N2O Sink Research Articles

Greenhouse Gas Emissions Characteristics and Driving Factors Analysis in the Eutrophic Saline Lake Daihai Lake

To investigate the greenhouse gas emission characteristics and driving factors of eutrophic saline lakes in northern China, considering Daihai Lake in Inner Mongolia as an example, 10 monitoring sites were selected based on hydrological distribution characteristics in April, July, and October 2023. Using headspace gas chromatography and modeling methods, dissolved concentrations and exchange fluxes of carbon dioxide （CO2）, methane （CH4）, and nitrous oxide （N2O） were determined in the nearshore zone, open lake area, and lake center surface water. During the study period, Daihai Lake exhibited significant seasonal variations in greenhouse gas concentration and flux. The average concentrations of CO2, CH4, and N2O in surface water were （26.52 ± 17.58） μmol·L-1, （282.30 ± 172.30） nmol·L-1, and （9.09 ± 1.64） nmol·L-1, respectively. The average fluxes were （5.29 ± 11.98） mmol·（m2·d）-1, （178.24 ± 63.34） μmol·（m2·d）-1, and （-0.74 ± 1.28） μmol·（m2·d）-1, with cumulative emissions of 50 770.77, 543.52, -4.21 kg·km-2 and a global warming potential （expressed in CO2-equivalent） of 50 770.77, 15 218.49, -1 254.48 kg·km-2. Daihai Lake acted as a source of atmospheric CO2 and CH4 but a sink for N2O during the study period. Correlation and stepwise regression analyses revealed that pH and total dissolved solids （TDS） influenced CO2 concentration and flux, while the factors affecting CH4 were water temperature （WT）, water depth （WD）, wind speed （WS）, oxidation-reduction potential （ORP）, and total nitrogen （TN）. For N2O, the influencing factors were WT, WS, and TN. Additionally, Daihai Lake's eutrophication and salinity characteristics influenced the generation and emission of greenhouse gases. This study provides insights into the greenhouse gas dynamics and environmental factors in eutrophic saline lakes like Daihai Lake.

Substrate Competition of Diazotrophic Nitrous Oxide Assimilation Over Dinitrogen Fixation

AbstractNitrous oxide (N2O) is a potent greenhouse gas and is depleting the stratospheric ozone layer. Diazotrophic N2O assimilation to biomass represents a novel biological N2O consumption pathway in addition to canonical denitrification. Thermodynamically, N2O assimilation is more favorable than dinitrogen (N2) fixation in natural environments, especially under higher N2O concentration and cooler conditions. Via isotopic tracing experiments, N2O assimilation was detected on cultured diazotrophs Crocosphaera and Trichodesmium with specific rates from 1.27 ± 0.16 × 10−4 to 2.00 ± 0.25 × 10−4 hr−1 under elevated [N2O]/[N2] conditions (0.0005–0.01) within 24‐hr incubation. The rates of N2O assimilation during the light and dark periods were statistically insignificant compared with N2 fixation activity. In a eutrophic estuary, N2O assimilation was not detected in the absence of diazotrophic activity. A competitive substrate kinetic model with experimentally calibrated parameters successfully quantified rate ratios of N2O assimilation and N2 fixation in varying substrate concentrations. The low [N2O]/[N2] ratio in natural conditions leads to N2O assimilation rate being <0.1% of N2 fixation rate, rendering negligible impact of N2O assimilation. The model was also used to predict the time required for experimental detection of N2O assimilation in isotopic tracing experiments under varying [N2O]/[N2] ratios. This study enhances the mechanistic understanding of N2O assimilation by diazotrophs, broadening the microbial nitrogen cycle by a potential N2O sink and nitrogen source for production.

Unraveling the genetic potential of nitrous oxide reduction in wastewater treatment: insights from metagenome-assembled genomes.

