MR Acquisition Research Articles

Quantified pH detection with hyperpolarized 13C-Bicarbonate

Event Abstract Back to Event Quantified pH detection with hyperpolarized 13C-Bicarbonate Johannes Scholz1, 2*, Martin A. Janich2, Angela M. Otto1, Franz Schilling1, Axel Haase1 and Marion I. Menzel2 1 Technische Universität München, Physics, Germany 2 GE Global Research Center, Germany Background and aim. pH plays a crucial role in several diseases, such as cancer, hypoxia, inflammation etc., and it is therefore desirable to detect pH in vivo. Ideally, the detection should be noninvasive and spatially localized. Despite the medical impact, a clinical tool for pH mapping is not yet available. Different approaches in pH detection were made in NMR e.g. with 31P and CEST.[1] A promising candidate to achieve pH mapping in vivo is 13C metabolic magnetic resonance (13CMMR). This technique enhances the signal of 13C-labeled bicarbonate using dissolution dynamic nuclear polarization (DNP) and then probes the pH by measuring the ratio of 13C bicarbonate and 113CO2 [2]. Methods. Hyperpolarization is achieved using dissolution DNP Hypersense polarizer. The MR acquisition is performed on pH phantoms and mammary carcinoma cell spheroids (MCF-7) using a 3T MR system (GE Signa HDx) and a 14T Bruker spectrometer. Relaxation time analysis was additionally performed with a 1T Bruker Minispec mq40 NMR analyzer. Results. In vitro tests using hyperpolarized sodium bicarbonate and phosphate buffers and pH-phantoms showed good correlation between the derived pH value and the reference pH (+/- 0.03) obtained with a pH electrode. An analysis of the signal dynamics revealed that the correct bicarbonate to CO2 signal ratio is established after 40 seconds without adding carbonic anhydrases. In tumor cell systems (MCF-7 spheroids), T1 times of bicarbonate and CO2 were determined for different field strengths (1T, 3T, 14T) and different pH values in the biological range (6-8). Comparison of the values achieved with and without tumor spheroids show the impact of the spheroids on the hyperpolarized signal. Acknowledgements This research was partly funded by BMBF grant 01EZ1114A.

An experimental model to investigate the targeting accuracy of MR-guided focused ultrasound ablation in liver

BackgroundMagnetic Resonance-guided High Intensity Focused Ultrasound (MRgHIFU) is a hybrid technology that aims to offer non-invasive thermal ablation of targeted tumors or other pathological tissues. Acoustic aberrations and non-linear wave propagating effects may shift the focal point significantly away from the prescribed (or, theoretical) position. It is therefore mandatory to evaluate the spatial accuracy of ablation for a given HIFU protocol and/or device. We describe here a method for producing a user-defined ballistic target as an absolute reference marker for MRgHIFU ablations.MethodsThe investigated method is based on trapping a mixture of MR contrast agent and histology stain using radiofrequency (RF) ablation causing cell death and coagulation. A dedicated RF-electrode was used for the marker fixation as follows: a RF coagulation (4 W, 15 seconds) and injection of the mixture followed by a second RF coagulation. As a result, the contrast agent/stain is encapsulated in the intercellular space. Ultrasonography imaging was performed during the procedure, while high resolution T1w 3D VIBE MR acquisition was used right after to identify the position of the ballistic marker and hence the target tissue. For some cases, after the marker fixation procedure, HIFU volumetric ablations were produced by a phased-array HIFU platform. First ex vivo experiments were followed by in vivo investigation on four rabbits in thigh muscle and six pigs in liver, with follow-up at Day 7.ResultsAt the end of the procedure, no ultrasound indication of the marker’s presence could be observed, while it was clearly visible under MR and could be conveniently used to prescribe the HIFU ablation, centered on the so-created target. The marker was identified at Day 7 after treatment, immediately after animal sacrifice, after 3 weeks of post-mortem formalin fixation and during histology analysis. Its size ranged between 2.5 and 4 mm.ConclusionsExperimental validation of this new ballistic marker method was performed for liver MRgHIFU ablation, free of any side effects (e.g. no edema around the marker, no infection, no bleeding). The study suggests that the absolute reference marker had ultrasound conspicuity below the detection threshold, was irreversible, MR-compatible and MR-detectable, while also being a well-established histology staining technique.

