Niche Space Research Articles

Climate and Land‐Use Change Leading to Niche Expansion and Shifts in Birds

ABSTRACTAimThe realised niches of species change following environmental and distributional shifts. Still, the magnitude of niche change and its consequences are determined by how different species cope with environmental changes, which ultimately depends on their ecology and traits. We assessed how environmental and distributional shifts have led to changes in the realised breeding niches of 121 species of North American birds over the last four decades and how the magnitude of niche change was associated with species traits.LocationNorth America.TaxonBirds.MethodsWe calculated geographic and niche overlap, breadth and shift, and estimated the temporal trends of the different niche metrics from 1980 to 2018 for each species. The slopes of these temporal trends were then modelled as a function of species traits using Bayesian models that accounted for phylogenetic relatedness and the uncertainty of the temporal slopes.ResultsWe found that the niche of 57% of the bird species diverged through time as they experienced widespread environmental change, including changes in both niche breadth and position. Most niches expanded due to increasing environmental variability within their ranges, but habitat specialists showed a tendency for niche contraction. Niche shifts were larger in species that live in habitats with denser vegetation cover. However, species showing larger average geographical shifts were able to track their reference niche more effectively.Main ConclusionsBird species were in general increasingly exposed to higher environmental variation that led to changes in their realised niches over a relatively short time span (four decades), while the niches of many others remained stable. The differences in the magnitude of niche change were to some extent related to species traits, providing clues about how different species respond to widespread environmental change in both geographical and niche space.

Stable isotopes disentangle niche partitioning and co‐occurrence in a multi‐species marine mutualism

Ecologists have long sought general explanations for the co‐occurrence of ecologically similar taxa. Niche theory explains co‐occurrence via functional differences among taxa that reduce competition and promote resource partitioning. Alternatively, the unified neutral theory of biodiversity and biogeography suggests that co‐occurrence can be attributed to stochastic processes, and thus, presupposes that ecologically similar species that occur in sympatry are functionally analogous. We test these hypotheses using the most diverse crustacean‐sea anemone symbiosis from coral reefs in the Tropical Western Atlantic. δ13C and δ15N stable isotope analyses of six crustacean symbionts that co‐occur around the host anemone Bartholomea annulata exhibit highly differentiated isotopic niche space spanning several trophic levels. As multiple crustacean species within the symbiosis have been documented as cleaners that remove parasites from reef fishes, we extended our investigation into the broader cleaner community. Our stable isotope analyses of cleaners shows that Pederson's cleaner shrimp Ancylomenes pedersoni exhibits the highest δ15N isotopic values‐ significantly higher than all other putative cleaner species and consistent with expectations of a dedicated cleaning lifestyle. However, for other species previously described or observed to clean reef fishes, including Periclimenes yucatanicus, Stenopus hispidus and Stenorhynchus seticornis, δ15N isotopic values were substantially lower, raising questions about the degree to which these species rely on cleaning interactions to meet their nutritional requirements. Taken together, our data are consistent with the expectations of niche theory: co‐occurring symbiotic crustaceans have highly partitioned niche space with low levels of functional redundancy.

Community-level trophic characteristics and interactions between native and non-native fish: The example of the Lower Pearl River Basin of China

Aquatic ecosystems can harbour more than one non-native fish species and this can represent a threat due to trophic interactions with native fishes. However, research on interactions amongst multiple co-occurring native and non-native fish remains scarce. In this study, 551 organisms from 44 native fish, 11 non-native fish, 35 macroinvertebrates (of which one was non-native), together with 162 samples of basal resources were collected from six rivers of the Lower Pearl River Basin of China. Nitrogen and carbon stable isotope analysis was used to calculate community-wide trophic metrics and the degree of trophic overlap between native and non-native fish at both the community and functional feeding group level, together with diet composition. At the community level, there was a high degree of trophic niche overlap between native and non-native fish as a result of similarities in trophic characteristics. At the functional feeding group level, both native and non-native functional feeding groups demonstrated the capacity to occupy the niche space of each other. A significant trophic niche overlap, exceeding 50%, was found between non-native detritivorous and omnivorous fish, suggesting competition. The difference in diet composition between some native and non-native fish depended on the category of diet source across the rivers, suggesting dietary segregation. Albeit limited, the present findings suggest that trophic interaction between native and non-native fish is likely to reach a dynamic equilibrium status in the community owing to trophic segregation of fish species and the antagonistic effects amongst non-native fish.

