Native Goat Breeds Research Articles

Effect of Breed and Season in Buck Semen Cryopreservation: The Portuguese Animal Germplasm Bank.

The aims of this study were to characterize the semen as well as the influence of breed, season, and semen processing on spermatozoa (SPZ) traits of four native Portuguese goat breeds used for the bank of Portuguese animal germplasm (BPAG). A total of 1017 ejaculates from Serrana (n = 30), Bravia (n = 15), Charnequeira (n = 11), and Preta de Montezinho (n = 3) bucks were collected between 2004 and 2020 at (EZN-INIAV; 39° N) during the whole year under natural conditions. All the fresh and cryopreserved (-196 °C) semen was evaluated and stored in the BPAG. Bravia bucks (the smallest breed) produced less (p < 0.05) volume of ejaculate than all the other breeds, which was higher during the full breeding season (September-January; p < 0.05), regarding all the other breeds. Contrarily, in general, SPZ concentration was lower during September-January, but total SPZ per ejaculate remained similar (p > 0.05) during May-August and September-January in Serrana bucks. The SPZ viability and SPZ midpiece defects were slightly influenced by breed and SPZ head defects by season (lowest % in February-April; p < 0.05). On the contrary, the freezing-thawing cycle strongly influenced (p < 0.01) all SPZ traits. The correlation coefficients of these traits between fresh and thawed SPZ were low (up to 0.33; p < 0.01), highlighting the importance of semen processing in semen cryopreservation. We conclude that breed and season had a relevant effect on ejaculate traits, but it was much less evident for the studied SPZ traits. These native goats can serve as semen donors throughout the year, under natural conditions.

Microsatellite-based bottleneck analysis and migration events among four native Turkish goat breeds

Abstract. Molecular data analyzed by accurate statistical approaches not only have the potential to investigate demographic events faced in the past, e.g., migration, but they also offer significant hints such as bottleneck effects to take suitable measures for sustainable breeding in farm animals. In this study, the genetic bottleneck and migration events among four native Turkish goat populations, i.e., Hair, Honamlı, Kabakulak, and Norduz, were assessed using 367 multi-allelic data belonging to 28 microsatellite loci. The null hypothesis was not rejected for the Wilcoxon sign rank test in the infinite allele model, two-phase model, and stepwise mutation model, while a normal L-shaped distribution of allele frequencies was observed in terms of mode-shift indicators in four native Turkish goat populations. Both the Wilcoxon sign rank test and the mode-shift indicator demonstrated that Anatolian goat populations have had a lack of recent genetic bottlenecks and have maintained their effective population sizes over the generations. Moreover, the 95 % confidence interval confirmed that the effective population sizes of Hair, Honamlı, and Kabakulak may reach infinity, while the highest effective population size for Norduz was estimated at 794.5, when the lowest allele frequency was considered to be 0.01. Up to four migration events revealed a significant migration from Norduz to Hair and Kabakulak populations. In contrast, no migration from other populations to Norduz was observed, most probably due to its geographic isolation. The bottleneck results may serve as a guide for future management practices, whereas further studies, especially on a whole-genome basis, are needed to confirm migration events among Anatolian goat breeds.

Genomic analysis uncovers novel candidate genes related to adaptation to tropical climates and milk production traits in native goats

