The current pandemic raised unique challenges for the medical system and consequently for the pediatric gastroenterology as well. Endoscopic procedures entail a high degree of infectiousness due to the generation of aerosols and are conducted in accordance with strict protocols that entail circuit separation measures for patients with minimal risks, suitable protection gear and precise indications. The pediatric gastrointestinal pathology can influence the need for an urgent endoscopy (high severity of intestinal inflammatory disease, foreign body ingestion, congenital malformations etc.) and requires the prioritizing of procedures, a careful analysis of the benefits and risks, along with the patient’s symptoms, and allotting the necessary resources for the screening of SARS-CoV-2 infection. The monitoring of chronic patients is carried out on an individualized basis, using telemedicine, which was also recently introduced in Romania. Observing the indications of the treating physician/general practitioner and giving the treatment correctly are essential for chronic patients in order to reduce the number of hospital admissions.