Negative-ion Spectra Research Articles

Hydrated Formic Acid Clusters and their Interaction with Electrons.

We investigate ion formation in hydrated formic acid (FA) clusters upon collision with electrons of variable energy, focusing on electron ionization at 70 eV (EI) and low-energy (1.5-15 eV) electron attachment (EA). To uncover details about the composition of neutral clusters, we aim to elucidate the ion formation processes in FAM ⋅ WN clusters initiated by interaction with electrons and determine the extent of cluster fragmentation. EI predominantly produces protonated [FAm+H]+ ions, and in FA-rich clusters, the stable ring structures surrounding H3O+ ions are formed. In contrast, EA leads to a competition between the formation of intact [FAm ⋅ Wn]- and dissociated [FAm ⋅ Wn-H]- fragment ions, influenced by the cluster size, level of hydration, and electron energy. Our findings reveal a predisposition of low-energy EA towards forming [FAm ⋅ Wn]-, while higher electron energies tend to favor the formation of [FAm ⋅ Wn-H]- due to intracluster ion-molecule reactions. The comparison of positive and negative ion spectra suggests that the mass spectra of FA-rich clusters may indicate their actual size and composition. On the other hand, the more weakly bound water evaporation from the clusters depends strongly on the ionization. Thus, for the hydrated clusters, the neutral cluster size can hardly be estimated from the mass spectra.

Initial demonstration of microplasma ionization/Orbitrap mass spectrometry for molecular screening of perfluorinated compounds

Diverse PFAS compounds were determined for the first time with the liquid sampling-atmospheric pressure glow discharge (LS-APGD) ionization source coupled to an Orbitrap MS. Unique negative ion spectra and preliminary figures of merit are reported.

Secondary ion mass spectrometry, a powerful tool for revealing ink formulations and animal skins in medieval manuscripts.

Book production by medieval scriptoria have gained growing interest in recent studies. In this context, identifying ink compositions and parchment animal species from illuminated manuscripts is of great importance. Here, we introduce time-of-flight secondary ion mass spectrometry (ToF-SIMS) as a non-invasive tool to identify both inks and animal skins in manuscripts, at the same time. For this purpose, both positive and negative ion spectra in inked and non-inked areas were recorded. Chemical compositions of pigments (decoration) or black inks (text) were determined by searching for characteristic ion mass peaks. Animal skins were identified by data processing of raw ToF-SIMS spectra using principal component analysis (PCA). In illuminated manuscripts from the fifteenth to sixteenth century, malachite (green), azurite (blue), cinnabar (red) inorganic pigments, as well as iron-gall black ink, were identified. Carbon black and indigo (blue) organic pigments were also identified. Animal skins were identified in modern parchments of known animal species by a two-step PCA procedure. We believe the proposed method will find extensive application in material studies of medieval manuscripts, as it is non-invasive, highly sensitive and able to identify both inks and animal skins at the same time, even from traces of pigments and tiny scanned areas.

Predicted Negative Ion Photoelectron Spectra of 1-, 2-, and 9-Cyanoanthracene Radical Anions and Computed Thermochemical Values of the Three Cyanoanthracene Isomers.

In this work, the negative ion photoelectron spectra of 1-, 2-, and 9-cyanoanthracene (anthracenecarbonitrile, ACN) radical anions, obtained via the calculation of Franck-Condon (FC) factors based on a harmonic oscillator model, are reported. The FC calculations utilize harmonic vibrational frequencies and normal mode vectors derived from density functional theory using the B3LYP/6-311++G (2d,2p) basis set. The removal of an electron from the doublet anion allows for the computation of the negative ion photoelectron spectra that represents the neutral ground singlet state (So) and the lowest triplet state (T1) in each of the three ACN molecules. The respective adiabatic electron affinity (EA) values for the So state in 1-, 2-, and 9-ACN isomers are calculated to be 1.353, 1.360, and 1.423 eV. The calculated EA of the 9-cyanoanthracene singlet isomer is in close agreement with the previously reported experimental value of 1.27 ± 0.1 eV. Calculations show that the T1 states in 1-, 2-, and 9-ACN are located 1.656, 1.663, and 1.599 eV above the So state. The calculated T1 negative ion spectra exhibit intense vibrational origins and weak FC activity beyond the origins, indicating little change in geometry following electron detachment from the doublet anionic state. Upon deprotonation, the EA values of the radical isomers increase by ∼400-700 meV, resulting in neutral deprotonated radicals with EAs between 1.740 and 2.220 eV. The calculated site-specific gas-phase acidity values of ACN isomers indicate that ACN molecules are more acidic than benzonitrile.

