dissolved inorganic nitrogen concentrations are low in temperate coastal regions. Chain-forming diatoms composed 6% of total particulate organic carbon, but contributed 20% of C assimilation, 54% of nitrate assimilation and 32% of ammonium assimilation within the plankton community. In contrast, large dinoflagellates composed 11% of total POC, and contributed 14% of the C assimilation, 4% of ammonium and 9% of nitrate assimilation within the plankton community. Measured cell-specific C and nitrate assimilation rate match the Redfield ratio and the maximal nitrate assimilation in Chaetoceros spp. predicted by mass transfer theory. However, average ammonium assimilation rates were 30 and 340% higher than predicted by mass transfer theory in Tripos/Ceratium and Chaetoceros, respectively, suggesting that microbial interactions in the phycosphere may facilitate substantial luxury ammonium uptake by Chaetoceros in environments with fluctuating nitrate concentrations.

Increase in assimilatory nitrate reduction and photorespiration enhances CO2 assimilation under high light-induced photoinhibition in cotton

The mechanisms by which nitrate assimilation might favour photorespiration and how these pathways could cooperatively improve photosynthesis are still little understood, especially under excess light. Here, we tested the hypothesis that increased assimilatory nitrate reduction is able to stimulate photorespiration and these two processes together are capable to enhance photosynthesis in presence of high light. Cotton plants were supplied with 10 mM NO3− (high nitrate supply-HN) or NO3--deprivation for short-term and subsequently exposed to high light-HL or low light-LL. HL induced photoinhibition in both N-treatments but strongly enhanced nitrate assimilation and photorespiration rates in HN. Despite these apparent constraints caused by HL on PSII integrity, HN-plants displayed higher electron flux through PSII, in parallel to enhancement in CO2 assimilation, which was positively related to the photosynthetic nitrogen utilization efficiency. These plants also exhibited increase in nitrate reductase and glutamine synthetase activities, which were associated with large accumulation of free amino acids and ammonia, in parallel to high NO3- reduction rates. The increase in photorespiration was greatly dependent on light intensity and, in a minor extent, on nitrate supply. The changes in the alternative electron sink strength towards nitrate assimilation and photorespiration were corroborated by decrease in the acceptor side limitation of PSI. In addition, the correlation study evidenced that CO2 assimilation, nitrate reductase activity, and photorespiration rates were greatly correlated. Thus, our data clearly show that nitrate assimilatory reduction and photorespiration are mutually up regulated by high light, favoring CO2 assimilation and photochemical activity under a photoinhibitory condition.

Export flux of unprocessed atmospheric nitrate from temperate forested catchments: a possible new index for nitrogen saturation

Abstract. To clarify the biological processing of nitrate within temperate forested catchments using unprocessed atmospheric nitrate exported from each catchment as a tracer, we continuously monitored stream nitrate concentrations and stable isotopic compositions, including 17O excess (Δ17O), in three forested catchments in Japan (KJ, IJ1, and IJ2) for more than 2 years. The catchments showed varying flux-weighted average nitrate concentrations of 58.4, 24.4, and 17.1 µmol L−1 in KJ, IJ1, and IJ2, respectively, which correspond to varying export fluxes of nitrate: 76.4, 50.1, and 35.1 mmol m−2 in KJ, IJ1, and IJ2, respectively. In addition to stream nitrate, nitrate concentrations and stable isotopic compositions in soil water were determined for comparison in the most nitrate-enriched catchment (site KJ). While the 17O excess of nitrate in soil water showed significant seasonal variation, ranging from +0.1 ‰ to +5.7 ‰ in KJ, stream nitrate showed small variation, from +0.8 ‰ to +2.0 ‰ in KJ, +0.7 ‰ to +2.8 ‰ in IJ1, and +0.4 ‰ to +2.2 ‰ in IJ2. We conclude that the major source of stream nitrate in each forested catchment is groundwater nitrate. Additionally, the significant seasonal variation found in soil nitrate is buffered by the groundwater nitrate. The estimated annual export flux of unprocessed atmospheric nitrate accounted for 9.4 %±2.6 %, 6.5 %±1.8 %, and 2.6 %±0.6 % of the annual deposition flux of atmospheric nitrate in KJ, IJ1, and IJ2, respectively. The export flux of unprocessed atmospheric nitrate relative to the deposition flux showed a clear normal correlation with the flux-weighted average concentration of stream nitrate, indicating that reductions in the biological assimilation rates of nitrate in forested soils, rather than increased nitrification rates, are likely responsible for the elevated stream nitrate concentration, probably as a result of nitrogen saturation. The export flux of unprocessed atmospheric nitrate relative to the deposition flux in each forest ecosystem is applicable as an index for nitrogen saturation.