This study provides critical insights into the genetic diversity of nitrous oxide reductase (nosZ) genes and the microorganisms harboring them in wastewater treatment plants (WWTPs) by exploring 1,083 high-quality metagenome-assembled genomes (MAGs) from 23 Danish full-scale WWTPs. Despite the pivotal role of nosZ-containing organisms, their diversity remains largely unexplored in WWTPs. Our custom pipeline for detecting nosZ provides near-full-length genes with detailed information on secretory pathways and accessory nos genes. Using these genes as templates, we developed taxonomically diverse clade-specific primers that generate nosZ amplicons for phylogenetic annotation and gene-to-MAG linkage. This approach improves detection and expands the discovery of novel sequences, highlighting the prevalence of non-denitrifying N2O reducers and their potential as N2O sinks. These findings have the potential to optimize nitrogen removal processes and mitigate greenhouse gas emissions from WWTPs by fully harnessing the capabilities of the microbial communities.

Diversity and Activity of Soil N2O-Reducing Bacteria Shaped by Urbanization.

Nitrous oxide (N2O) is a potent greenhouse gas with various production pathways. N2O reductase (N2OR) is the primary N2O sink, but the distribution of its gene clades, typically nosZI and atypically nosZII, along urbanization gradients remains poorly understood. Here we sampled soils from forests, parks, and farmland across eight provinces in eastern China, using high-throughput sequencing to distinguish between two N2O-reducing bacteria clades. A deterministic process mainly determined assemblies of the nosZI communities. Homogeneous selection drove nosZI deterministic processes, and both homogeneous and heterogeneous selection influenced nosZII. This suggests nosZII is more sensitive to environmental changes than nosZI, with significant changes in community structure over time or space. Ecosystems with stronger anthropogenic disturbance, such as urban areas, provide diverse ecological niches for N2O-reducing bacteria (especially nosZII) to adapt to environmental fluctuations. Structural equation modeling (SEM) and correlation analyses revealed that pH significantly influences the community composition of both N2O-reducing bacteria clades. This study underscores urbanization's impact on N2O-reducing bacteria in urban soils, highlighting the importance of nosZII and survival strategies. It offers novel insights into the role of atypical denitrifiers among N2O-reducing bacteria, underscoring their potential ecological importance in mitigating N2O emissions from urban soils.

NosZ II/nosZ I ratio regulates the N2O reduction rates in the eutrophic lake sediments

Nitrous oxide (N2O) is a more potent greenhouse gas with an atmospheric lifetime of 121 years, contributing significantly to climate change and stratospheric ozone depletion. Lakes are hotspots for N2O release due to the imbalance between N2O sources and sinks. N2O-reducing bacteria are the only biological means to mitigate N2O emission, yet their roles in lakes are not well studied. This study investigated the potential for N2O reduction, keystones of typical and atypical N2O-reducing bacterial communities, and their correlations with environmental factors in the sediments of Lake Taihu through microcosm experiments, high-throughput sequencing of the nosZ gene, and statistical modeling. The results showed that potential N2O reduction rates in sediments ranged from 13.71 to 76.95 μg N2O g−1 d−1, with lower rates in December compared to March and July. Correlation analysis indicated that the nosZ II/nosZ I ratio and the trophic lake index (TLI) were the primary factors influencing N2O reduction rates and N2O-reducing bacterial community structures. The genera Pseudogulbenkiania and Ardenticatena were identified as the most abundant typical and atypical N2O-reducing bacteria, respectively, and were also recognized as the keystone taxa. Quantitative real-time PCR (qPCR) results revealed that nosZ II was more abundant than nosZ I in the sediments. Partial least squares path modeling (PLS-PM) further demonstrated that atypical N2O-reducing bacteria had significant positive effects on N2O reduction process in the sediments (p < 0.05). Overall, this study highlights the crucial ecological roles of atypical N2O-reducing bacteria in the sediments of the eutrophic lake of Taihu, underscoring their potential in mitigating N2O emissions.

