This paper introduces a novel construction method for Type-II Z complementary code set (ZCCS) based on the Kronecker product between complete complementary code and mutually orthogonal sequences. Type-II ZCCS offer significant advantages over their Type-I counterparts, boasting larger zero correlation zone (ZCZ) width and a larger number of codes with identical constituent sequences and lengths. Moreover, we propose a strategy to reduce column peak-to-mean envelope power ratio (PMEPR) to a low values upto smaller than 2. This construction framework also facilitates the creation of Z complementary pairs (ZCPs) with flexible parameters. Furthermore, we present a Type-II ZCCS based multi-carrier code division multiple access (MC-CDMA) system and conduct performance comparisons against existing Type-I ZCCS based counterparts. Simulation results demonstrate the superiority of the proposed system, showcasing improved reliability and efficiency. Additionally, we establish a novel relationship among set size, code size, sequence length, and ZCZ width for Type-II ZCCS.