BackgroundSince domestication, both evolutionary forces and human selection have played crucial roles in producing adaptive and economic traits, resulting in animal breeds that have been selected for specific climates and different breeding goals. Pakistani goat breeds have acquired genomic adaptations to their native climate conditions, such as tropical and hot climates. In this study, using next-generation sequencing data, we aimed to assess the signatures of positive selection in three native Pakistani goats, known as milk production breeds, that have been well adapted to their local climate.ResultsTo explore the genomic relationship between studied goat populations and their population structure, whole genome sequence data from native goat populations in Pakistan (n = 26) was merged with available worldwide goat genomic data (n = 184), resulting in a total dataset of 210 individuals. The results showed a high genetic correlation between Pakistani goats and samples from North-East Asia. Across all populations analyzed, a higher linkage disequilibrium (LD) level (– 0.59) was found in the Pakistani goat group at a genomic distance of 1 Kb. Our findings from admixture analysis (K = 5 and K = 6) showed no evidence of shared genomic ancestry between Pakistani goats and other goat populations from Asia. The results from genomic selection analysis revealed several candidate genes related to adaptation to tropical/hot climates (such as; KITLG, HSPB9, HSP70, HSPA12B, and HSPA12B) and milk production related-traits (such as IGFBP3, LPL, LEPR, TSHR, and ACACA) in Pakistani native goat breeds.ConclusionsThe results from this study shed light on the structural variation in the DNA of the three native Pakistani goat breeds. Several candidate genes were discovered for adaptation to tropical/hot climates, immune responses, and milk production traits. The identified genes could be exploited in goat breeding programs to select efficient breeds for tropical/hot climate regions.

Prolactin gene (C576A) polymorphism is associated with milk production performance in crossbred Anglo-Nubian dairy goats

Crossbred Anglo-Nubian goats (Anglo-Nubian × native goat breeds), are valued for exceptional milk production and adaptability. In-depth research on these goats is imperative to propel advancements in dairy goat breeds and enhance milk production efficiency within the region. The present study aims to assess polymorphism in prolactin (C576A) gene and determine the influence of different prolactin (PRL) genotypes to milk yield performance in crossbred Anglo-Nubian dairy goats raised from Awang, Opol, Misamis Oriental and Talay, Dumaguete City, Negros Oriental. Genomic DNA was extracted from hair follicles using commercial DNA extraction kit and PCR-RFLP was performed for the genotyping of the C576A polymorphism located in exon 5 of goats’ prolactin gene using Eco241 restriction enzyme. Genotypic frequencies of 0.56 for AA, 0.44 for AB, while allelic frequencies of 0.78 for A, and 0.22 for B were recorded. All populations followed the Hardy–Weinberg principle, except for dairy goats from Farm A located in Opol, Misamis Oriental. A two-way factorial (2 × 4) in a Randomized Complete Block Design was used to evaluate the relationship between genotypes and milk yield performance. AB genotype goats produced significantly higher milk yield traits (average daily milk yield and total milk production) than AA genotype, an indication that the polymorphism in the caprine PRL (C576A) gene influenced milk yield performance in the population of studied crossbred Anglo-Nubian goats. These results have to be validated in other dairy goat breeds.

Can Sustainability and Biodiversity Conservation Save Native Goat Breeds? The Situation in Campania Region (Southern Italy) between History and Regional Policy Interventions

The Campania region has a genetic heritage, both vegetal and animal, of great scientific interest, but many genetic resources risk extinction or abandonment. Thus, from a sustainability perspective, their conservation is very important and represents an imperative to allow future generations to satisfy their needs just as we are doing today. The aims of the present paper were to describe the current consistency and importance of goat farming in Italy and in the Campania region and to study its trend from 1861 to understand whether the policies for the sector implemented over time have been sufficient to conserve goat biodiversity. To these ends, the latest available data of the national livestock register of the Italian Ministry of Health, those of the different available Italian agricultural censuses, and historical–cultural documents published over time for the livestock sector were acquired and consulted to describe the goat sector and reconstruct its temporal trend. The results showed that in Italy there are just over 1,000,000 goats (the same consistency as 60 years ago), 50% of which are distributed in the southern regions, and 50,616 farms with goats, 43% of which are extensive. In this contest, the Campania region represents approximately 5% of the national goat population. The continuous decrease in the size of the national and regional goat heritage since the 1920s is the result of the agricultural policy instruments implemented for the livestock sector over time, which have effectively excluded the goat sector. Two small increases in the number of caprines were registered: the first in 1980s, when the Italian scientific community realized that the native goat genetic types, its milk and its organoleptic and dietary qualities could constitute a wealth of endogenous resources that needed to be valorized; the second, in the last decade, due to the actions of sustainability and biodiversity conservation implemented at the national and regional level. At the same time, today the goat sector continues to have a marginal role in the national and regional agricultural economy, and the survival of native goat farming is essentially ensured by sustainable rural communities conceived as the custodians of biodiversity.