Transport and reactivity of nitrous oxide and methane in two contrasting subterranean estuaries

AbstractContinental groundwaters are commonly enriched in nitrous oxide (N2O) and methane (CH4), which can discharge into the coast. The contribution of this diffuse source to coastal N2O and CH4 emissions largely depends on the biogeochemical processes of coastal aquifer exit zones, known as subterranean estuaries. Here, we study the role of subterranean estuaries in modulating N2O and CH4 exports toward the coast. The two studied subterranean estuaries are located at Panxón and Ladeira beaches (Ría de Vigo, NW Iberian Peninsula) and had opposite oxygenation at their interior. Groundwater‐borne N2O was detected in the oxygenated subterranean estuary of Panxón Beach, although denitrification attenuated N2O before porewater was discharged into the coast. An N2O hotspot was detected at about 50 cm depth in this subterranean estuary, characterized by the presence of nitrate under suboxic conditions. This N2O also seems to be consumed along the flow path before discharging into the coast. The anoxic subterranean estuary of Ladeira Beach completely removed groundwater‐borne N2O. Yet, nitrification within its suboxic upper saline plume produced and exported N2O toward the coast, hiding the role of this subterranean estuary as an N2O sink. The anoxic subterranean estuary exported CH4 toward the coast. This CH4 was not sourced by continental groundwater, hence it was produced in situ fuelled by the accumulation of organic matter within the beach. The suboxic upper saline plume in Ladeira Beach and the oxygenated subterranean estuary of Panxón Beach acted as CH4 sinks.

Effect of microbial growth and electron competition on nitrous oxide source and sink function of hyporheic zones

The hyporheic zones (HZs) are key sites of the production of nitrous oxide (N2O), a potent ozone-depleting greenhouse gas. Denitrification is the primary process of N2O production in HZs, including four reduction steps (NO3−→NO2−→NO→N2O→N2). Electron competition occurs between the four reduction steps and can significantly impact the production of N2O. However, denitrification was typically considered as simplified two step reactions for investigating the release of N2O, neglecting the electron competition among the four-step reactions. Moreover, the N2O production/consumption patterns are regulated by both hydraulic and biogeochemical conditions in HZs. Dynamic microbial growth cannot only mediate the biogeochemical reactions, but also change hydraulic properties spatiotemporally by bioclogging. But microbial growth is rarely considered for investigating N2O dynamics of HZs. To assess these effects on hyporheic N2O dynamics and source-sink function, we establish a novel numerical model of N2O dynamics of HZs, coupling porous flow, reactive transport, electron competition, microbial growth and bioclogging. The results show that the weak electron competitiveness of N2O reductase results in a less allocation of electrons to the N2O reduction process, particularly in situations with limited carbon sources, thus increasing the release of N2O into the rives. Microbial growth significantly influences N2O release from HZs into rivers, increasing by more than two orders of magnitude on average compared to the model neglecting microbial dynamics. In contrast to the classical knowledges that HZs in coarse sediments tending to short residence time cannot act as sources of N2O, dynamic microbial growth obviously increases the potential for N2O release from HZs in coarse sediments to the rivers. The global Monte Carlo regional sensitivity analyses indicate that microbial biomass is the most critical factor determined the hyporheic source-sink function for N2O, followed by carbon oxidation rate and residence time. These are significantly different from previous knowledge that the residence time and oxygen/nitrogen uptake rate are the most sensitive parameters, which may lead to misunderstanding of the key controlling factors of N2O release from HZs. In addition, we propose a new Damköhler number (DaO2∗) of dissolved oxygen by multiplying the classical DaO2 with a dimensionless microbial modification factor for identifying N2O source-sink function of HZs, with DaO2∗ < 1 for N2O sink, while DaO2∗ > 1 for N2O source.

High Abundances and Expression Levels of Atypical, Non‐Denitrifier N2O Reductases Drive Strong Microbial N2O Consumption Rates in a Minimally Impacted Mangrove Stand