Negative Ion Photoelectron Spectra of Deprotonated Benzonitrile Isomers via Computation of Franck-Condon Factors.

Negative ion photoelectron spectra of ortho (o-), meta (m-), and para (p-) deprotonated benzonitrile (o-, m-, p-C6H4(CN)-) isomers as well as the associated thermochemical values corresponding to deprotonation at o-, m-, and p-positions in C6H5(CN) are presented. Quantum mechanical results based on the density functional theory (DFT) utilizing the aug-cc-pVQZ basis set indicate that the o-, m-, p-C6H4(CN)● radicals have electron affinity values (EAs) of 1.901, 1.778, and 1.789 eV, respectively. The computed Franck-Condon (FC) factors give rise to o-, m-, and p-C6H4(CN)- negative ion spectra with FC active ring distortion vibrational modes with harmonic vibrational frequencies of ∼450, 760, and 1000 cm-1 as the dominant vibrational progressions. Deprotonation at the o-, m-, and p-positions in C6H5(CN) results in calculated gas-phase acidity values (ΔacidH298Ko) of 383.9, 385.7, and 385.3 kcal mol-1, respectively. The calculated ΔacidH298Ko is in close agreement with the previously reported high-pressure mass spectrometry experimental value of 383.4.0 ± 4.4 kcal mol-1. The computed ΔacidH298Ko and EAs are utilized to estimate the bond dissociation energy (DH298(H-C6H4CN)) associated with the formation o-, m-, and p-C6H4(CN)● using the negative ion thermochemical cycle: DH298(C6H5CN) = ΔacidH298Ko (H-C6H4(CN) + EA (C6H5CN)● - IP(H). The respective values of DH298(H-C6H4CN) corresponding to the formation of ortho, meta, and para C6H4(CN) radicals are 114.15, 113.11, and 113.51 kcal mol-1.

Effect of Hydration on Electron Attachment to Methanesulfonic Acid Clusters.

We report an experimental and computational study of the electron-induced chemistry of methanesulfonic acid (MSA, MeSO3H) in clusters. We combine the mass spectra after the 70 eV electron ionization with the negative ion spectra after electron attachment (EA) at low electron energies of 0-15 eV of the MSA molecule, small MSA clusters, and microhydrated MSA clusters to reveal the solvation effects. The MSA/He coexpansion only generates small MSA clusters with up to four molecules, but adding water substantially hydrates the MSA clusters, resulting in clusters composed of 1-2 MSA molecules accompanied by quite a few water molecules. The clustering strongly suppresses the fragmentation of the MSA molecules upon both the positive ionization and EA. The electron-energy-dependent ion yield for different negative ions is measured. For the MSA molecule and pure MSA clusters, EA leads to an H-abstraction yielding MeSO3-. It proceeds efficiently at low electron energies below 2 eV with a shoulder at 3-4 eV and a broad, almost 2 orders of magnitude weaker, peak around 8 eV. The hydrated (H2O)nMeSO3- ions with n ≤ 3 exhibit only a broad peak around 7 eV similar to EA of pure water clusters. Thus, for the small clusters, the electron attachment and hydrogen abstraction from water occur. On the other hand, the larger clusters with n > 4 display a peak below 2 eV, which quickly dominates the spectrum with increasing n. This peak is related to the formation of the H3O+·MeSO3- ion pair upon hydration and subsequent dipole-supported electron attachment followed by the hydronium neutralization and H3O• radical dissociation. The size-resolved experimental data indicate that the ionic dissociation of MSA starts to occur in the neutral MeSO3H(H2O)N clusters with about four water molecules.