Dietary partitioning of fishers and martens in a rapidly changing landscape

Niche partitioning is critical for the stable coexistence of competing species that share limited resources. Yet, niches are dynamic, especially in the face of rapid environmental change. Carnivores exhibit particularly strong forms of competition and are differentially affected by change. Fishers (Pekania pennanti) and martens (Martes caurina) are two species of carnivores that overlap in space, time, and resources. In the Sierra Nevada of California, these two species share habitats that are undergoing a sudden restructuring due to drought and the subsequent mortality of more than half of all trees. Using a long-term dataset from across the affected region of the Sierra Nevada, we quantified the diet, as well as dietary niche overlap and niche shift of fishers and martens during summer months before, during, and after these disturbances and as a function of spatial overlap. The summer diet of fishers and martens did not appear to be affected by change in live forest canopy and tree mortality. While fisher diet was unaffected by elevation, martens exhibited an increasing reliance on vertebrate prey at higher elevations. Our results suggest that during summer months the diet of fishers is highly diverse, even including fungi and insects, but the diet of martens is less diverse and more reliant on vertebrate prey. These different consumption patterns — which were largely unaffected by changing environmental conditions, except elevation — have led to unexpectedly low overlap in trophic niche space during the timeframe measured. Our findings demonstrate that the coexistence of martens and fishers regionally is likely facilitated, in part, through partitioning along the trophic niche axis. If drought conditions persist and lead to continued or increasingly reduced snowpack and altered vegetation, future research should assess how niche partitioning of fishers, martens, and other members of the broader carnivore community will endure.

Phage biocontrol success of bacterial wilt depends on synergistic interactions with resident rhizosphere microbiota.

Phages can successfully be used invitro and in planta to biocontrol the phytopathogenic Ralstonia solanacearum bacterium-the causal agent of bacterial wilt disease. However, phage biocontrol outcomes are still variable, and it is unclear what causes this. In this study, we assessed the efficiency of four phages in controlled invitro and in planta experiments in all one- and two-phage combinations. We found that using phages in combination did not improve the phage biocontrol efficiency relative to single phage treatments, while certain phages and their combinations were more effective than the others. High intra-treatment variability in phage efficiency was observed across all phage treatments, which was associated with clear shifts in microbiome composition, a reduction in R. solanacearum and an increase in phage densities. We further identified the bacterial taxa that were associated with these 'shifted' microbiomes and conducted additional plant growth experiments, demonstrating that some of the enriched bacterial species could protect plants from R. solanacearum infections-a pattern which was also observed using partial least squares path modelling (PLS-PM). Together, these results suggest that phages could open niche space for beneficial bacteria by reducing pathogen densities and that variability in phage biocontrol outcomes is rhizosphere microbiome-dependent, which can introduce between-replicate variation, even in controlled greenhouse conditions.

Bacterial community dynamics as a result of growth-yield trade-off and multispecies metabolic interactions toward understanding the gut biofilm niche

Bacterial communities are ubiquitous, found in natural ecosystems, such as soil, and within living organisms, like the human microbiome. The dynamics of these communities in diverse environments depend on factors such as spatial features of the microbial niche, biochemical kinetics, and interactions among bacteria. Moreover, in many systems, bacterial communities are influenced by multiple physical mechanisms, such as mass transport and detachment forces. One example is gut mucosal communities, where dense, closely packed communities develop under the concurrent influence of nutrient transport from the lumen and fluid-mediated detachment of bacteria. In this study, we model a mucosal niche through a coupled agent-based and finite-volume modeling approach. This methodology enables us to model bacterial interactions affected by nutrient release from various sources while adjusting individual bacterial kinetics. We explored how the dispersion and abundance of bacteria are influenced by biochemical kinetics in different types of metabolic interactions, with a particular focus on the trade-off between growth rate and yield. Our findings demonstrate that in competitive scenarios, higher growth rates result in a larger share of the niche space. In contrast, growth yield plays a critical role in neutralism, commensalism, and mutualism interactions. When bacteria are introduced sequentially, they cause distinct spatiotemporal effects, such as deeper niche colonization in commensalism and mutualism scenarios driven by species intermixing effects, which are enhanced by high growth yields. Moreover, sub-ecosystem interactions dictate the dynamics of three-species communities, sometimes yielding unexpected outcomes. Competitive, fast-growing bacteria demonstrate robust colonization abilities, yet they face challenges in displacing established mutualistic systems. Bacteria that develop a cooperative relationship with existing species typically obtain niche residence, regardless of their growth rates, although higher growth yields significantly enhance their abundance. Our results underscore the importance of bacterial niche dynamics in shaping community properties and succession, highlighting a new approach to manipulating microbial systems.