Prototype Design and Phantom Evaluation of a Device for Co-registered MRI/TRUS Imaging of the Prostate.

Magnetic Resonance Imaging (MRI) and transrectal Ultrasound (TRUS) are both used in imaging interventions in men suspected of having and with prostate cancer for diagnosis as well as treatment. Due to the widespread availability and ease of use of TRUS, it is widely acknowledged that availability of spatially registered MRI/TRUS data could provide the optimal combination for characterization of prostate tissue and interventional guidance. To provide such spatially aligned data, we propose a device to support co-registered acquisition of MRI and TRUS data while maintaining a stable configuration (shape) of the prostate. We present the design and evaluation of a custom sleeve that can be introduced transrectally, and can accommodate both TRUS and endorectal MRI probes. Our experiments on a phantom have demonstrated that imaging with this sleeve did not compromise differentiation of internal structures and did not affect the quality of the MR acquisition. Reduction of the signal and contrast were however observed and quantified in the TRUS data. Further evaluation and modification of the device necessary for possible patient studies are discussed.

Fiberfox: Facilitating the creation of realistic white matter software phantoms

Phantom-based validation of diffusion-weighted image processing techniques is an important key to innovation in the field and is widely used. Openly available and user friendly tools for the flexible generation of tailor-made datasets for the specific tasks at hand can greatly facilitate the work of researchers around the world. We present an open-source framework, Fiberfox, that enables (1) the intuitive definition of arbitrary artificial white matter fiber tracts, (2) signal generation from those fibers by means of the most recent multi-compartment modeling techniques, and (3) simulation of the actual MR acquisition that allows for the introduction of realistic MRI-related effects into the final image. We show that real acquisitions can be closely approximated by simulating the acquisition of the well-known FiberCup phantom. We further demonstrate the advantages of our framework by evaluating the effects of imaging artifacts and acquisition settings on the outcome of 12 tractography algorithms. Our findings suggest that experiments on a realistic software phantom might change the conclusions drawn from earlier hardware phantom experiments. Fiberfox may find application in validating and further developing methods such as tractography, super-resolution, diffusion modeling or artifact correction.

Real-time method for motion-compensated MR thermometry and MRgHIFU treatment in abdominal organs

Magnetic resonance-guided high-intensity focused ultrasound is considered to be a promising treatment for localized cancer in abdominal organs such as liver, pancreas, or kidney. Abdominal motion, anatomical arrangement, and required sustained sonication are the main challenges. MR acquisition consisted of thermometry performed with segmented gradient-recalled echo echo-planar imaging, and a segment-based one-dimensional MR navigator parallel to the main axis of motion to track the organ motion. This tracking information was used in real-time for: (i) prospective motion correction of MR thermometry and (ii) HIFU focal point position lock-on target. Ex vivo experiments were performed on a sheep liver and a turkey pectoral muscle using a motion demonstrator, while in vivo experiments were conducted on two sheep liver. Prospective motion correction of MR thermometry yielded good signal-to-noise ratio (range, 25 to 35) and low geometric distortion due to the use of segmented EPI. HIFU focal point lock-on target yielded isotropic in-plane thermal build-up. The feasibility of in vivo intercostal liver treatment was demonstrated in sheep. The presented method demonstrated in moving phantoms and breathing sheep accurate motion-compensated MR thermometry and precise HIFU focal point lock-on target using only real-time pencil-beam navigator tracking information, making it applicable without any pretreatment data acquisition or organ motion modeling.

