Oil sources and accumulations in complex oil reservoirs of superimposed basins are difficult to identify and recover because of multiple kitchens and multistage charging processes. Constraining the oil sources and characterizing their accumulation patterns is a critical challenge. In this study, 46 crude oils from the Upper Wuerhe Formation, a widely distributed oil reservoir in the Mahu Sag of the Junggar Basin, NW China, are geochemically characterized to assess their sources and spatial distribution. These oils are divided into four groups: group I oils (characterized by high β-carotane and gammacerane concentrations, low C21/C23 and (C19 + C20)/C23 tricyclic terpane ratios, and low Pr/Ph ratios); group II oils (characterized by low β-carotane and gammacerane concentrations, high C21/C23 and (C19 + C20)/C23 tricyclic terpane ratios, and moderate Pr/Ph ratios); group III oils (very high Pr/Ph ratio (>3), the lowest β-carotane and gammacerane concentrations, and low tricyclic terpane concentration, but relatively high C19 and C20 tricyclic terpane abundance); and group IV oils (refered to here as geochemically hybrid, and inferred to be sourced from mixed P1f and C/P1j source rocks). The integration of oil-source correlation and geological framework indicates that oils generated from multiple kitchens are more likely to be near-sourced accumulations, providing a plausible example for oil accumulation in a complex oil reservoir of superimposed basin with several sets of kitchens and multistage oil charging history. The results show that multisource and multistage hydrocarbon accumulation is a common characteristic of prolific superimposed basins. The oil accumulation pattern must be established by carefully characterizing sources and charging processes to reduce the risk of exploration activities.