Polyploidy linked with species richness but not diversification rates or niche breadth in Australian Pomaderreae (Rhamnaceae).

Polyploidy is an important evolutionary driver for plants and has been linked with higher species richness and increases in diversification rate. These correlations of ploidy with plant radiations could be the result of polyploid lineages exploiting greater niche space and novel niches due to their enhanced adaptability. Ploidy evolution and how it links with diversification of plants across the Australian continent is not well understood. Here, we focused on the ploidy evolution of the Australasian Rhamnaceae tribe Pomaderreae. We generated a densely-sampled phylogeny (90%, 215/240 spp.) of the tribe and used it to test for the evolution of ploidy. We obtained 30 orthologous nuclear loci per sample and dated the phylogeny using TreePL. Ploidy estimates for each sequenced species was obtained using nQuire, based on phased sequence data. We used MiSSE to obtain tip diversification rates and tested for significant relationships between diversification rates and ploidy. We also assessed for relationships between ploidy level and niche breadth, using distributional records, species distributional modelling, and WorldClim data. Polyploidy is extensive across the tribe, with almost half (45%) of species and majority of genera exhibiting this trait. We found a significant positive relationship between polyploidy and genus size (i.e., species richness), but non-significant positive relationship between polyploidy and diversification rates. Polyploidy did not result in significantly wider niche space occupancy for Pomaderreae, however polyploidy did allow for transitions into novel wetter niches. Spatially, eastern Australia is the diversification hotspot for Pomaderreae in contrast to the species hotspot of southwest Western Australia. The relationship between polyploidy and diversification is complex. Ancient polyploidisation events likely played an important role in the diversification of species rich genera. A lag time effect may explain the uncoupling of tip diversification rates and polyploidy of extant lineages. Further studies on other groups are required to validate these hypotheses.

Rapid shifts in grassland communities driven by climate change.

Many terrestrial plant communities, especially forests, have been shown to lag in response to rapid climate change. Grassland communities may respond more quickly to novel climates, as they consist mostly of short-lived species, which are directly exposed to macroclimate change. Here we report the rapid response of grassland communities to climate change in the California Floristic Province. We estimated 349 vascular plant species' climatic niches from 829,337 occurrence records, compiled 15 long-term community composition datasets from 12 observational studies and 3 global change experiments, and analysed community compositional shifts in the climate niche space. We show that communities experienced significant shifts towards species associated with warmer and drier locations at rates of 0.0216 ± 0.00592 °C yr-1 (mean ± s.e.) and -3.04 ± 0.742 mm yr-1, and these changes occurred at a pace similar to that of climate warming and drying. These directional shifts were consistent across observations and experiments. Our findings contrast with the lagged responses observed in communities dominated by long-lived plants and suggest greater biodiversity changes than expected in the near future.

Evolutionary origins, macroevolutionary dynamics, and climatic niche space of the succulent plant syndrome in the Caryophyllales.