Evaluation of cerebral aneurysm wall thickness in experimental aneurysms: Comparison of 3T-MR imaging with direct microscopic measurements

Thin aneurysm wall thickness (AWT) is thought to portend an elevated risk of intracranial aneurysm rupture. Magnetic resonance imaging (MRI) is biased by AWT overestimations. Previously, this suspected bias has been qualitatively described but never quantified. We aimed to quantify the overestimation of AWT by MRI when compared to the gold standard of AWT as measured by light microscopy of fresh aneurysm specimens (without any embedding procedure). This analysis should help to define the clinical potential of MRI estimates of AWT. 3-Tesla (3T) MRI (contrast-enhanced T1 Flash sequences; resolution: 0.4 x 0.4 x 1.5 mm(3)) was performed in 13 experimental aneurysms. After MR acquisition, the aneurysms were retrieved, longitudinally sectioned and calibrated micrographs were obtained immediately. AWT at the dome, AWT at the neck and parent vessel wall thickness (PVT) were measured on precisely correlated MR-images and histologic micrographs by blinded independent investigators. Parameters were statistically compared (Wilcoxon test, Spearman's correlation). AWT was assessed and reliably measured using MRI. Interobserver variability was not significant for either method. MR overestimation was only significant below the image resolution threshold: AWT at the dome (0.24 ± 0.06 mm vs. MR 0.30 ± 0.08 mm; p = 0.0078; R = 0.6125), AWT at the neck (0.25 ± 0.07 mm vs. MR 0.29 ± 0.07 mm; p = 0.0469; R = 0.7451), PVT (0.46 ± 0.06 mm vs. MR 0.48 ± 0.06 mm; p = 0.5; R = 0.8568). In this experimental setting, MR overestimations were minimal (mean 0.02 mm) above the image resolution threshold. When AWT is classified in ranges defined by the MR resolution threshold, clinical usage may be beneficial. Further quantitative and comparative experimental and human studies are warranted to confirm these findings.

Framework for the construction of a Monte Carlo simulated brain PET–MR image database

Simultaneous PET–MR acquisition reduces the possibility of registration mismatch between the two modalities. This facilitates the application of techniques, either during reconstruction or post-reconstruction, that aim to improve the PET resolution by utilising structural information provided by MR. However, in order to validate such methods for brain PET–MR studies it is desirable to evaluate the performance using data where the ground truth is known. In this work, we present a framework for the production of datasets where simulations of both the PET and MR, based on real data, are generated such that reconstruction and post-reconstruction approaches can be fairly compared.

Comparison of first pass bolus AIFs extracted from sequential 18F-FDG PET and DSC-MRI of mice

Accurate kinetic modelling of in vivo physiological function using positron emission tomography (PET) requires determination of the tracer time–activity curve in plasma, known as the arterial input function (AIF). The AIF is usually determined by invasive blood sampling methods, which are prohibitive in murine studies due to low total blood volumes. Extracting AIFs from PET images is also challenging due to large partial volume effects (PVE). We hypothesise that in combined PET with magnetic resonance imaging (PET/MR), a co-injected bolus of MR contrast agent and PET ligand can be tracked using fast MR acquisitions. This protocol would allow extraction of a MR AIF from MR contrast agent concentration–time curves, at higher spatial and temporal resolution than an image-derived PET AIF. A conversion factor could then be applied to the MR AIF for use in PET kinetic analysis. This work has compared AIFs obtained from sequential DSC-MRI and PET with separate injections of gadolinium contrast agent and 18F-FDG respectively to ascertain the technique′s validity. An automated voxel selection algorithm was employed to improve MR AIF reproducibility. We found that MR and PET AIFs displayed similar character in the first pass, confirmed by gamma variate fits (p<0.02). MR AIFs displayed reduced PVE compared to PET AIFs, indicating their potential use in PET/MR studies.