Divergent gene expression among phytoplankton taxa in response to upwelling.

Frequent blooms of phytoplankton occur in coastal upwelling zones creating hotspots of biological productivity in the ocean. As cold, nutrient-rich water is brought up to sunlit layers from depth, phytoplankton are also transported upwards to seed surface blooms that are often dominated by diatoms. The physiological response of phytoplankton to this process, commonly referred to as shift-up, is characterized by increases in nitrate assimilation and rapid growth rates. To examine the molecular underpinnings behind this phenomenon, metatranscriptomics was applied to a simulated upwelling experiment using natural phytoplankton communities from the California Upwelling Zone. An increase in diatom growth following 5 days of incubation was attributed to the genera Chaetoceros and Pseudo-nitzschia. Here, we show that certain bloom-forming diatoms exhibit a distinct transcriptional response that coordinates shift-up where diatoms exhibited the greatest transcriptional change following upwelling; however, comparison of co-expressed genes exposed overrepresentation of distinct sets within each of the dominant phytoplankton groups. The analysis revealed that diatoms frontload genes involved in nitrogen assimilation likely in order to outcompete other groups for available nitrogen during upwelling events. We speculate that the evolutionary success of diatoms may be due, in part, to this proactive response to frequently encountered changes in their environment.

Gamma-Aminobutyric Acid (GABA) Modulates Nitrate Concentrations and Metabolism in the Leaves of Pakchoi (Brassica campestris ssp. chinensis Makino) Treated with a Nitrogen-Rich Solution

Pakchoi plants were grown in 32 mM NO3− nutrient solution with or without 2.5 mM γ-aminobutyric acid (GABA) to investigate metabolite changes, gene and protein expression levels, and the activities of key enzymes related to nitrate metabolism in the leaves over a period of 0–12 days. High-nitrogen treatment enhanced plant growth and the NO3−, NO2−, NH4+, Gln, and Glu contents in the leaves; promoted the gene and protein expression of nitrate reductase (NR) and glutamate decarboxylase (GAD); and increased the activities of NR, nitrite reductase (NiR), glutamine synthetase (GS), glutamate synthase (GOGAT), and GAD. The endogenous GABA concentration in the leaves was enhanced in parallel with the increase in GAD activity. The GABA-treated leaves displayed the greatest increases in the gene and protein expression levels of NR and GAD and in the activities of NR, NiR, GS, GOGAT, and GAD. In addition, accelerated rates of nitrate reduction and assimilation were detected, and these changes occurred concurrently with the observed increases in gene or protein expression and enzyme activity. As a result, the concentrations of NH4+, Gln, Glu, and endogenous GABA were significantly elevated, and the NO3− and NO2− contents were significantly decreased, in GABA-treated leaves compared with plants exposed to nitrogen-rich conditions. Our results reveal a potential positive that GABA may act as a nitrogen source to improve the plant growth and the most prominent effect of decreasing nitrate contents by accelerating NO3− reduction and assimilation. Exogenous GABA plays an important role in reducing the NO3− content of leaves, and thereby improves the ability to harvest leafy vegetables containing higher levels of endogenous GABA.