The succulent plant syndrome is defined by the coordination of traits that enhance internal water storage within plant tissues. Although distributed globally in different habitats, succulent plants are thought to have evolved to avoid drought in arid regions, due to trait modifications that decrease tissue water deficits. We evaluated the evolution and the ecological significance of the succulent strategy at a global scale by comparing the climatic niche of species displaying succulence within the Core Caryophyllales with their non-succulent relatives. We assembled and curated a worldwide dataset of 201K georeferenced records belonging to 5447 species within 28 families, and analyzed the climatic niche of species along with their origin and evolutionary trajectories using ecological niche modeling, phylogenetic regression, divergence dates and ancestral state estimation. Results indicate the Core Caryophyllales have inhabited drylands since their origin in the Early Cretaceous. However, the succulent syndrome appeared and diversified during later geologic periods. The climatic niche space of succulents is narrower than non-succulent relatives, but no climate niche separation was detected between groups. Our results support alternative interpretations on the environmental and ecological forces that spurred the origin and diversification of the succulent plant syndrome and the radiation of rich succulent lineages.

Niche filling predicts evolutionary trajectories in insular bird communities

Abstract Different theories have been proposed to explain the phenotypic changes observed in island lineages, but it remains unclear if predictable evolutionary trajectories can be identified within island communities. Using a 3D functional space approach, we tested whether insular endemic species tend to evolve towards apparent holes in niche space (expecting niche filling) or tend to become generalists, that is, moving towards the centre of the functional space (expecting niche expansion). We tested these two hypotheses in 378 insular endemic species from 24 islands of 8 archipelagos, including 177 prehistoric anthropogenically extinct species. Analyses were conducted with and without accounting for species size difference. We found that 57% of island endemic species evolved towards more unoccupied regions of the global morphospace (i.e. more distinct body sizes compared to the ones of their ancestors), suggesting a tendency for niche filling. When adjusted traits for body size, we found that half of the endemic species (50%) showed more distinct trait values than their ancestors. Results also revealed that certain dietary niches (terrestrial herbivores and nectarivores) evolved distinct body sizes more frequently. Differences noted between islands and archipelagos suggest that biogeographic factors may influence evolutionary trajectory and interactions between these two hypotheses. Our study confirms that extinct species occupied specific niches that have been left vacant, suggesting that these evolutionary ‘oddities’ could be more sensitive to extinction. Overall, it calls for a global assessment of the avian functional diversity lost from recent extinctions. Read the free Plain Language Summary for this article on the Journal blog.

The effects of climate and population on human land use patterns in Europe from 22ka to 9ka ago

Between 22ka and 9ka ago, after the Last Glacial Maximum (LGM) and during the transition to the Holocene, mobile hunter-gatherer populations, differentiated by their stone tool assemblages, periodically dispersed and contracted across Europe. It is well understood that climate played an important role in human distributions and population sizes during the post-LGM Late Pleistocene and Early Holocene, but the question remains as to whether increasing population sizes drove early human dispersal. Here, using a spatiotemporal species distribution model to infer the fundamental and potential human climatic niche space of Late Upper Paleolithic, Final Paleolithic and Early Mesolithic Europe, and hypotheses derived from the Ideal Distribution Model, we test i) how changes in climate affected the size and extent of the projected potential human niche space, ii) for effects of changes in size of projected potential niche on regional human population sizes, iii) whether increasing human population sizes drove human dispersal into less climatically suitable habitats, and iv) whether populations associated with different high-order material culture groupings (macro-level technocomplexes) occupied different climatic spaces. We find that changes in climate correlate strongly with the size and extent of the projected potential human niche space, that increases in the projected human niche space correlate with increases in human population, that human population size is just beginning to become large enough to influence land use and dispersal patterns at the Pleistocene-Holocene transition, and that archaeological technocultural entities overlap in their fundamental climatic niche space. This overlap implies that changing tools forms cannot readily been seen as reflecting adaptations to changing climates.

Historical biogeography and the evolution of habitat preference in the North American camel spider family, Eremobatidae (Arachnida:Solifugae)