Hematological parameters of sheep and goats fed diets containing various amounts of water hyacinth (Eichhornia crassipes).

A major global barrier to increased animal output is nutrition. The use of aquatic plants, which were previously considered to be waste and needed a lot of labor to eliminate, has recently come to light due to the lack of feed during the dry season in the majority of tropical regions of Africa. The objectives of this study were therefore to see how different dietary Eichhornia crassipise inclusion rates affect the hematological indicators of Ethiopian Doyogena sheep and Woyto-Guji goats. Blood samples were taken from the jugular veins of 12 Doyogena sheep and 12 Woyto-Guji goats in a 2 × 4 randomized crossover design with two animal species, four diets, and four random periods (15 - day adaption period followed by a 7- day experimental diet in each period). The dietary inclusion rates E. crassipise were 0, 25, 50, and 75% that was used as a replacement for commercial concentrate mix diet in the treatment groups. The data was analyzed using the SAS software programme PROC GLM, and Pearson's correlation coefficient was calculated between hematological markers. The hemoglobin (Hb), red blood cell count (RBC), packed cell volume (PCV), mean corpuscular volume (MCH), and mean corpuscular hemoglobin (MCHC) results revealed substantial, RDW-SD, and WBC differences between animal species (P < 0.001). Sheep had greater WBC, Hb, RBC, PCV, RDW-SD, and RDW-CV levels, while goats had higher MCH and MCHC values (P < 0.001). For the analyzed hematological measures, the Pearson's correlation coefficient ranged from low to strong in terms of positive and negative associations (P < 0.05). Since all hematological indicators were closer to those of clinically healthy native Ethiopian sheep and goat breeds, feeding water hyacinth to sheep and goats up to a 75% inclusion level in diets without producing sickness may provide a remedy for adverse feed shortages.

Genomic characterization and diversity of indigenous goat breeds from Croatia

Goats have been undervalued and marginalized in the past despite their high productivity compared to other ruminants. Today, many goat breeds encounter the threat of extinction due to factors such as small population size, geographic isolation, lack of economic competition, and declining interest in breeding. In order to determine the population structure and level of diversity of Croatian goats, we conducted population-level SNP genotyping. The aim of our study was to evaluate the genetic relatedness between Croatian breeds and other European goat breeds. We genotyped a total of 44 animals representing native Croatian goat breeds, including the Croatian Colored Goat (CCG) and the Istrian Goat (CIG), with the Illumina Goat_IGGC_65K_v2. We also included publicly available goat breeds from Europe, mainly from the Mediterranean region. The two indigenous Croatian goat breeds differ in morphological and productive traits, which is reflected in their genetic diversity and breed segregation. While CCG showed clear breed separation and genetic similarity to Balkan breeds, CIG showed higher heterogeneity with genetic closenes to Austrian Alpine breeds. PCA, Admixture and TreeMix analyses did not detect any genetic influence of Boer goat on Croatian goat breeds. Despite the small effective population size of the Istrian Goat (Ne = 27), both breeds show a high degree of genetic variability with low inbreeding (FROH>2Mb = 0.054 and FROH>2Mb = 0.059, for CCG and CIG, respectively). However, the Istrian Goat requires careful conservation planning due to the small number of individuals and limited breeding area. Our results could be valuable for future conservation and breeding programmes aimed at conserving and sustainably using these important genetic resources.

Optimizing selection strategy for enhancing reproduction efficiency in Indian crossbred goats using milk productivity as a selection criterion.

