The Jingbai pear is one of the best pear species in China with high quality and nutrition values which are closely linked to its geographical origin. With the purpose of discriminating the PGI Mentougou Jingbai pear from three other producing regions, the stable isotope ratios and elemental profiles of the pears (n = 52) and the corresponding soils and groundwater were determined using isotope ratio mass spectrometry (IRMS) and inductively coupled plasma mass spectrometry (ICP-MS), respectively. The results revealed that δ15N, δ18OJ, and Li were significantly different (p < 0.05) in samples from different regions, which indicated their potential to be used in the geographical origin classification of the Jingbai pear. The nitrogen isotopic values of the pear pulp were positively correlated with the δ15N value and nitrogen content of the corresponding soils, whilst the B, Na, K, Cr, and Cd contents of the pear pulps were positively correlated with their corresponding soils. Orthogonal partial least squares discriminant analysis (OPLS-DA) was performed in combination with analysis of the stable isotopes and elemental profiles, making it possible to distinguish the cultivation regions from each other with a high prediction accuracy (a correct classification rate of 92.3%). The results of this study highlight the potential of stable isotope ratios and elemental profiles to trace the geographical origin of pears at a small spatial scale.