Abiotic variables can influence species distributions, often restricting taxa to an acquired climatic signature or conversely, related species are conserved in the same ecological space over millions of years. An investigation into how abiotic change has shaped geographic distributions of taxa may be key to understanding diversification of lineages, and in the absence of reliable morphological characteristics, such information may support taxonomic units at multiple scales.Here, we examine the historical biogeography and patterns of habitat preference within the North American solifuge family, Eremobatidae. A previous study demonstrated that a major taxonomic revision of Eremobatidae is warranted, however recent studies demonstrate high levels of morphological convergence within the group, thus a re-classification of generic boundaries using additional information must be prioritized before we can formally begin solid revisionary efforts. In this study, we aimed to reconstruct a well-resolved phylogenetic hypothesis of Eremobatidae by filtering UCE loci based on informativeness, by mitigating the effect of cogenic UCE on phylogenetic estimation, and by supplementing our curated UCE loci with mitochondrial information. Using our preferred topology, in conjunction with published estimated divergence dates for Eremobatidae, we inferred a time-calibrated phylogenetic hypothesis to inform the historical biogeography and patterns of habitat preference. The two major habitat types that were observed for Eremobatidae were warm deserts for early diverging taxa and a subsequent evolution to cold deserts and Mediterranean California ecoregions for later diverging taxa. Eremobatid niche space, determined by temperature and precipitation, has been conserved for at least 25 million years in North America, supporting a warm desert origin, and thus supporting high species richness in the Sonoran and Mexican Plateau. Overall, our study provides support for new generic level designations within Eremobatidae.

Seasonal habitat use and diel vertical migration in female spurdog in Nordic waters

BackgroundStudying habitat use and vertical movement patterns of individual fish over continuous time and space is innately challenging and has therefore largely remained elusive for a wide range of species. Amongst sharks, this applies particularly to smaller-bodied and less wide-ranging species such as the spurdog (Squalus acanthias Linnaeus, 1758), which, despite its importance for fisheries, has received limited attention in biologging and biotelemetry studies, particularly in the North-East Atlantic.MethodsTo investigate seasonal variations in fine-scale niche use and vertical movement patterns in female spurdog, we used archival data from 19 pregnant individuals that were satellite-tagged for up to 365 days in Norwegian fjords. We estimated the realised niche space with kernel densities and performed continuous wavelet analyses to identify dominant periods in vertical movement. Triaxial acceleration data were used to identify burst events and infer activity patterns.ResultsPregnant females frequently utilised shallow depths down to 300 m at temperatures between 8 and 14 °C. Oscillatory vertical moments revealed persistent diel vertical migration (DVM) patterns, with descents at dawn and ascents at dusk. This strict normal DVM behaviour dominated in winter and spring and was associated with higher levels of activity bursts, while in summer and autumn sharks predominantly selected warm waters above the thermocline with only sporadic dive and bursts events.ConclusionsThe prevalence of normal DVM behaviour in winter months linked with elevated likely foraging-related activity bursts suggests this movement behaviour to be foraging-driven. With lower number of fast starts exhibited in warm waters during the summer and autumn months, habitat use in this season might be rather driven by behavioural thermoregulation, yet other factors may also play a role. Individual and cohort-related variations indicate a complex interplay of movement behaviour and habitat use with the abiotic and biotic environment. Together with ongoing work investigating fine-scale horizontal movement as well as sex- and age-specific differences, this study provides vital information to direct the spatio-temporal distribution of a newly reopened fishery and contributes to an elevated understanding of the movement ecology of spurdog in the North-East Atlantic and beyond.Graphical

Differential use of nest materials and niche space among avian species within a single ecological community.

Differential use of resources among bird species has been examined extensively in diet and nesting sites, but few studies have assessed this regarding avian nest materials. We assessed the structure and composition of nests in a group of co-existing passerine shrubland birds at a site in Massachusetts, USA. We found, measured, collected, and dissected nests, and then weighed nest materials in morphological groups (e.g., bark, twigs, feathers) to determine if our seven focal species were using different nest materials. Among species, we compared proportional material masses in complete nests, and also separately in the exterior, structural part of the nest and the interior, cup lining. We found that the proportional masses of all 17 material types that we examined in nests differed among species. The compositions of nests among all seven bird species were distinct in multivariate ordination space and only a few pairs of species had substantial niche overlap. Proportional masses of materials within discrete sections (exterior and interior) also varied among species. Although some differences in nest composition could be partially explained by bird species size, nest materials differed even within the three larger bodied species and within four smaller bodied species. Our study builds upon previous studies that have shown species-specificity in avian nest composition and supports the notion that birds using the same environment have distinct niches in relation to the materials placed in their nests. Niche partitioning due to interspecific competition could partially explain our findings, as certain materials are limited as resources, and searching for suitable nest materials is energetically costly. Additionally, other factors, such as partitioned nest sites, may have led to differential nest material use. We recommend further research to help elucidate underlying mechanisms of nest composition partitioning in birds and potentially other nest-building taxa.