The present study was aimed at optimizing the selection strategy for enhancing reproductive efficiency and milk productivity of Alpine × Beetal crossbred goats. The data set included 2949 milk trait records across parities and 1389 milk records from first parity and corresponding reproductive traits. The traits included for analysis were 150-day milk yield (150DMY), days in milk (DIM), peak yield (PY) and total milk yield (TMY). The litter size (LS) and litter weight (LW) were used for specifically formulating selection plan using indirect selection. The least squares mean for lactation traits during the first parity were 150DMY: 195.32 ± 2.09 kg, DIM: 236.42 ± 3.04 days, PY: 1.82 ± 0.02 kg, TMY: 269.62 ± 4.52 kg. Notably, Alpine × Beetal goats demonstrated genetic superiority pan India for milk productivity as compared to other native goat breeds. The least squares mean for 150DMY across all parities was 236 ± 3.13 kg. An animal model employing average information restricted maximum likelihood was used for (co)variance component estimation to get the genetic parameters. The analysis revealed total heritability estimates for 150DMY, DIM, PY and TMY as 0.18 ± 0.06, 0.04 ± 0.04, 0.12 ± 0.06 and 0.08 ± 0.05, respectively. Repeatability estimates for 150DMY, DIM, and TMY were 0.28 ± 0.04, 0.21 ± 0.03 and 0.37 ± 0.03, respectively. Bivariate analysis of 150DMY with reproductive traits revealed heritability for LS and LW as 0.05 ± 0.01 and 0.10 ± 0.01, respectively using Gibbs sampling. Strong and positive genetic correlations of 150DMY with other production and reproduction traits was observed, such as DIM (0.72), PY (0.98), TMY (0.88), LS (0.57) and LW (0.33). Moderate heritability and repeatability estimate of 150DMY, along with its positive correlation with production and reproductive traits suggested it as a suitable selection criterion for early selection and overall genetic progress of lactation traits. The genetic trend analysis showed an overall improvement in all these traits, with observed gain of 98.4 g per year for 150DMY, 0.04 days per year for DIM, 0.5 g per year for PY and 220.5 g per year for TMY. We observed that selecting based on 150DMY would lead to a favourable indirect improvement for LW as 79 g and LS 0.04 units per generation. We, therefore, recommend employing 150DMY as the single trait selection criteria to enhance both milk productivity and reproductive potential of Alpine × Beetal goats.

Determinants of puberty and age of sexual maturity in Nigerian indigenous breeds of male goats

This study was conducted to ascertain the pubertal and sexual maturity characteristics of Nigerian native goat breeds. The research was carried out on three goat breeds; Sahel (SG), Red Sokoto (RSG), and West African Dwarf (WAD) goats. Each breed was represented by eight (8) animals (n=24) and housed in separate pens based on breed type. All bucks were weighed at birth and bi-weekly using digital weighing scales until they reached puberty. Scrotal circumference measurements were taken every two weeks until the end of the study. Semen was collected immediately after preputial separation and all semen samples were labelled and placed in a thermo-flask immediately and subsequently transported to the laboratory for evaluation. The mass motility and the forward motilities of the spermatozoa were observed using a light microscope. The percentage of live, dead, and abnormal sperms were determined after staining with eosin and negrosin stains. The sperm cell concentration was determined by counting spermatozoa with a hemocytometer. Result obtained indicate that at the 14th and 16th weeks of age, the mean scrotal circumference of bucks ranged from 5.14±0.66 cm to 7.06±0.71 cm, 6.32±0.29 cm to 8.05±0.42 cm, and 5.50±0.74 cm to 7.06±0.71 cm in SG, RSG, and WAD bucks, respectively. Puberty in Red Sokoto bucks was achieved at an average age of 14 weeks, with a mean sperm concentration of (116.17±28.47 x 106), progressive sperm motility of (65.00±9.92%), and a mean body weight of 10.17±1.26 kg. Sahelian and WAD bucks reached puberty at the 16th weeks, with sperm concentrations of 106.29±25.18 x 106 and 107.60±19.99 x 106, mean sperm motility of 65.00±9.94% and 76.00±4.8%, and mean body weights of 11.29±1.59 kg and 7.78±0.70 kg, respectively. To summarise, this study revealed that breed, age, scrotal circumference and body weight at puberty played significant roles in determining sperm characteristics and sexual maturity.