AbstractKnowledge of the ecological mechanisms governing N2O cycling in marine sediments lags that of water columns and terrestrial soils, leaving much to be learned about how microbial community dynamics relate to variability in sediment N2O fluxes. The present study assesses these relationships across two distinct environments by focusing on the community structure and activity of N2O reducing microorganisms. The N2O sink capacity of minimally impacted Bermudian mangrove sediments was first estimated using trace‐level microsensors and profile interpretation modeling. Molecular data obtained from these sediments were then compared with those from the Northeast Subarctic Pacific (NESAP) outer continental margin, where previous measurements suggest considerable N2O effluxes. Net N2O uptake was observed for mangrove sediments under ambient and elevated dissolved inorganic nitrogen concentrations (−0.22 ± 0.15 to −0.30 ± 0.26 μmol N2O m−2 d−1), suggesting the microbial potential for N2O consumption exceeded the potential for production via combined nitrification and denitrification. Targeting of bacterial nosZI and nosII gene clusters for quantification using qPCR indicated higher abundance and expression of non‐denitrifier nosZII genes in mangrove sediments demonstrating net N2O uptake. Net N2O production in NESAP sediments was associated with higher abundance and expression of nosZI genes associated with canonical denitrifiers. These results suggest that organisms possessing atypical nosZII genes may act as important N2O scavengers in low‐nitrogen coastal sediments.

Unlocking bacterial potential to reduce farmland N2O emissions

Farmed soils contribute substantially to global warming by emitting N2O (ref. 1), and mitigation has proved difficult2. Several microbial nitrogen transformations produce N2O, but the only biological sink for N2O is the enzyme NosZ, catalysing the reduction of N2O to N2 (ref. 3). Although strengthening the NosZ activity in soils would reduce N2O emissions, such bioengineering of the soil microbiota is considered challenging4,5. However, we have developed a technology to achieve this, using organic waste as a substrate and vector for N2O-respiring bacteria selected for their capacity to thrive in soil6–8. Here we have analysed the biokinetics of N2O reduction by our most promising N2O-respiring bacterium, Cloacibacterium sp. CB-01, its survival in soil and its effect on N2O emissions in field experiments. Fertilization with waste from biogas production, in which CB-01 had grown aerobically to about 6 × 109 cells per millilitre, reduced N2O emissions by 50–95%, depending on soil type. The strong and long-lasting effect of CB-01 is ascribed to its tenacity in soil, rather than its biokinetic parameters, which were inferior to those of other strains of N2O-respiring bacteria. Scaling our data up to the European level, we find that national anthropogenic N2O emissions could be reduced by 5–20%, and more if including other organic wastes. This opens an avenue for cost-effective reduction of N2O emissions for which other mitigation options are lacking at present.

Organic carbon negatively affects the diversity of soil nitrous oxide reducers in Chinese fir plantations at a regional scale

Large-scale planting of Chinese fir (Cunninghamia lanceolata) can bring considerable economic benefits but also seriously alters soil properties, disrupting soil microbial survival patterns and giving rise to distinct microbial communities. Nitrous oxide (N2O) reduction is the sole recognized biological sink for N2O, thereby playing a critical role in forest nitrogen cycling. However, the distribution of N2O reducers in Chinese fir plantation soils and the underlying factors at a regional scale remain unclear. Here, we assessed the abundance, diversity, and community structure of nosZ I-type N2O reducers in soil samples collected from nine state-owned forest farms in Fujian Province, China. The abundance of nosZ I-type reducers exhibited significant variation across sites, with altitude exerting the greatest influence, positively influencing their abundance. Soil organic carbon (SOC) and dissolved organic carbon (DOC) were the strongest predictors of alpha-diversity. Interestingly, SOC and DOC exhibited a negative association with nosZ I-type reducer alpha-diversity. Additionally, DOC played a significant role in influencing community structure. All nosZ I sequences were associated with Alphaprotebacteria and Betaproteobacteria, with Alphaproteobacteria dominating nosZ I-type reducer communities in all soils, accounting for over 90 % of the total sequences. Moreover, the modified stochasticity ratio values exceeded 0.5 at all sampling sites except for one, characterized by the lowest pH and relatively lower nutrient content, indicating the predominance of stochastic processes in community assembly. Taken together, our results provide novel evidence that the augmentation of organic carbon content could potentially reduce diversity and alter the structure of nosZ I-type reducer communities, with potential implications for N2O emissions in Chinese fir plantations.

Aquatic nitrous oxide reductase gene (nosZ) phylogeny and environmental distribution.