Detection of small (≤2 cm) HCC in cirrhotic patients: added value of diffusion MR-imaging

To evaluate the usefulness of the diffusion-weighted sequence in the detection of small (≤2 cm) hepatocellular carcinoma (HCC) in patients with cirrhosis. Seventy cirrhotic patients with 93 HCCs underwent MR-Imaging at 1.5 T. MR acquisitions comprised unenhanced T1- and T2-weighted images and post-contrast Gd-BOPTA-enhanced T1W GRE-3D images acquired after approximately 25, 60, 180 s (dynamic phases) and 90 min (hepatobiliary phase). DWI was performed by a SSEPI sequence (b values 0, 50, 400, 800 s/mm(2)). Quantitative analysis was performed to establish significant difference of ADC values of benign lesions compared with that of HCC. Sensitivity, specificity, positive and negative predictive values and diagnostic accuracy of two different protocols with and without diffusion MRI sequence were also calculated and compared each other. A good inverse correlation was found between reference standard and ADC values (ρ = -0.688). The mean ADC value of HCC was significantly lower than the mean value of benign focal liver lesions (p < 0.0001). No significant difference was reported in term of sensitivity, specificity, PPV, NPV and diagnostic accuracy between the two datasets. A trend to a better sensitivity was found when DWI images were considered. The adjunction of DWI does not significantly improve the diagnostic accuracy in the detection of small HCC.

Non-ECG-gated unenhanced MRA of the carotids: Optimization and clinical feasibility

To optimise and assess the clinical feasibility of a carotid non-ECG-gated unenhanced MRA sequence. Sixteen healthy volunteers and 11 patients presenting with internal carotid artery (ICA) disease underwent large field-of-view balanced steady-state free precession (bSSFP) unenhanced MRA at 3T. Sampling schemes acquiring the k-space centre either early (kCE) or late (kCL) in the acquisition window were evaluated. Signal and image quality was scored in comparison to ECG-gated kCE unenhanced MRA and TOF. For patients, computed tomography angiography was used as the reference. In volunteers, kCE sampling yielded higher image quality than kCL and TOF, with fewer flow artefacts and improved signal homogeneity. kCE unenhanced MRA image quality was higher without ECG-gating. Arterial signal and artery/vein contrast were higher with both bSSFP sampling schemes than with TOF. The kCE sequence allowed correct quantification of ten significant stenoses, and it facilitated the identification of an infrapetrous dysplasia, which was outside of the TOF imaging coverage. Non-ECG-gated bSSFP carotid imaging offers high-quality images and is a promising sequence for carotid disease diagnosis in a short acquisition time with high spatial resolution and a large field of view. • Non-ECG-gated unenhanced bSSFP MRA offers high-quality imaging of the carotid arteries. • Sequences using early acquisition of the k-space centre achieve higher image quality. • Non-ECG-gated unenhanced bSSFP MRA allows quantification of significant carotid stenosis. • Short MR acquisition times and ungated sequences are helpful in clinical practice. • High 3D spatial resolution and a large field of view improve diagnostic performance.

WE‐C‐116‐05: Residual Respiratory Motion Management Within a Gating Window Using Quasi‐Breath‐Hold (QBH) Biofeedback

Purpose: The aim of the project is to test the hypothesis that quasi‐breath‐hold (QBH) biofeedback improves the residual respiratory motion management within a gating window, reducing respiratory motion artifacts in gated 3D thoracic MR images. Methods: A QBH biofeedback system has been employed with gated 3D thoracic MRI acquisitions. The QBH biofeedback system utilized (1) the external marker position on the abdomen using an RPM system (Real‐time Position Management, Varian) to audio‐visually guide a human subject for 2s breath‐hold at 90% exhalation position in each respiratory cycle and (2) the gated T2 weighted SPACE MR pulse sequence of 3 T Siemens MRI for 3D thoracic imaging. The improvement in the upper liver breath‐hold motion reproducibility within the gating window using the QBH biofeedback system has been assessed for a group of volunteers. Each subject underwent two imaging sessions for the assessments of the residual respiratory motion management within the gating window and respiratory motion artifacts in 3D thoracic MRI both with/without QBH biofeedback. Results: The residual upper liver motion within the gating window during MR acquisitions (∼6 minutes) has been considerably reduced using QBH biofeedback, resulting in the reduction of respiratory motion artifacts in lungs and liver of 3D thoracic MR images. Additionally, average RMSE (root mean square error) of abdomen displacement obtained from the RPM has been reduced from 2.3mm of free breathing to 0.8mm of QBH biofeedback breathing: 65% of average displacement error reduction with QBH biofeedback. Conclusion: The study demonstrated the improvement of the upper liver breath‐hold motion reproducibility using QBH biofeedback during 3D thoracic MR imaging. This system can provide clinically applicable motion management of the internal anatomy for gated radiotherapy.