Effect of Adding Coconut Water (Cocus viridis) on Liquid Semen Quality of Kacang Goats (Capra aegagrus hircus) Stored at 4-5° C

The best semen quality is necessary for successful Artificial Insemination. Increasing population of Kacang goat, which is a native Indonesian goat breed can reach with the application of AI technology. It can support the suffice of national meat demand. The purpose of this study was to determine the effect of adding coconut water (CW) in the Skim Yolk Diluent (SYD) and storage time at a cold temperature of 4-5 C on the quality of liquid semen of Kacang goat. The research material was four Kacang goats aged 1 - 1.5 years, SYD, and coconut water. The research method was an experiment with a factorial randomized block design (RBD) consisting of two factors. The first factor is the addition of coconut water in SYD (D), namely D0 = 100% SYD + 0% CW; D1= 30% SYD + 70% CW; D2= 20% SYD + 80% CW; D3= 10% SYD + 90% CW. The second factor is the storage time of liquid cement at a temperature of 4-5°C (H), namely H0 = 0 days; H1= 1 day; H2 = 2 days, and H3 = 3 days. The treatment was repeated 10 times. Data were analyzed by Anova and further test using Duncan's multiple distance test. The results showed that the combination treatment showed a significantly different interaction effect (P&lt;0.05) on the percentage of motility and abnormalities and the highly significant different interaction effect (P&lt;0.01) on the percentage of spermatozoa viability. The best mean of motility, viability and abnormality was found in the D3H0 treatment. The conclusion is that the addition of coconut water in SYD can be done up to 90% with the time storage at 4-5ºC cold for 3 days because it is still able to maintain the quality of the Kacang goat liquid semen with a motility percentage more than 40%.

Ecogroups and maternal haplogroups reveal the ancestral origin of native Chinese goat populations based on the variation of mtDNA D-loop sequences.

China is rich in goat breeding resources. Officially recognized local goat breeds are mainly distributed in agro-ecological regions. The population structure and matrilineal origin of native Chinese goats can be used to formulate protection and utilization strategies for these genetic resources. In this study, the genetic structure and maternal origin of native Chinese goats were investigated using mtDNA D-loop sequences. A total of 329 goat samples from 25 Chinese indigenous goat populations and five introduced goat breeds from abroad were collected; these populations were distributed in four ecogroups designated as Southwest, South-central, the North China Plain, and Foreign-ecogroup. A larger average number of nucleotide differences and richer nucleotide diversity were observed in South-central and Foreign-ecogroup, whereas these were lower in Southwest. The 216 haplotypes divided into several haplogroups, of which HapA contained 99 haplotypes distributed in Southwest, the North China Plain, and Foreign-ecogroup with high frequency (0.53-0.77), whereas the frequency of HapA in South-central was <0.09. HapB was mostly found in South-central (0.5538) and was distributed to the North China Plain (0.2667), while it was rare in Southwest (<0.08) and Foreign-ecogroup (<0.07). According to the estimation of kinship and ancestry, HapA had five ancestors (A2, A3, A5, A10, and A12), HapB had a single maternal ancestor (A8), and HapC had two maternal ancestors (A1 and A4). This study showed that native Chinese goat breeds were mainly divided into three haplogroups (HapA, HapB, and HapC) and goat populations have expanded in the ecological regions.

Genetic Distance and Gene flow in Two Breeds of Nigerian Indigenous Goats Using Restriction Fragment Length Polymorphic Marker

Due to their hardness in severe weather, capability to yield milk and meat, fast generation times, and goats constitute an indispensable part of rural agricultural systems due to their capacity to withstand the substandard diets that are provided by restricted grazing on marginal soils. Gene flow, genetic distance, genotype frequencies, and alleles were investigated using two native goat breeds from Nigeria. Investigational goat populations included Red Sokoto (50) and WAD (45). For each animal, an ethylenediaminetetraacetic acid (EDTA) container was filled with approximately 5 milliliters of aseptic blood taken. Polymorphism of restriction fragment length and Agarose gel electrophoresis were carried out after the DNA samples were isolated and purified.Hardy-Weinberg equilibrium (HWE), gene allele frequency, anticipated and observed heterozygousities (He and Ho, respectively), and populations were compared based on their genetic distances. The degree of genetic diversity was great.According to the findings, Red Sokoto and WAD exhibited the highest genetic similarity (0.9996) and the lowest genetic distance (0.0004) between the two populations. If more animals from different goat breeds are collected, improved genetic research and marker-assisted selections in goat improvement programs would be achievable.