Is it all about size? Dismantling the integrated phenotype to understand species coexistence and niche segregation

Abstract Niche segregation is a mechanism by which competition between coexisting species is reduced. The ecological niche is a multidimensional space shaped by the conditions and resources that enable the existence of species. We conducted comprehensive univariate and multidimensional analyses of phenotypic traits encompassing morphology, functional performance and ecophysiology, to investigate which phenotypic traits contribute to niche segregation and overlap in two coexisting green lizard species. Our analyses revealed that the main driver of niche segregation was body size. However, when considering size‐corrected phenotypic spaces, ecophysiological traits were still distinct, with little overlap between co‐occurring species. Such differentiation was linked mainly to preferred temperature variance and water loss, highlighting the importance of thermal and hydric niche segregation. Some particular traits such as limb length also contributed to niche segregation being maintained in the morphological space, even when the effect of size was accounted for. Instead, the phenotypic space of functional performance traits (i.e. bite force, locomotor performance) showed the greatest overlap between the two species, thus, less niche segregation was observed, once size effects were removed. Therefore, functional performance traits contribute in a minor proportion to the effective niche segregation between the two species. In light of our results, the most adequate perspective to understand niche segregation in coexisting species is through a multidimensional approach in differentiated phenotypic spaces. Our dismantling of phenotypic traits allowed us to identify niche areas in which trait overlap occurs and others that promote niche segregation, considering or not size effects. Our results suggest that differential use of structural and functional niche space promotes effective niche segregation, potentially reducing direct competition between species. We highlight the importance of studies that include the combination of several phenotypic traits that, as a whole, provide insights to better understand the mechanisms by which coexisting organisms exploit differentiated resources in multidimensional spaces. Read the free Plain Language Summary for this article on the Journal blog.

Environmental influence on the functional ecological structure of benthic macrofaunal communities of the northwest Iberian coast

Evaluating the functional structure of benthic macrofaunal communities provides insights into how environmental drivers shape the ecosystem and establishes a baseline knowledge of the communities’ dynamics and functioning. This understanding allows the prediction of responses to environmental changes and the implementation of efficient conservation and management strategies. Here we examine the structures and functions of benthic macrofaunal communities on the Northwest Iberian coast concerning environmental factors such as depth, hydrodynamic energy, and bottom type. The results suggest that the community assemblages and their function are structured by factors which influence food availability and habitat heterogeneity. The different sites exhibited different trait compositions and functional structures, indicating that distinct functions are performed according to environmental conditions. The communities found in sandy bottom areas with low hydrodynamic conditions presented frail functionality and demonstrated high vulnerability to alterations in their environment. Conversely, the communities found in rocky bottoms with high hydrodynamic conditions exhibited a fulfilled functional niche space, rendering them more resilient to such changes and less prone to loss of function. Although the analyses did not reveal significant differences in the factor depth, its influence on several factors seems relevant in shaping the functional structure of the communities. These findings highlight the importance of understanding the impact of local environmental conditions on ecosystem functioning, to effectively implement monitoring, management, and conservation strategies.

Isotopes Complement Morphology: Niche Partitioning Among Greenbuls in the Afrotropical Lowland Forest

ABSTRACTBiodiversity plays a vital role in ecosystem functioning, so understanding how species coexist is a cornerstone of ecology. However, despite decades of research, our current knowledge is incomplete due to methodological limitations and sampling bias, particularly in the species‐rich tropics. In this study, we combined bill and body morphological traits with stable isotopes in feathers to quantify niche differentiation among six co‐occurring greenbul taxa, a diverse group of frugivorous and insectivorous passerines with remarkable similarities in body shape, in the lowland rainforests of Mount Cameroon, West‐Central Africa. Our results showed that the greenbul's niche space was primarily differentiated by variations in body morphology, with yellow‐lored bristlebill Bleda notatus and eastern bearded greenbul Criniger chloronotus occupying ecological niches distinct from the remaining four taxa, while bill morphology indicated substantial overlap between the taxa. In addition, isotopic composition of the feathers revealed a separation of western greenbul Arizelocichla tephrolaema from the other taxa. Our results show that the integration of morphological and isotopic data can provide robust estimates of niche overlaps, providing evidence for the differentiation of ecological roles. This highlights the importance of integrating variable traits to improve our understanding of how animals exploit the multidimensional niche space that enables their coexistence.

