The paper deals with the estimation methodology for the α-stable periodic autoregressive (PAR) models. For the classical (Gaussian) PAR time series is cyclostationary systems the periodicity is manifested in the model characteristics. One of the most common characteristics used in this context is the autocovariance function. One of the methods of the PAR model estimation utilizes the Yule-Walker equations that contain the autocovariance function of the given process. However, for the infinite variance version of the PAR model (i.e., α-stable-distributed) it is expected that the autocovariance function is not properly defined. Thus, alternative measures need to be used. In this paper, we present the general idea of the modified Yule-Walker equations for the considered model. It is proposed to replace the classical dependency measure by the dependency measures properly defined for infinite variance models. We demonstrate two possible modifications based on the covariation and fractional lower order covariance. The first approach was recently proposed in the literature while the latter is a novel algorithm. We compare the effectiveness of both estimation methods for the considered model. Finally, the results are compared with the classical Yule-Walker approach. We demonstrate the limitations of the classical method for the considered model. The possible application for real data analysis is demonstrated.