The effect of insulin-like growth factor 1 receptor gene single nucleotide polymorphism on growth and milk production traits in two native Indian tropical goat breeds

Insulin like growth factor1(IGF-1) is an essential growth factor that mediates the growth-promoting functions of pituitary growth hormone. Insulin like growth factor 1 receptor (IGF1R) is a tyrosine kinase receptor that mediates the actions of IGF1. Therefore, IGF1R is a candidate gene for examining SNPs linked with growth and production traits. The objective of this study was to detect the c.546 + 179170A > T transversion in intron 2 of the gene encoding IGF1R in two goat breeds, Attappady Black and Malabari, and examine the association of this polymorphism with growth and milk production. For the identification of the SNP, the T-ARMS-PCR was utilized. All three genotypes were present in the two investigated breeds. The polymorphism was found to be significantly (p < 0.05) linked with growth traits. At birth, 3 and 6 months of age, Attappady goats with the AT genotype had significantly (p < 0.05) higher body weights than those with the AA and TT genotypes. Malabari goats with the AT genotype had significantly (p < 0.05) higher body weights at birth and at 3 months of age. The genotypes of the IGF1R gene had no effect on total or peak milk production. Therefore, this SNP could be used as a molecular marker in selection of meat-producing goat breeds. HIGHLIGHTS c.546 + 179170A > T IGF1R transversion was detected using T-ARMS-PCR in two indigenous goat breeds from Kerala. Attappady Black and Malabari goat breeds of Kerala possessed all the three genotypes In these breeds, there was a significant correlation between this SNP, c.546 + 179170A > T IGF1R, and body weight. In both the breeds, there was no association between this SNP and milk production traits.

Peeping into Mitochondrial Diversity of Andaman Goats: Unveils Possibility of Maritime Transport with Diversified Geographic Signaling.

Andaman and Nicobar Islands, a part of South-East Asia, is enriched with the presence of native breeds of livestock (cattle, pig, goat) and poultry. There are two native goat breeds, viz., Andaman local goat and Teressa goat in Andaman and Nicobar Islands. However, to date, the origin and genetic makeup of these two breeds have not been detailed. Therefore, the present study describes the genetic makeup of Andaman goats through analysis of mitochondrial D-loop sequence for sequence polymorphism, phylogeographical signaling and population expansion events. The genetic diversity of the Teressa goat was less compared to the Andaman local goat due to its sole presence on Teressa Island. Out of 38 well-defined haplotypes of Andaman goats, the majority of haplotypes belonged to haplogroup A followed by haplogroup B and haplogroup D. The result of mismatch distribution and neutrality tests indicated no population expansion event of haplogroup A and B. Finally, based on poor geographical signaling, we hypothesize that Andaman goats have been imported to these Islands either through multidirectional diffusion or unidirectional diffusion. We justify our hypothesis of multidirectional diffusion on the basis of observation of the haplotype and nucleotide diversity of Andaman goats. Simultaneously, the probability of unidirectional diffusion of goats in these islands from the Indian subcontinent in different spells of domestication events through maritime routes cannot be ignored.

A New AS-PCR Method to Detect CSN201 Allele, Genotyping at Ca-Sensitive Caseins Loci and Milk Traits Association Studies in Autochthonous Lazio Goats.