Nitrous oxide (N2O) is a potent greenhouse gas and a major cause of ozone depletion. One-third of atmospheric N2O originates in aquatic environments. Reduction of N2O to dinitrogen gas (N2) requires the nitrous oxide reductase enzyme, which is encoded by the gene nosZ. Organisms that contain nosZ are the only known biological sinks of N2O and are found in diverse genera and a wide range of environments. The two clades of nosZ (Clade I and II) contain great diversity, making it challenging to study the population structure and distribution of nosZ containing organisms in the environment. A database of over 11,000 nosZ sequences was compiled from NCBI (representing diverse aquatic environments) and unpublished sequences and metagenomes (primarily from oxygen minimum zones, OMZs, where N2O levels are often elevated). Sequences were clustered into archetypes based on DNA and amino acid sequence identity and their clade, phylogeny, and environmental source were determined. Further analysis of the source and environmental distribution of the sequences showed strong habitat separation between clades and phylogeny. Although there are more Clade I nosZ genes in the compilation, Clade II is more diverse phylogenetically and has a wider distribution across environmental sources. On the other hand, Clade I nosZ genes are predominately found within marine sediment and are primarily from the phylum Pseudonomonadota. The majority of the sequences analyzed from marine OMZs represented distinct phylotypes between different OMZs showing that the nosZ gene displays regional and environmental separation. This study expands the known diversity of nosZ genes and provides a clearer picture of how the clades and phylogeny of nosZ organisms are distributed across diverse environments.

Substantial uptake of nitrous oxide (N2O) by shoots of mature European beech

Similar to soils, tree stems emit and consume nitrous oxide (N2O) from the atmosphere. Although tree leaves dominate tree surface area, they have been completely excluded from field N2O flux measurements and therefore their role in forest N2O exchange remains unknown. We explored the contribution of leaf fluxes to forest N2O exchange. We determined the N2O exchange of mature European beech (Fagus sylvatica) stems and shoots (i.e., terminal branches) and of adjacent forest floor, in a typical temperate upland forest in Germany. The beech stems, and particularly the shoots, acted as net N2O sinks (−0.254 ± 0.827 μg N2O m−2 stem area h−1 and −4.54 ± 1.53 μg N2O m−2 leaf area h−1, respectively), while the forest floor was a net source (2.41 ± 1.08 μg N2O m−2 soil area h−1). The unstudied tree shoots were identified as a significant contributor to the net ecosystem N2O exchange. Moreover, we revealed for the first time that tree leaves act as substantial N2O sinks. Although this is the first study of its kind, it is of global importance for the proper design of future flux studies in forest ecosystems worldwide. Our results demonstrate that excluding tree leaves from forest N2O flux measurements can lead to misinterpretation of tree and forest N2O exchange, and thus global forest greenhouse gas flux inventories.

N2O emission in temperate seagrass meadows: Fluxes, pathway and molecular mechanism

Seagrass meadows act as filters for nitrogen in coastal areas, but whether they are a source or sink for N2O has been still controversy. Additionally, the production pathways of N2O as well as the microbial driving mechanism in seagrass meadows are seldom reported. In this study, the air-sea fluxes, sediment release potential, and production pathway of N2O in a temperate Zostera marina and Z. japonica mixed meadow were investigated by using gas chromatography and 15N isotopic tracing methods. The qPCR and metagenome sequencing were used to compare the difference in functional gene abundance and expression between seagrass vegetated and non-grass sediments. The results showed that the N2O air-sea fluxes in the meadow ranged from −1.97 to −1.77 nmol m⁻2 h⁻1, which was slightly lower in the seagrass region than in the adjacent bare region. Seagrass sediment N2O release potential dramatically increased after warming and nitrogen enrichment treatments. Heterotrophic nitrification was firstly investigated in seagrass meadows, and the process (26.80%–62.41%) and denitrification (37.55%–72.83%) contributed significantly to N2O production in the meadow, affected deeply by sediment organic content, while the contribution of autotrophic nitrification can be neglected. Compared with the bare sediments, the ammonia monooxygenase genes amoA, amoB and amoC, and nitrite oxidoreductase genes nxrA and nxrB, as well as nitrite reductase gene nirS and nitric oxide reductase gene norB were down-regulated, while the nitrous oxide reductase gene nosZ was up-regulated in the seagrass sediments, explaining less N2O emission in seagrass regions from the perspective of molecular. The nosZII-bearing bacteria like Bacteroidia, Polyangia, Anaerolineae, and Verrucomicrobiae could play important roles in N2O reduction in the seagrass meadow. The result is of great significance for highlighting the ability of seagrass meadows to mitigate climate changes.

