Enhancing the efficiency of intercity transportation networks is crucial for sustainable regional transport development, significantly impacting travel behaviors and energy consumption. The transportation infrastructure within the city cluster is rapidly developing to accommodate the increasing traffic demand, necessitating substantial investments. It is imperative to investigate the effectiveness of intercity traffic within urban clusters, to evaluate the influence of transportation infrastructure enhancements on regional traffic efficiency. Circuity is a conventional metric used to assess the efficiency of transportation networks, primarily emphasizing distance, while overlooking factors such as travel time and traffic flow. In this study, the concept of circuity has been redefined in terms of travel time and has been referred to as the transportation network travel speed. Subsequently, the amalgamation of travel speed within the transportation network and traffic flow culminates in the proposition of Flow-Weighted Time Circuity (FWTC). Real-time intercity navigation data, offering accurate travel time estimations, are utilized to analyze the spatial distribution of intercity transport efficiency in the seven major city clusters of China, via both automobile and train modes of transportation. The results indicate that (1) as the travel distance extends, the speed of transportation within the network typically increases, albeit with increasing fluctuations, especially in the case of intercity train travel; (2) concerning the efficiency of intercity automobile travel, most city clusters demonstrate satisfactory performance, with the exception of the Guanzhong Plain. The Yangtze River Delta and Beijing–Tianjin–Heibei regions stand out for their superior performance. In terms of intercity train efficiency, the Yangtze River Delta, Beijing–Tianjin–Heibei, and Mid-Yangtze River regions exhibit higher levels of efficiency in intercity train transportation, while the Guanzhong Plain city cluster falls behind in this aspect. On the whole, the efficiency of intercity travel using automobiles surpasses that of train travel, indicating a pressing need for improvement in the latter.