Diazotroph community structure and the role of nitrogen fixation in the nitrogen cycle in the Chukchi Sea (western Arctic Ocean)

AbstractMarine nitrogen fixation occurs not only in subtropical and tropical regions but also in colder regions. However, the distribution of diazotrophs, nitrogen fixation rate, and its contribution to the nitrogen cycle in the Arctic Ocean remain poorly understood. We examined the diazotroph community structure and activity in the shelf and off‐shelf regions of the Chukchi Sea, western Arctic Ocean, during late summer 2015. The nitrate and ammonium assimilation rates were determined simultaneously to gain insights into the role of nitrogen fixation in the nitrogen cycle of the region. The diazotroph community determined by Illumina sequencing was mainly composed of Cluster III nifH phylotypes (putative anaerobes), accounting for > 80% of the total sequences examined, except for one surface sample. This result is strikingly different from previous findings in other oceanic regions. The nifH sequences other than those from Cluster III were mostly affiliated with UCYN‐A2 (symbiotic cyanobacteria), which accounted for < 15% of the total sequences. UCYN‐A2 tended to be abundant (maximum 2.9 × 103 copies L−1) in the high‐temperature low‐salinity water mass that is characteristic of Pacific‐originating water. Nitrogen fixation rate was detectable at most stations, with a range of 0.08–3.60 nmol L−1 d−1, displaying no clear relationship with depth (light intensity) or nitrate or ammonium concentration. Nitrogen fixation locally exceeded nitrate assimilation, but accounted for 1.00% at most in the total nitrogen assimilation in the euphotic zone.

Rates of nitrification and nitrate assimilation in the Changjiang River estuary and adjacent waters based on the nitrogen isotope dilution method

Being supplied from both terrestrial inputs and internal regeneration, nitrate is usually in excess in the Changjiang River estuary (CRE) and adjacent waters (CREAW). As significant reactions in the nitrogen cycle, nitrate assimilation and nitrification rates were calculated by field incubation experiments following the isotope dilution method during June and November 2014. Besides this, distribution of other field parameters in the CREAW were also investigated. The results showed that the nitrate assimilation rates were higher in nearshore areas and lower in offshore areas. The nitrate assimilation rates were also higher during June, at 0.3–11.9 μmol L−1 d−1, whereas the rates were 0–3.2 μmol L−1 d−1 in November. The highest rate was observed in the surface water of the estuary, where the chlorophyll-a (chl-a) concentration reached 11.02 μg L−1. In addition, the phytoplankton community structure affected the nitrate assimilation rates, and dinoflagellates presented weaker nitrate assimilation abilities than those of diatoms. By contrast, the nitrification rates were higher in nearshore areas in June but higher in offshore areas in November. The nitrification rates were 0–4.1 μmol L−1 d−1 and 0–3.6 μmol L−1 d−1 in June and November, respectively. At most sites, the nitrification rates were positively correlated with the ammonium concentrations and were higher in November, which might be attributable to the higher temperature. Moreover, a theoretical calculation was used to study the regional nitrate flux throughout the vertical water column. The results showed that a gradual supplement from nitrification might replenish the nitrate consumed by assimilation far from the CRE. The overall result was that terrestrial input remained the primary source of estuarine nitrate; however, the role of internal nitrate regeneration, which would be effective for primary production in the CREAW, should also be highlighted as a source of nitrate, especially in offshore areas.

Nitrification and its influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean.

We examined nitrification in the euphotic zone, its impact on the nitrogen cycles, and the controlling factors along a 7500 km transect from the equatorial Pacific Ocean to the Arctic Ocean. Ammonia oxidation occurred in the euphotic zone at most of the stations. The gene and transcript abundances for ammonia oxidation indicated that the shallow clade archaea were the major ammonia oxidizers throughout the study regions. Ammonia oxidation accounted for up to 87.4% (average 55.6%) of the rate of nitrate assimilation in the subtropical oligotrophic region. However, in the shallow Bering and Chukchi sea shelves (bottom ⩽67 m), the percentage was small (0–4.74%) because ammonia oxidation and the abundance of ammonia oxidizers were low, the light environment being one possible explanation for the low activity. With the exception of the shallow bottom stations, depth-integrated ammonia oxidation was positively correlated with depth-integrated primary production. Ammonia oxidation was low in the high-nutrient low-chlorophyll subarctic region and high in the Bering Sea Green Belt, and primary production in both was influenced by micronutrient supply. An ammonium kinetics experiment demonstrated that ammonia oxidation did not increase significantly with the addition of 31–1560 nm ammonium at most stations except in the Bering Sea Green Belt. Thus, the relationship between ammonia oxidation and primary production does not simply indicate that ammonia oxidation increased with ammonium supply through decomposition of organic matter produced by primary production but that ammonia oxidation might also be controlled by micronutrient availability as with primary production.