The development of advanced luminescent materials is important for anti-counterfeiting applications, but still faces many challenges. In this study, Na3GaF6:Tm3+,Yb3+@SiO2 core@shell type nanocrystals with cryolite structure were synthesized for the first time by co-precipitation method. By modulating the excitation mode and Tm3+/Yb3+ doping ratio, the Na3GaF6:Tm3+,Yb3+@SiO2 nanocrystals exhibits multicolor up-conversion emission. Multicolor anti-counterfeiting ink was configured with up-conversion nanocrystals, and a variety of multi-colour anti-counterfeiting patterns were printed using screen printing technology. Additionally, multi-colour fluorescent barcodes are combined with binary coding technology to achieve encryption of anti-counterfeiting information. This work not only discovered an excellent up-conversion nanocrystals (Na3GaF6:Tm3+,Yb3+@SiO2) suitable for anti-counterfeiting applications, but also provided an effective encryption strategy for anti-counterfeiting information.