Negative-ion field desorption revitalized by using liquid injection field desorption/ionization-mass spectrometry on recent instrumentation

Field ionization (FI), field desorption (FD), and liquid injection field desorption/ionization (LIFDI) provide soft positive ionization of gaseous (FI) or condensed phase analytes (FD and LIFDI). In contrast to the well-established positive-ion mode, negative-ion FI or FD have remained rare exceptions. LIFDI provides sample deposition under inert conditions, i.e., the exclusion of atmospheric oxygen and water. Thus, negative-ion LIFDI could potentially be applied to highly sensitive anionic compounds like catalytically active transition metal complexes. This work explores the potential of negative-ion mode using modern mass spectrometers in combination with an LIFDI source and presents first results of the application of negative-ion LIFDI-MS. Experiments were performed on two orthogonal-acceleration time-of-flight (oaTOF) instruments, a JEOL AccuTOF GCx and a Waters Micromass Q-TOF Premier equipped with LIFDI sources from Linden CMS. The examples presented include four ionic liquids (ILs), i.e., N-butyl-3-methylpyridinium dicyanamide, 1-butyl-3-methylimidazolium tricyanomethide, 1-butyl-1-methylpyrrolidinium bis(trifluoromethylsulfonyl)imide, and trihexyl(tetradecyl)phosphonium tris(pentafluoroethyl)trifluorophosphate), 3-(trifluoromethyl)-phenol, dichloromethane, iodine, polyethylene glycol diacid, perfluorononanoic acid, anionic surfactants, a tetraphosphazene silanol-silanolate, and two bis(catecholato)silanes. Volatile samples were delivered as vapors via the sample transfer capillary of the LIFDI probe or via a reservoir inlet. Condensed phase samples were applied to the emitter as dilute solutions via the sample transfer capillary. The compounds either yielded ions corresponding to their intact anions, A−, or the [M–H]− species formed upon deprotonation. This study describes the instrumental setups and the operational parameters for robust operation along with a discussion of the negative-ion LIFDI spectra of a variety of compounds.

Formation and fragmentation of doubly and triply charged ions in the negative ion spectra of neutral N-glycans from viral and other glycoproteins

Structural determination of N-glycans by mass spectrometry is ideally performed by negative ion collision-induced dissociation because the spectra are dominated by cross-ring fragments leading to ions that reveal structural details not available by many other methods. Most glycans form [M – H]- or [M + adduct]- ions but larger ones (above approx. m/z 2000) typically form doubly charged ions. Differences have been reported between the fragmentation of singly and doubly charged ions but a detailed comparison does not appear to have been reported. In addition to [M + adduct]- ions (this paper uses phosphate as the adduct) other doubly, triply, and quadruply charged ions of composition [Mn + (H2PO4)n]n- have been observed in mixtures of N-glycans released from viral and other glycoproteins. This paper explores the formation and fragmentation of these different types of multiply charged ions with particular reference to the presence of diagnostic fragments in the CID spectra and comments on how these ions can be used to characterize these glycans.Graphical abstract

Online composition detection and cluster analysis of Tibetan incense

Two optical technique: laser-induced breakdown spectroscopy (LIBS) and single particle aerosol mass spectrometry (SPAMS) were combined to study Tibetan incense. The ash and smoke of Tibetan incense were online detected with LIBS, and there existed more metal elements in the ash, such as Fe, Mg, Ba, Sr, Mn and so on. SPAMS technique focused on online recording mass spectra of the smoke, and the positive and negative ion spectra were obtained. What’s more, the lead isotopes in Tibetan incense smoke were analyzed and four isotopes (m/z = 204, 206, 207 and 208) were all observed in the mass spectrum. The principal component analysis (PCA) model was also introduced to achieve the clustering and classification of incenses, which could provide a reference for the traceability of particulate matter.

