A Multi species Probiotics (MSP) of calf gut origin was encapsulated either with chitosan (ECMSP) or without chitosan (EMSP). Further, the probiotic was encapsulated and lyophilized (ELMSP) using three types of cryoprotectant solutions sucrose (ELMSP(S)), skim milk (ELMSP(SM)) and sucrose + skim milk combination (ELMSP (SSM)). The encapsulation yield was good and ranged from 75 % to 80 % for MSP products. These MSP products were stored at refrigeration temperature (4 °C), deep freeze and room temperature for 12 weeks. The shelf life (mean CFU) of encapsulated microcapsules was significantly better (P < 0.001) at the refrigeration temperature (9.44 Log10 CFU/g) than deep freeze (7.42 Log10 CFU/g) and room temperature (6.67 Log10 CFU/g). At the end of the 12 weeks storage period, EMSP maintained 25.1 %, 49.6 % and 32.6 % viable counts at room temperature, refrigeration and deep freeze condition respectively. For the lyophilized-encapsulated MSP, the mean probiotic counts of ELMSP(S) and ELMSP (SSM) were significantly (P < 0.001) higher (9.62 Log10 CFU/g) than those of ELMSP(SM) ((9.36 Log10 CFU/g) at room temperature. At refrigeration temperature, the mean probiotic counts for ELMSP (SSM. (10.1 Log10 CFU/g)) were significantly higher (P < 0.001) than ELMSP(S, (9.97 Log10 CFU/g) and ELMSP(SM, (9.86 Log10 CFU/g). Further, a 12 weeks storage study for ELMSP (SSM) showed that the microcapsules stored at refrigeration temperature (4°C) showed only 6.4 % drop in viability which was significantly lower (P < 0.001) than that of room temperature showing 15.3 % drop and deep freeze storage with 17.1 % drop in viability. It was appreciable that even at room temperature; there was only one log drop in the viability of MSP showing that it can be comfortably stored at room temperature for longer periods at field level.