OP0233 QCT indicates locally increased bone mineral density (BMD) in regions of bone marrow lesions (BML) segmented on MR images

BackgroundWhile the association of BMLs with joint space narrowing and pain in knee OA is verified, the correlation between BMLs and local BMD is a topic of major interest with...

WE-G-WAB-04: Ultra-Fast Dynamic MRI for Lung Tumor Tracking Based On Compressed Sensing and Low-Rank Decomposition in the Spatial-Temporal Domain

Purpose: Dynamic MRI is an attractive tool for internal organ motion monitoring but its speed is yet to be improved for real time 3D imaging. The purpose of the study is to accelerate the imaging acquisition using a hybrid compressed-sensing and low rank decomposition method (k-t SLR) exploiting data sparsity in the spatial-temporal domain. Methods: Six retrospective lung cancer patients were included in the study. For each subject, 120 continuously dynamic 2D MR images were acquired using a fast steady state precession imaging sequence. To test the feasibility of accelerated MR acquisition, fully sampled k-space data were down-sampled by 5–20 folds before reconstruction. The under-sampled low rank spatial-temporal matrix was recovered by a k-t SLR method computing the matrix of minimum nuclear norm that fits the data. The k-t SLR results were compared against conventional total variation (TV) reconstruction of individual dynamic MR frames. Results: High imaging fidelity and low noise levels were achieved with the k-t SLR method even at the most aggressive down-sampling ratio while TV reconstruction showed substantial loss of details and subsequently greater tracking errors. The k-t SLR method resulted in an average normalized mean square error less than 0.05 as opposed to 0.23 by using the TV reconstruction on individual frames. In addition to the high correlation coefficients (>0.90) in the tumor trajectories automatically tracked from the original images and the k-t SLR reconstructed images, less than 6% points showed tracking errors greater than 1 mm with 20 fold down-sampling, as opposed to the lower correlation coefficient (0.87) and 15% tracking error from using TV alone with 10 fold data down-sampling. Conclusion: We have demonstrated the potential to significantly reduce the amount data samples required for lung MR image reconstruction in the radiotherapy context where long imaging acquisition of a repetitive anatomic process is performed. The study is supported in part by NIH 1R21CA144063 and R21CA161670

Functional localization of the auditory thalamus in individual human subjects

Here we describe an easily implemented protocol based on sparse MR acquisition and a scrambled 'music' auditory stimulus that allows for reliable measurement of functional activity within the medial geniculate body (MGB, the primary auditory thalamic nucleus) in individual subjects. We find that our method is equally accurate and reliable as previously developed structural methods, and offers significantly more accuracy in identifying the MGB than group based methods. We also find that lateralization and binaural summation within the MGB resemble those found in the auditory cortex.