Analysis of kerogens and model compounds by time-of-flight secondary ion mass spectrometry (TOF-SIMS)

Here, kerogens of differing heat treatments are subjected to extremely high dissociation energies by sample bombardment by 25 keV Bi3+ primary ions during analysis by time-of-flight secondary ion mass spectrometry (TOF-SIMS). Positive and negative secondary ions are produced from this decomposition and fragment ion distributions of model compounds and kerogens are compared and starkly different results are obtained for cations versus anions. Cations exhibit a large range of C/H ratios and include highly unsaturated linear chain ions and aromatic ions. Cations of kerogens possess predominantly no heteroatoms. Positive fragment ion distributions depend on the source material being bombarded. Mature, more aromatic kerogens produce higher yields of fragment ions of highly unsaturated carbon chains while immature, more aliphatic kerogens produce more aromatic fragment ions, particularly at the higher carbon numbers. This is consistent with the observation that aromatic model compounds produce a greater fraction of hydrogen-deficient, carbon chain fragment ions, as compared to a purely aliphatic model compound. There is substantial suppression of free radical fragment cations, except for large fragments. In contrast, there is little free radical suppression of the anions. The anions tend to be very hydrogen deficient, spanning a small range of C/H ratios. Highly unsaturated to pure carbon chain fragment anions dominate while aromatic anions are not found. In both positive and negative ion spectra, the yields of fragment ions corresponding to derivatives of the carbon chain molecules, polyynes and allenes, are substantial. Some heteroatom-containing fragment anions are produced, all of which are very hydrogen deficient.

A device for controlling the energy of ionizing electrons in the low-energy range designed to form a complete mass spectrum of negative ions using a quadrupole mass spectrometer

Operation with positive ions formed from the impact of high energy electrons (usually 70 eV, which exceeds the ionization energy of the molecules) is a standard mode for mass spectrometric detectors of most gas chromatography-mass spectrometric complexes (GC/MS) in the basic configuration. At the same time, we have shown that the option of setting the energy of ionizing electrons (maintained in the design of some serial devices) within the pre-ionization region also allows one to obtain mass spectra of negative ions (NI) which, in turn, significantly expands the analytical potential of standard equipment. The formation of NI occurs in the low-energy range of 0 – 15 eV due to resonant capture of electrons by molecules (REC). In contrast to positive ions, the intensity of NI formation sharply (resonantly) depends on the electron energy and this dependence is characteristic of each chemical compound. Both the relative intensity of the mass-peaks and, in general, the ionic composition of the formed mass spectrum of NI significantly depend on the electron energy. The problem of choosing the optimal energy of ionizing electrons providing the same efficiency of mass-spectrometric determination of all components of complex mixtures of dissimilar compounds is also associated with the features of negative ion formation during chromatography-mass spectrometric analysis. To address the problem, we propose a technique providing generation of complete (in NI composition and intensities) mass spectra of NI through repeated variation of the energy of ionizing electrons in a given range of 0 – 10 eV. Technical implementation of the technique [1] was carried out at the Design Bureau «Chromatec «(Yoshkar Ola, Russia) in the form of a special electronic device, which was tested in pilot operation as part of the gas chromatograph complex with a quadrupole mass spectrometer «Chromatec». We describe the principle of operation of the device and present the results of tests.

Exploring Chemical Structures From Cortex Lycii, Based on Manual and Automatic Analysis of the HPLC-Q-TOF-MS Data

Cortex Lycii, the root barks of Lycium barbarum and L. chinense, known as “di gu pi” in traditional Chinese herbal drugs, is an important ingredient of formulations used for treating a variety of diseases. During the last 3 decades, more than 70 chemical entities have been separated and purified from either the aqueous or aqueous ethyl alcohol extracts of Cortex Lycii. In this study, high-performance liquid chromatography together with quadrupole-time-of-flight mass spectrometry (MS) was employed to explore new analog structures from aqueous ethyl alcohol extracts (50%, v/v), which led us to discover 4 new phenolic amides and a new cyclic peptide. The structure-based manual screening method, on the basis of the analysis of the fragmentation pathway of the previously known compounds, was used to make a preliminary analysis of the negative total ion chromatography and negative extract ion spectra. Three ions at m/ z 472.1, 314.1, and 445.2 were assigned to phenolic amides, and by further analysis of their MS/MS data, the structure of 1, corresponding to one of them ( m/ z 314.1), was illustrated as an analog of the known compound KN1. A parent ion at m/ z 856.1 was assigned to a cyclic peptide analog (2) in the manual analysis procedure. Furthermore, the MS/MS data were profiled on the Global Natural Product Social Molecular Networking (GNPS, https://gnps.ucsd.edu/ProteoSAFe/static/gnps-splash.jsp ) workflow to weave a visualization molecular network. Three more new analog ions ( m/ z 604.3 [3], 597.3 [4], and 611.3 [5]) were found in the aggregation of KN5 and KN7, and their structures were all determined by comparisons with known compounds. This manual and networking automatic screening method may provide a sensitive and efficient procedure to facilitate the mining of novel trace components.