Long-neglected contribution of nitrification to N2O emissions in the Yellow River

Rivers play a significant role in the global nitrous oxide (N2O) budget. However, the microbial sources and sinks of N2O in river systems are not well understood or quantified, resulting in the prolonged neglect of nitrification. This study investigated the isotopic signatures of N2O, thereby quantifying the microbial source of N2O production and the degree of N2O reduction in the Yellow River. Although denitrification has long been considered to be the dominant pathway of N2O production in rivers, our findings indicated that denitrification only accounted for 18.3% (8.2%–43.0%) of the total contribution to N2O production in the Yellow River, with 50.2%–80.2% being concurrently reduced. The denitrification contribution to N2O production (R2 = 0.44, p < 0.01) and N2O reduction degree (R2 = 0.70, p < 0.01) were positively related to the dissolved organic carbon (DOC) content. Similar to urban rivers and eutrophic lakes, denitrification was the primary process responsible for N2O production (43.0%) in certain reaches with high organic content (DOC = 5.29 mg/L). Nevertheless, the denitrification activity was generally constrained by the availability of electron donors (average DOC = 2.51 mg/L) throughout the Yellow River basin. Consequently, nitrification emerged as the primary contributor in the well-oxygenated Yellow River. Additionally, our findings further distinguished the respective contribution of ammonia-oxidizing bacteria (AOB) and archaea (AOA) to N2O emissions. Although AOB dominated the N2O production in the Yellow River, the AOA specie abundance (AOA/(AOA + AOB)) contributed up to 32.6%, which resulted in 25.6% of the total nitrifier-produced N2O, suggesting a significant occurrence of AOA in the oligotrophic Yellow River. Overall, this study provided a non-invasive approach for quantifying the microbial sources and sinks to N2O emissions, and demonstrated the substantial role of nitrification in the large oligotrophic rivers.

Microbial Sources and Sinks of Nitrous Oxide during Organic Waste Composting.

Composting is widely used for organic waste management and is also a major source of nitrous oxide (N2O) emission. New insight into microbial sources and sinks is essential for process regulation to reduce N2O emission from composting. This study used genome-resolved metagenomics to decipher the genomic structures and physiological behaviors of individual bacteria for N2O sources and sinks during composting. Results showed that several nosZ-lacking denitrifiers in feedstocks drove N2O emission at the beginning of the composting. Such emission became negligible at the thermophilic stage, as high temperatures inhibited all denitrifiers for N2O production except for those containing nirK. The nosZ-lacking denitrifiers were notably enriched to increase N2O production at the cooling stage. Nevertheless, organic biodegradation limited energy availability for chemotaxis and flagellar assembly to restrain nirKS-containing denitrifiers for nitrate reduction toward N2O sources but insignificantly interrupt norBC- and nosZ-containing bacteria (particularly nosZ-containing nondenitrifiers) for N2O sinks by capturing N2O and nitric oxide (NO) for energy production, thereby reducing N2O emission at the mature stage. Furthermore, nosZII-type bacteria included all nosZ-containing nondenitrifiers and dominated N2O sinks. Thus, targeted strategies can be developed to restrict the physiological behaviors of nirKS-containing denitrifiers and expand the taxonomic distribution of nosZ for effective N2O mitigation in composting.

