The paper addressed shortcoming with highly precise and selective 3D structural analysis of native cyclodextrins in mixture using ions observable at low m/z–region by ESI– and APCI–mass spectrometry. Because of, the quantitative and structural analyses of CDs, in general, are vexed by a set of complications. The study outlines our own stochastic dynamic approaches to the latter issues based on new model relations, quantifing the measurable MS outcome intensity. They introduce the so–called stochastic dynamic mass spectrometric diffusion “DSD” parameter, exhibiting high accuracy, precision, sensitivity and selectivity, respectively. It is linearly connected with the so–called quantum chemical diffusion parameter “DQC” according to Arrhenius’s theory. The most important upshot is that statistical parameters r = 0.99639–0.99981 has been obtained correlating between DSD and DQC parameters. Therefore, we determine high accurately 3D molecular and electronic structures of analytes by mass spectrometry. Fragment peaks at m/z 313, 279, 272, 252, 231, 214, 198, 171, 158 and 141 are examined. Mixtures of CDs and monomeric and acyclic oligomer carbohydrates glucose (1), sucrose (2), raffinose (3), melezitose (4) and cellotriose (5) are also studied. Our method is able to account precisely for the effect of the temperature under ESI– and APCI–MS conditions, as well. Correlative analysess between DSD parameters of ESI– and APCI–MS measurements under different temperatures is also shown. Chemometric tests are used. Another important results and conclusions, among others, to draw from this research are: (i) excellent linear correlation between DSD and DQC parameters of r = 0.99636 is found looking at common ions at m/z 141, 158 and 171, belonging to 2-formyl-3,4-dihydroxy-pyranylium, 4,5,6-trihydroxy-6H-pyran-2-carbaldehyde and 3,4,5-trihydroxy-6-oxo-6H-pyran-2-ylmethylidyne-oxonium ions. Thus, we distinguish precisely between the last structure and 3-formyl-4,5-dihydroxy-2,7-dioxa-8-oxonia-bicyclo[4.2.0]octa-1(8),3,5-triene cation. In the case of ion at m/z 141 subtle electronic effects are distinguished between the mentioned structure and the charged 3,4-dihydroxy-6H-pyran-2-carbaldehyde one. The method determines precisely very similar structurally poly–OH–substituted derivatives. Because of, (ii) absolute reproducibility (r = 1) of DSD parameters of ESI–MS spectra is obtained studying the shown in point (i) MS peaks of β-CD between jth and jth numbers of experiments. The statistical equation is DiSD = (0.51 ± 3.1.10−5) × DjSD; (iii) the APCI– and ESI–MS provide identical results studying common MS ions of CDs and the correlation between DAPCISD and DESISD parameters excludes from error, due to, experiment; and (iv) The correlation between theory and experiment accounting for the factor temperature within our model equations shows r = 0.9828 looking at the MS peaks at m/z 313 280, 279, 274 and 252, respectively. The effect of the temperature under both ESI– and APCI–MS conditions on the 3D molecular and electronic structures of CDs is precisely studied, respectively.
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