Source Apportionment and Mixing State of Single Particles in the Nanjing Jiangbei New Area

To characterize the ambient particles in the Nanjing Jiangbei New Area, a single particle aerosol mass spectrometer (SPAMS) was deployed from December 1 to 31, 2015. A total of 7.478 million particles were analyzed with both positive and negative ion spectra. The air quality of Nanjing during the measurement period was poor, and the percentage of pollution days was 49.2%. The correlation (R) between the SPAMS particle number and PM2.5 concentration was 0.83, showing that the particle number could reflect the trend in the variation of atmospheric pollution. The dominant pollutant source at the monitoring site was coal combustion, followed by vehicle emissions and industrial emissions, with a contribution ratio of 63.5%. The increase in the PM2.5 mass concentration was accompanied by a high proportion of coal combustion or vehicle emissions. A high mixing state between EC, ECOC, and OC and NO2-, NO3-, and SO4- was observed for the sources of biomass burning, dust, vehicle emissions, coal combustion, and industrial emissions.

Fortuitous Ion-Molecule Reaction Enables Enumeration of Metal-Hydrogen Bonds Present in Gaseous Ions.

Upon mass selection and ion activation under mass spectrometric conditions, gaseous formate adducts of many metal formates undergo decarboxylation and form product ions that bear metal–hydrogen bonds. Fortuitously, we noted that negative-ion spectra of several such formate adducts showed many peaks that could not be rationalized by the conventional fragmentation pathways attributed to the precursor ion. Subsequent experimentation proved that these enigmatic peaks are due to an ion–molecule reaction that takes place between traces of adventitious water vapor in the collision gas and the in situ formed product anions bearing metal–hydrogen bonds, generated by the fragmentation of the formate adducts. Results show that metal–hydrogen bonds of the group 2 elements are particularly susceptible to this reaction. For example, in the product-ion spectrum of [Sr(η2-O2CH)3]−, the peak at m/z 91 for SrH3– was accompanied by three peaks at higher m/z ratios. These peaks, at m/z 107, 123, and 139, represented SrH2(OH)1–, SrH1(OH)2–, and Sr(OH)3–, respectively. These satellite peaks, which were separated by 16 m/z units, were attributed to adducts formed due to the high affinity of gas-phase anions bearing metal–hydrogen bonds to water. Although undesired, these peaks are diagnostically useful to determine the number of metal–hydrogen bonds present in a precursor ion. Even though the peaks were less pronounced, analogous reactions were noted from the adducts of the group 1 elements as well. Moreover, Gibbs free energy values computed for the interaction of [H-Mg(η2-O2CH)2]− with water to form [HO-Mg(η2-OCOH)2]− and H2 indicated that this is an exergonic reaction.

Dissociation of Molecular Negative Ions of Tetracyanoquinodimethane at the Ionization-Chamber Surface upon Resonance Electron Capture

The mass spectrum of negative ions due to resonance electron capture by molecules of tetracyanoquinodimethane (TCNQ), a well-known electron acceptor, has been recorded in order to identify the dissociation processes of TCNQ molecular negative ions on the surface of an ionization chamber at thermal energies of electrons to be attached to the molecules. It has been found that the TCNQ molecular negative ions, preliminarily generated in the gas phase at several resonance maxima, reach the ionization chamber walls owing to a long extra-electron autodetachment lifetime ranging from 25 s in the first resonance at zero electron energy to 0.2 s in the resonance at 3.3 eV and dissociate at the walls as a result of the influence of the surface on the energy balance of the dissociation process. It has been taken into account that without the surface effect on the energy balance, this dissociation would be impossible because of an insufficient energy of the electron captured by the molecule. By B3LYP/6-311G calculations, the most probable dissociation pathways have been determined for negative fragment ions with various empirical formulas. The data obtained can be used to solve problems related to the properties of the TCNQ molecule in interaction with the conductive surface of a metal substrate in electronic devices.