Dry and wet periods determine stem and soil greenhouse gas fluxes in a northern drained peatland forest

Greenhouse gas (GHG) fluxes from peatland soils are relatively well studied, whereas tree stem fluxes have received far less attention. Simultaneous year-long measurements of soil and tree stem GHG fluxes in northern peatland forests are scarce, as previous studies have primarily focused on the growing season. We determined the seasonal dynamics of tree stem and soil CH4, N2O and CO2 fluxes in a hemiboreal drained peatland forest. Gas samples for flux calculations were manually collected from chambers at different heights on Downy Birch (Betula pubescens) and Norway Spruce (Picea abies) trees (November 2020–December 2021) and analysed using gas chromatography. Environmental parameters were measured simultaneously with fluxes and xylem sap flow was recorded during the growing season. Birch stems played a greater role in the annual GHG dynamics than spruce stems. Birch stems were net annual CH4, N2O and CO2 sources, while spruce stems constituted a CH4 and CO2 source but a N2O sink. Soil was a net CO2 and N2O source, but a sink of CH4. Temporal dynamics of stem CH4 and N2O fluxes were driven by isolated emissions' peaks that contributed significantly to net annual fluxes. Stem CO2 efflux followed a seasonal trend coinciding with tree growth phenology. Stem CH4 dynamics were significantly affected by the changes between wetter and drier periods, while N2O was more influenced by short-term changes in soil hydrologic conditions. We showed that CH4 emitted from tree stems during the wetter period can offset nearly half of the soil sink capacity. We presented for the first time the relationship between tree stem GHG fluxes and sap flow in a peatland forest. The net CH4 flux was likely an aggregate of soil-derived and stem-produced CH4. A dominating soil source was more evident for stem N2O fluxes.

Greenhouse gases emissions from aquaculture ponds: Different emission patterns and key microbial processes affected by increased nitrogen loading

Global aquaculture production is expected to rise to meet the growing demand for food worldwide, potentially leading to increased anthropogenic greenhouse gases (GHG) emissions. As the demand for fish protein increases, so will stocking density, feeding amounts, and nitrogen loading in aquaculture ponds. However, the impact of GHG emissions and the underlying microbial processes remain poorly understood. This study investigated the GHG emission characteristics, key microbial processes, and environmental drivers underlying GHG emissions in low and high nitrogen loading aquaculture ponds (LNP and HNP). The N2O flux in HNP (43.1 ± 11.3 μmol m−2 d−1) was significantly higher than in LNP (−11.3 ± 25.1 μmol m−2 d−1), while the dissolved N2O concentration in HNP (52.8 ± 7.1 nmol L−1) was 150 % higher than in LNP (p < 0.01). However, the methane (CH4) and carbon dioxide (CO2) fluxes and concentrations showed no significant differences (p > 0.05). N2O replaced CH4 as the main source of Global Warming Potential in HNP. Pond sediments acted as a sink for N2O but a source for CH4 and CO2. The △N2O/(△N2O + △N2) in HNP (0.015 ± 0.007 %) was 7.7-fold higher than in LNP (0.002 ± 0.001 %) (p < 0.05). The chemical oxygen demand to NO2-N ratio was the most important environmental factor explaining the variability of N2O fluxes. Ammonia-oxidizing bacteria driven nitrification in water was the predominant N2O source, while comammox-driven nitrification and nosZII-driven N2O reduction in water were key processes for reducing N2O emission in LNP but decreased in HNP. The strong CH4 oxidization by Methylocystis and CO2 assimilation by algae resulted in low CH4 emissions and CO2 sink in the aquaculture pond. The Mantel test indicated that HNP increased N2O fluxes mainly through altering functional genes composition in water and sediment. Our findings suggest that there is a significant underestimation of N2O emissions without considering the significantly increased △N2O/(△N2O + △N2) caused by increased nitrogen loading.

Optical Variation and Molecular Transformation of Brown Carbon During Oxidation by NO3• in the Aqueous Phase.