Calcium-sensitive caseins are the main protein component of milk. In the goat, they are encoded by three genes (CSN1S1, CSN2, and CSN1S2) located on chromosome 6. A high number of alleles has been discovered for these genes in the goat species, responsible for changes in the milk's qualitative and quantitative characteristics. This study aimed to develop an Allele-Specific PCR (AS-PCR), which allowed us to unequivocally detect goat carriers of the CSN201 allele. Subsequently, the calcium-sensitive casein loci genotype was investigated in three native goat breeds of the Lazio Region (Bianca Monticellana, Capestrina, and Ciociara Grigia). No individuals were carriers of the CSN1S101, CSN1S1E, CSN201, CSN1S2D, and CSN1S20 alleles, while a high frequency of the alleles CSN1S1F and CSN1S1A*,B* was observed. Association analyses between the different genotypes at the CSN1S1&amp;nbsp;locus and some milk traits, namely the fat and protein yielded and the fat, protein, solids-not-fat, and casein percentages without an effect on the milk yield, were observed.

Incidence of gastro-intestinal strongylosis during monsoon seasons in native goat breeds of Kerala

Gastro-intestinal strongylosis is a major parasitic infection in caprine causing reduced performance, irreversible damage and death, which eventually leads to huge economic loss to the producers. The use of anthelmintics as a simple, effective and quick control method against the parasitism by the farmers has been rampant since decades. But its indiscriminate and undue usage invariably paved way to the development of anthelmintic resistance in parasites. It is high time that control strategies are designed so as to utilise chemotherapy appropriately at the time that coincide with heavy incidence of strongylosis. In the present study, a total of 109 goats, comprising of 58 Malabari and 51 Attappady Black goats from an organised farm were screened for the incidence for strongyle infection. The infection was found to be very high throughout the monsoon seasons in Kerala (June to October) with 94.86 ±1.47 per cent. Majority of the animals exhibited very heavy infection with faecal egg count of (FEC) &gt;1500 during the study period. On coproculture, Haemonchus contortus was found to be the most predominant strongyle followed by Oesophagostomum spp. and Trichostrongylus spp.

Novel g.2055A&gt;C and g.2064T&gt;A Polymorphisms of KISS1 Gene and Its Association with Reproductive Traits in Local Indonesian Goats

Kisspeptins are known as neuropeptides encoded by the KISS1 gene, which potentiates GnRH neuron excitability. Unfortunately, the role of the KISS1 gene in reproductive traits remains unclear in Indonesian native goat breeds. The current study purposed to detect the genetic variation of the KISS1 gene and investigate the association with reproductive traits in goats to acquire marker-assisted selection (MAS) for the breeding program. Further, ninety blood samples from randomly selected animals were used for DNA isolation and SNP genotyping. The blood serum was collected from sixteen treated goat does to assess FSH levels using ELISA method. The differences between studied parameters were determined using independent samples T-test from SAS Software. Two SNPs, g.2055A&amp;gt;C (SNP1) and g.2064T&amp;gt;A (SNP2) were discovered in intron 1 of KISS1 gene in Indonesian native goat breeds. Two genotypes were identified from each SNPs: AA and AC at SNP1 and TT and TA at SNP2. The allele A (0.96) at SNP1 and allele T (0.93) at SNP2 were discovered as dominant alleles in the population. Furthermore, chi-square test showed that both SNPs were under Hardy-Weinberg equilibrium. The variants of KISS1 gene have no effect on litter size (p&amp;gt;0.05). Moreover, AA genotype of SNP1 had a higher FSH level than that observed in AC genotype (p&amp;lt;0.0001), especially in the follicular phase. SNP2 does not correlate with FSH level relatively (p=0.23). Furthermore, using of AA genotype at SNP1 of KISS1 gene as MAS for the breeding selection program could escalate the reproductive traits in goats

Identification of polymorphisms in GDF9 and BMP15 genes in Jamunapari and crossbred goats in Bangladesh.