Global analysis of soil bacterial genera and diversity in response to pH

Soil pH stands as a decisive factor in shaping bacterial diversity and community composition, yet predicting the pH preferences and traits of individual bacterial taxa is still incomplete. We surveyed 942 samples from seven biomes worldwide to unravel the responses of individual bacterial genus to soil pH. Our findings indicate that soil pH surpasses the influences of spatial and climatic factors (biomes) in affecting bacterial composition and diversity. We observed that a comparable proportion of genera had low pH optima (21%), high pH optima (18%), and neutral pH optima (18%). However, apart from genera with optima groups, only a small percentage of genera were low pH tolerant (0.8%) compared to those that were high pH tolerant (21%). This suggests that a greater number of non-extremophiles genera can tolerate alkaline conditions compared to acidic conditions. Bacterial richness forms unimodal relationship with soil pH, consistently increasing from acidic levels to neutral across all biomes. However, the decline in richness when pH rises beyond neutral was less pronounced. This can be attributed to the higher number of alkaline-tolerant genera compared to acidic-tolerant genera. As expected, genera with acidic optima are more prevalent in humid climates, such as tropical forests, arctic tundra, and boreal forests, whereas genera with alkaline optima are generally dominant in arid grasslands and drylands. Collectively, our results indicate that the probability of existence of at least 75% of genera in specific soil pH conditions can be predicted, irrespective of biome. The identification of the actual niche spaces occupied by individual soil bacterial genera forms the foundation for developing comprehensive hypotheses regarding the response of soil communities to changing soil conditions worldwide.

Household niche experimentation in sustainability transitions and everyday life: A novel framework with evidence from low-waste living in Melbourne

Sustainability transitions research and policy treat households and the home in a narrow way. The paper reviews niche-based experimentation and social-practice theory informed sustainability transitions literature to develop a novel framework for deliberate household experimentation. The usefulness of the framework is explored in an action research project on low-waste living in Melbourne. Data was collected through interviews, weekly self-reports and three participatory workshops. The research confirms the usefulness of the framework and offers reflections on deliberate household experimentation. The conclusion is that similar to other niche spaces, household niches are instrumental in demonstrating, learning about, advocating for and critiquing different aspects of sustainability transitions. But in contrast to other niche spaces, households are deeply embedded in the everyday life of what matters to people. If the transition to low-waste living is to be successful, it needs to be planned from the perspective of everyday household life.

Can niche plasticity mediate species persistence under ocean acidification?

Global change stressors can modify ecological niches of species, thereby altering ecological interactions within communities and food webs. Yet, some species might take advantage of a fast-changing environment, allowing species with high niche plasticity to thrive under climate change. We used natural CO2 vents to test the effects of ocean acidification on niche modifications of a temperate rocky reef fish assemblage. We quantified three ecological niche traits (overlap, shift and breadth) across three key niche dimensions (trophic, habitat and behavioural). Only one species increased its niche width along multiple niche dimensions (trophic and behavioural), shifted its niche in the remaining (habitat) was the only species to experience a highly increased density (i.e. doubling) at vents. The other three species that showed slightly increased or declining densities at vents only displayed a niche width increase in one (habitat niche) out of seven niche metrics considered. This niche modification was likely in response to habitat simplification (transition to a system dominated by turf algae) under ocean acidification. We further showed that, at the vents, the less abundant fishes had a negligible competitive impact on the most abundant and common species. This species appeared to expand its niche space, overlapping with other species, which likely led to lower abundances of the latter under elevated CO2. We conclude that niche plasticity across multiple dimensions could be a potential adaptation in fishes to benefit from a changing environment in a high-CO2 world.