The NO3•-driven nighttime aging of brown carbon (BrC) is known to greatly impact its atmospheric radiative forcing. However, the impact of oxidation by NO3• on the optical properties of BrC in atmospheric waters as well as the associated reaction mechanism remain unclear. In this work, we found that the optical variation of BrC proxies under environmentally relevant NO3• exposure depends strongly on their sources, with enhanced light absorptivity for biomass-burning BrC but bleaching for urban aerosols and humic substances. High-resolution mass spectrometry using FT-ICR MS shows that oxidation by NO3• leads to the formation of light-absorbing species (e.g., nitrated organics) for biomass-burning BrC while destroying electron donors (e.g., phenols) within charge transfer complexes in urban aerosols and humic substances, as evidenced by transient absorption spectroscopy and NaBH4 reduction experiments as well. Moreover, we found that the measured rate constants between NO3• with real BrCs (k = (1.8 ± 0.6) × 107 MC-1s-1, expressed as moles of carbon) are much higher than those of individual model organic carbon (OC), suggesting the reaction with OCs may be a previously ill-quantified important sink of NO3• in atmospheric waters. This work provides insights into the kinetics and molecular transformation of BrC during the oxidation by NO3•, facilitating further evaluation of BrC's climatic effects and atmospheric NO3• levels.

Relationships among the climate-relevant gases during the Southern Ocean bloom season

The ocean plays an essential role in regulating the sources and sinks of climate-relevant gases, like CO2, N2O and dimethyl sulfide (DMS), thus influencing global climate change. Although the Southern Ocean is known to be a strong carbon sink, a significant DMS source and possibly a large source of N2O, our understanding of the interaction among these climate-relevant gases and their potential impacts on climate change is still insufficient in the Southern Ocean. Herein, we analyzed parameters, including surface water pCO2, dissolved inorganic carbon (DIC), alkalinity (TA), DMS and N2O in the water column, collected during the austral summer of 2015–2016 in the 32nd Chinese Antarctic Research Expedition (CHINARE) at the tip of Antarctic Peninsula. A positive correlation between DMS and pCO2 (indicated by deficit of DIC, ∆DIC, refer to values in 100 m) was observed in waters above 75 m, whereas no correlation between N2O saturation anomaly (SA) and DMS, ∆DIC was found. In the area with stable stratification with phytoplankton bloom, significant DMS source and strong CO2 uptake with weak N2O emission were observed. Conversely, strong mixing or upwelling area was shown to be a strong marine CO2 source and significant N2O release with weak DMS source.

Quest for Nitrous Oxide-reducing Bacteria Present in an Anammox Biofilm Fed with Nitrous Oxide.

N2O-reducing bacteria have been examined and harnessed to develop technologies that reduce the emission of N2O, a greenhouse gas produced by biological nitrogen removal. Recent investigations using omics and physiological activity approaches have revealed the ecophysiologies of these bacteria during nitrogen removal. Nevertheless, their involvement in‍ ‍anammox processes remain unclear. Therefore, the present study investigated the identity, genetic potential, and activity‍ ‍of N2O reducers in an anammox reactor. We hypothesized that N2O is limiting for N2O-reducing bacteria‍ ‍and an‍ ‍exogeneous N2O supply enriches as-yet-uncultured N2O-reducing bacteria. We conducted a 1200-day incubation of N2O-reducing bacteria in an anammox consortium using gas-permeable membrane biofilm reactors (MBfRs), which efficiently supply N2O in a bubbleless form directly to a biofilm grown on a gas-permeable membrane. A 15N tracer test indicated that the supply of N2O resulted in an enriched biomass with a higher N2O sink potential. Quantitative PCR and 16S rRNA amplicon sequencing revealed Clade II nosZ type-carrying N2O-reducing bacteria as protagonists of N2O sinks. Shotgun metagenomics showed the genetic potentials of the predominant Clade II nosZ-carrying bacteria, Anaerolineae and Ignavibacteria in MBfRs. Gemmatimonadota and non-anammox Planctomycetota increased their abundance in MBfRs despite their overall lower abundance. The implication of N2O as an inhibitory compound scavenging vitamin B12, which is essential for the synthesis of methionine, suggested its limited suppressive effect on the growth of B12-dependent bacteria, including N2O reducers. We identified Dehalococcoidia and Clostridia as predominant N2O sinks in an anammox consortium fed exogenous N2O because of the higher metabolic potential of vitamin B12-dependent biosynthesis.