Mammary Cancer Bone Metastasis Follow-up Using Multimodal Small-Animal MR and PET Imaging

Despite tremendous progress in the management of breast cancer, the survival rate of this disease is still correlated with the development of metastases-most notably, those of the bone. Diagnosis of bone metastasis requires a combination of multiple imaging modalities. MR imaging remains the best modality for soft-tissue visualization, allowing for the distinction between benign and malignant lesions in many cases. On the other hand, PET imaging is frequently more specific at detecting bone metastasis by measuring the accumulation of radiotracers, such as (18)F-sodium fluoride ((18)F-NaF) and (18)F-FDG. Thus, the main purpose of this study was to longitudinally monitor bone tumor progression using PET/MR image coregistration to improve noninvasive imaging-assisted diagnoses. After surgical implantation of mammary MRMT-1 cells in a rat femur, we performed minimally invasive imaging procedures at different time points throughout tumor development. The procedure consisted of sequential coregistered MR and PET image acquisition, using gadolinium-diethylenetriaminepentaacetic acid (DTPA) as a contrast agent for MR imaging and (18)F-FDG, (11)C-methionine, and (18)F-NaF as molecular tracers for PET imaging. The animals were then euthanized, and complementary radiologic (micro-CT scans) and histologic analyses were performed. In this preclinical study, we demonstrated that coregistered MR and PET images provide helpful information in a rat mammary-derived bone cancer model. First, MR imaging provided a high-definition anatomic resolution that made the localization of bone resorption and tumor extension detectable between days 9 and 18 after the injection of cancer cells in the medullary channel of the femur. Indeed, the calculation of mean standardized uptake value (SUVmean) and maximal SUV (SUVmax) in bone and soft-tissue regions, as defined from the gadolinium-DTPA contrast-enhanced MR images, showed (18)F-NaF uptake modifications and increased (18)F-FDG or (11)C-methionine uptake in the bone and surrounding soft tissues. (18)F-FDG and (11)C-methionine were compared in terms of the magnitude of change in their uptake and variability. We observed that (11)C-methionine SUVmean variations in the tumor were more important than those of (18)F-FDG. We also found fewer interindividual variations using SUVmean as a quantitative parameter than SUVmax. This preclinical evaluation demonstrated that a PET/MR image coregistration protocol provided a powerful tool to evaluate bone tumor progression in a rat model of bone metastasis and that this protocol could be translated to improve the clinical outcome for metastatic breast cancer management.

Isotropic three‐dimensional MRI‐Fricke‐infused gel dosimetry

Fricke-infused gel has been shown to be a simple and attainable method for the conformal measurement of absorbed radiation dose. Nevertheless, its accuracy is seriously hindered by the irreversible ferric ion diffusion during magnetic resonance imaging, particularly when three-dimensional (3D) dose measurement in radiosurgery is considered. In this study, the authors developed a fast three-dimensional spin-echo based Fricke gel dosimetry technique to reduce the adverse effects of ferric ion diffusion and to obtain an accurate isotropic 3D dose measurement. A skull shaped phantom containing Fricke-infused gel was irradiated using Leksell Gamma Knife. The rapid image-based dosimetry technique was applied with the use of a 3D fast spin-echo magnetic resonance imaging sequence. The authors mathematically derived and experimentally validated the correlations between dose-response characteristics and parameters of the 3D fast spin-echo MR imaging sequence. Absorbed dose profiles were assessed and compared to the calculated profiles given by the Gamma Knife treatment planning system. Coefficient of variance (CV%) and coefficient of determination (R(2)) were used to evaluate the precision of dose-response curve estimation. The agreement between the measured and the planned 3D dose distributions was quantified by gamma-index analysis of two acceptance criteria. Proper magnetic resonance imaging parameters were explored to render an accurate three-dimensional absorbed dose mapping with a 1 mm(3) isotropic image resolution. The efficacy of the dose-response estimation was approved by an R(2) > 0.99 and an average CV% of 1.6%. Average gamma pass-rate between the experimentally measured and GammaPlan calculated dose distributions were 83.8% and 99.7% for 2%/2 and 3%/3 mm criteria, respectively. With the designed MR imaging sequence and parameters, total 3D MR acquisition time was confined to within 20 min postirradiation, during which time ferric ion diffusion effects were negligible, thus enabling an accurate 3D radiation dose measurement.