Polymorphisms in growth differentiation factor 9 (GDF9)andbone morphogenetic protein 15 (BMP15)genes have been found to beassociated with litter size in goats across the globe. Our previous study detected single-nucleotide polymorphisms (SNPs) inGDF9andBMP15genes associated with litter size in Black Bengal, Bangladesh's primary native goat breed. However, Jamunapari and crossbred goats in Bangladesh are yet to be investigated for litter size-associated polymorphisms. In this study, we screened Jamunapari and crossbred (50% Black Bengal × 50% Jamunapari) goats to identify polymorphisms inthe GDF9and BMP15genes and to assess the association between identified SNPs and litter size. The genomic DNA from 100 female goats (50 Jamunapari and 50 crossbred) was used in polymerase chain reactions (PCRs) to amplify exon 2 ofthe GDF9and exon 2 ofthe BMP15genes. PCR products were sequenced employing the BigDye Terminator cycle sequencing protocol to identify SNPs. We used a generalized linear model to perform the association analysis for identified SNPs and litter size. Seven SNPs were identified, of which four, C818CT, G1073A, G1189A, and G1330T, were inthe GDF9gene and three, G616T, G735A, and G811A, were inthe BMP15gene. G735A was a synonymous SNP, whereas the remaining were non-synonymous SNPs. Identified SNP loci in GDF9 were low polymorphic (PIC < 0.25), while loci in BMP15 were moderately polymorphic (PIC ≥ 0.25). The genotypes at the G1330T locus had a significant (p < 0.05) difference in litter size in Jamunapari goats, but no significant difference was observed for all genotypes at other loci. Therefore, the G1330T loci could be useful as a marker in marker-assisted selection for litter size traits in goats of Bangladesh.

Genetic structure of reconstituted native Carpathian goat breed based on information from microsatellite markers

Abstract The aim of the study was to evaluate the genetic structure of the reconstituted native Carpathian goat breed based on information from microsatellite markers. The study analysed of 14 microsatellite markers recommended by the International Society for Animal Genetics (ISAG) for goats individual identification and parentage testing. Blood samples were taken from 249 Carpathian goats from 14 farms. All microsatellite markers deployed in this analysis showed sufficient polymorphism to assess genetic variation in Carpathian goats and the ISAG-recommended panel for goat individual identification and parentage testing is a highly useful one. The present study showed the status of the genetic structure of the reconstituted population of Carpathian goats. Carpathian goats maintained in Poland were characterized by relatively high genetic diversity (the average of alleles per locus was 9.143), high values of heterozygosity and a low level of inbreeding coefficient. The obtained parameters indicate the correctness of the breeding activities carried out within the framework of the programme for the protection of genetic resources and give guidelines for taking further steps related to the breeding of this valuable native breed.

Whole-Genome Sequencing Reveals the Genomic Characteristics and Selection Signatures of Hainan Black Goat.

Goats have become one of the most adaptive and important livestock species distributed in developing countries in recent years. The Hainan Black goat is a native goat breed of the Hainan region that is generally well-liked by the local population and is thus raised in large numbers. However, the genomic diversity and selective signals of the Hainan Black goat have not been clearly elucidated yet. Therefore, in this study, we performed whole-genome resequencing of 16 Hainan Black goats and compared the results with those of 71 goats of 6 other breeds from different geographic regions. Principal component analysis (PCA) and phylogenetic analysis identified seven lineages for all goats. Hainan Black goats showed the most similarity with Leizhou goats and the least similarity with Boer goats. Selective sweep analysis identified candidate genes associated with various functions, including immune resistance to disease (TNFAIP2 (TNF alpha induced protein 2) and EXOC3L4 (exocyst complex component 3 like 4)), melanin biosynthetic process (CDH15 (cadherin 15), ASIP (agouti signaling protein), and PARD3 (par-3 family cell polarity regulator)), and light sensitivity (CNGB3 (cyclic nucleotide gated channel subunit beta 3) and CNBD1 (cyclic nucleotide binding domain containing 1)), underlying strong selection signatures in Hainan Black goats. The melanin biosynthetic process, circadian entrainment, regulation of cyclic adenosine 3,5-monophosphate (cAMP)-mediated signaling, and the Rap-1 signaling pathway were significantly enriched in Hainan Black and Alashan Cashmere goats. This result may be important for understanding each trait. Selection signature analysis revealed candidate single nucleotide polymorphisms (SNPs) and genes correlated with the traits of Hainan Black goats. Collectively, our results provide valuable insights into the genetic basis of specific traits correlated with the Hainan island climate, artificial selection in certain local goat breeds, and the importance of protecting breed resources.