Since 2014, abnormal mussel mortality (AMM) outbreaks have occurred along the French Atlantic coasts and mortality rates differed among years and sites (30–100%). Still, the etiology of the AMM is undefined. Our study explores the resistance of two mussel species (Mytilus edulis and Mytilus galloprovincialis) and natural hybrids (NH) cultivated in France to AMM. One hundred mussel families were produced using six wild mussel populations in January/February 2017. Mussels were tested in two sites, La Floride (LF) and Maison Blanche (MB), in October 2017, and their mortality/growth was recorded until June 2018. AMM was observed at MB during spring 2018, and reached 70%, 43%, and 63%, for M. edulis, M. galloprovincialis, and NH, respectively, at endpoint. In contrast, mortality was low in LF, reaching 11%, 30%, and 22%, respectively. Heritability for mortality was low to moderate in both sites ranging from 0.12 to 0.37 with higher values in M. edulis, intermediate for NH, and the lowest for M. galloprovincialis. A significant genotype-by-environment interaction was found for mortality between sites, with low genetic correlations not significantantly different from zero (−0.05 to 0.43). In July 2018, mussel families were evaluated under experimental infection using a pathogenic strain of Vibrio splendidus isolated during AMM in 2014. The mean mortality after 72 h post-injection was 53%, 22%, and 31% for M. edulis, M. galloprovincialis, and NH, respectively. The lowest heritability estimates were obtained for NH (0.21) and the highest for M. galloprovincialis (0.41), and the genetic correlation between AMM in MB and experimental infection was not significantly different from 0, suggesting that this Vibrio strain, is not the major cause of AMM outbreak observed in MB in 2018. Finally, significant genetic variation was observed for growth traits with mostly high heritability (> 0.44) for both species. Interestingly, genetic correlation between mortality and growth was weak and non-significant from zero.
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