Effect of scanner acoustic background noise on strict resting-state fMRI

Functional MRI (fMRI) resting-state experiments are aimed at identifying brain networks that support basal brain function. Although most investigators consider a ‘resting-state’ fMRI experiment with no specific external stimulation, subjects are unavoidably under heavy acoustic noise produced by the equipment. In the present study, we evaluated the influence of auditory input on the resting-state networks (RSNs). Twenty-two healthy subjects were scanned using two similar echo-planar imaging sequences in the same 3T MRI scanner: a default pulse sequence and a reduced “silent” pulse sequence. Experimental sessions consisted of two consecutive 7-min runs with noise conditions (default or silent) counterbalanced across subjects. A self-organizing group independent component analysis was applied to fMRI data in order to recognize the RSNs. The insula, left middle frontal gyrus and right precentral and left inferior parietal lobules showed significant differences in the voxel-wise comparison between RSNs depending on noise condition. In the presence of low-level noise, these areas Granger-cause oscillations in RSNs with cognitive implications (dorsal attention and entorhinal), while during high noise acquisition, these connectivities are reduced or inverted. Applying low noise MR acquisitions in research may allow the detection of subtle differences of the RSNs, with implications in experimental planning for resting-state studies, data analysis, and ergonomic factors.

IMPACT OF THE ADVISA MRI™ SURESCAN® PACING SYSTEM ON THE DIAGNOSTIC QUALITY OF CMR IMAGES AND CONTRACTION PATTERNS OF CARDIAC MUSCLE TISSUE DURING SCANS

The Advisa MRI™ SureScan® Pacing System is an MR conditional pacing system designed to safely undergo magnetic resonance image (MRI) scans. Its influence on image quality, particularly of cardiac MR (CMR) acquisitions, is not well known. The Advisa MRI Study evaluated the CMR image quality and

Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing.

An MR acquisition protocol and a processing method using distributed computing on the European Grid Infrastructure (EGI) to allow 3D liver perfusion parametric mapping after Magnetic Resonance Dynamic Contrast Enhanced (MR-DCE) imaging are presented. Seven patients (one healthy control and six with chronic liver diseases) were prospectively enrolled after liver biopsy. MR-dynamic acquisition was continuously performed in free-breathing during two minutes after simultaneous intravascular contrast agent (MS-325 blood pool agent) injection. Hepatic capillary system was modeled by a 3-parameters one-compartment pharmacokinetic model. The processing step was parallelized and executed on the EGI. It was modeled and implemented as a grid workflow using the Gwendia language and the MOTEUR workflow engine. Results showed good reproducibility in repeated processing on the grid. The results obtained from the grid were well correlated with ROI-based reference method ran locally on a personal computer. The speed-up range was 71 to 242 with an average value of 126. In conclusion, distributed computing applied to perfusion mapping brings significant speed-up to quantification step to be used for further clinical studies in a research context. Accuracy would be improved with higher image SNR accessible on the latest 3T MR systems available today.

Optimal Short-Time Acquisition Schemes in High Angular Resolution Diffusion-Weighted Imaging

This work investigates the possibilities of applying high-angular-resolution-diffusion-imaging- (HARDI-) based methods in a clinical setting by investigating the performance of non-Gaussian diffusion probability density function (PDF) estimation for a range of b-values and diffusion gradient direction tables. It does so at realistic SNR levels achievable in limited time on a high-performance 3T system for the whole human brain in vivo. We use both computational simulations and in vivo brain scans to quantify the angular resolution of two selected reconstruction methods: Q-ball imaging and the diffusion orientation transform. We propose a new analytical solution to the ODF derived from the DOT. Both techniques are analytical decomposition approaches that require identical acquisition and modest postprocessing times and, given the proposed modifications of the DOT, can be analyzed in a similar fashion. We find that an optimal HARDI protocol given a stringent time constraint (<10 min) combines a moderate b-value (around 2000 s/mm2) with a relatively low number of acquired directions (>48). Our findings generalize to other methods and additional improvements in MR acquisition techniques.