Airborne LiDAR bathymetry (ALB) system is an attractive and efficient method for nearshore bathymetry and underwater topography mapping. To ensure and improve the measurement accuracy and reliability in various water environments, different receivers using a segmented field of view (FOV) have been designed and are implemented in ALB. These are used to obtain various echo data of multiple channels and perform bathymetry at various water depths. However, in echo waveform processing, detailed information about the water body described by the different echo waveforms is lacking, making it difficult to overcome severe waveform superposition in extremely shallow areas or to separate the weak echo of the water bottom from the noise in extremely deep areas. Therefore, we employed a novel method of multi-channel waveform fusion bathymetry (MWFB) to achieve information complementarity, gain multi-channel waveforms, and detect the robustness of water and bottom echo signals. This method uses an adaptive signal waveform extraction of a multichannel fusion mechanism to eliminate systematic and random noise, and the waveform curvature is used to reconstruct the energy–waveform curves. Iterative decomposition based on waveform curvature and energy curves was conducted to improve the correctness of waveform decomposition and the reliability of waveform components. Furthermore, the water surface and bottom peaks were detected based on the multichannel waveform curvature, which enabled acquisition of the accurate temporal positions of the peaks and achieve high-accuracy bathymetry. According to the experimental results and a comparison with reference datasets, the highest bathymetric accuracy of the MWFB method reached an RMSE of 0.22. For the different study areas, the bathymetric accuracy of the slope reached 95%, 92%, and 97% at Ganquan Island, Lingyang Reef, and Bei Island, respectively. Furthermore, the bathymetric point numbers were effectively increased and bathymetric accuracy was also improved in shallow and deep water, which illustrates the superior bathymetric performance of the MWFB method and its ability to provide a high-efficiency waveform dataset through multi-channel data fusion. The novel LiDAR bathymetric method proposed in this study can effectively achieve high-accuracy nearshore bathymetry and seafloor topographical mapping.
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