ToF‐SIMS and computation analysis: Fragmentation mechanisms of polystyrene, polystyrene‐d5, and polypentafluorostyrene

We studied the time‐of‐flight secondary ion mass spectrometry fragmentation mechanisms of polystyrenes—phenyl‐fluorinated polystyrene (5FPS), phenyl‐deuterated polystyrene (5DPS), and hydrogenated polystyrene (PS). From the positive ion spectra of 5FPS, we identified some characteristic molecular ion structures with isomeric geometries such as benzylic, benzocyclobutene, benzocyclopentene, cyclopentane, and tropylium systems. These structures were evaluated by the B3LYP‐D/jun‐cc‐pVDZ computation method. The intensities of the C7H2F5+ (m/z = 181), CyPent‐C9H3F4+ (m/z = 187), CyPent‐C9H4F5+ (m/z = 207), and CyPent‐C9H2F5+ (m/z = 205) ions were enhanced by resonance stabilization. The positive fluorinated ions from 5FPS tended to rearrange and produce fewer fluorine‐containing molecular ions through the loss of F (m/z = 19), CF (m/z = 31), and CF2 (m/z = 50) ion fragments. Consequently, the fluorine‐containing polycyclic aromatic ions had much lower intensities than their hydrocarbon counterparts. We propose the fragmentation mechanisms for the formation of C5H5+, C6H5+, and C7H7+ ion fragments, substantiated with detailed analyses of the negative ion spectra. These ions were created through elimination of a pentafluoro‐phenyl anion (C6F5−) and H+, followed by a 1‐electron‐transfer process and then cyclization of the newly generated polyene with carbon‐carbon bond formation. The pendant groups with elements of different electronegativities exerted strong influences on the intensities and fragmentation processes of their corresponding ions.

Dicarboxylic acids analyzed by time-of-flight secondary ions mass spectrometry. Part III: Pentanedioic acid

Time-of-flight secondary ion mass spectrometry was carried out to analyze a commercially available butanedioic acid (succinic acid) powder. Positive and negative polarity ion spectra were obtained using a 25 keV Bi3+ ion beam rastered over areas of 50 × 50 μm2. The main observed fragments were the protonated molecule [M+H]+ at 119 Da and the deprotonated molecule [M-H]− at 117 Da with their respective oligomers.

Dicarboxylic acids analyzed by time-of-flight secondary ions mass spectrometry. Part IV: Hexanedioic acid

Time-of-flight secondary ion mass spectrometry was carried out to analyze a commercially available hexanedioic acid (adipic acid) powder. Positive and negative polarity ion spectra were obtained using a 25 keV Bi3+ ion beam rastered over areas of 50 × 50 μm2. The main observed fragments were the protonated molecule [M+H]+ at 105 Da and the deprotonated molecule [M-H]− at 103 Da with their respective oligomers.

Dicarboxylic acids analyzed by time-of-flight secondary ions mass spectrometry. Part VI: Oxanedioic acid

Time-of-flight secondary ion mass spectrometry was carried out to analyze a commercially available octanedioic acid (suberic acid) powder. Positive and negative polarity ion spectra were obtained using a 25 keV Bi3+ ion beam rastered over areas of 50 × 50 μm2. The main observed fragments were the protonated molecule [M+H]+ at 105 Da and the deprotonated molecule [M-H]− at 103 Da with their respective oligomers.

Dicarboxylic acids analyzed by time-of-flight secondary ions mass spectrometry. Part V: Heptanedioic acid

Time-of-flight secondary ion mass spectrometry was carried out to analyze a commercially available heptanedioic acid (pimelic acid) powder. Positive and negative polarity ion spectra were obtained using a 25 keV Bi3+ ion beam rastered over areas of 50 × 50 μm2. The main observed fragments were the protonated molecule [M+H]+ at 105 u and the deprotonated molecule [M-H]− at 103 Da with their respective oligomers.