Lebetin 2 (L2), a natriuretic-like peptide, exerts potent cardioprotective effects in experimental myocardial ischemia (MI), as well as additional cardiac actions compared to human B-type natriuretic peptide (BNP). Here, we determined by a computational approach the dynamic interaction of L2 with natriuretic receptors (NPRs), to understand its molecular mechanism of action and to develop therapeutics for the treatment of coronary disease. We used homology modeling, protein-peptide docking and molecular dynamics (MD) simulation to assess interaction parameters between L2 and NPRs. L2 binding affinity was studied for different NPR species (human, rat, mice and chicken), and L2 dynamic interaction was assessed for human NPRs. Our data show that L2 has a higher binding affinity and a stronger interaction for the three human NPRs (NPR-A, -B and -C) compared to BNP. L2 binds NP receptors with an affinity preference to NPR-A>NPR-C>NPR-B. L2 also binds to human NPR-A and NPR-C with a higher affinity than in other species. NPR-C binding to L2 was found to be higher than that of BNP in all species. Likewise, the L2/NPR-C complex has been shown to have the most favorable interaction compared to other NP receptors. Using an in silico approach, we determined that, compared to BNP, L2 has a higher binding affinity and a stronger interaction to human NPRs, especially to types A and C receptors. Our results suggest that the discrepancies previously reported between L2 and BNP actions during MI could be attributed to differences in their affinities to natriuretic receptors. More specifically, the high affinity of L2 to NPR-C could provide further explanation on how L2 acts during cardiac ischemia. These features make L2 a promising candidate for drug design towards new compounds with high activity, affinity, stability, and fewer adverse effects, and pave the way for the future design of small molecule therapeutics.
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