Modern Stromatolites Research Articles

Environmental metabolomics characterization of modern stromatolites and annotation of ibhayipeptolides.

Lithified layers of complex microbial mats known as microbialites are ubiquitous in the fossil record, and modern forms are increasingly identified globally. A key challenge to developing an understanding of microbialite formation and environmental role is how to investigate complex and diverse communities in situ. We selected living, layered microbialites (stromatolites) in a peritidal environment near Schoenmakerskop, Eastern Cape, South Africa to conduct a spatial survey mapping the composition and small molecule production of the microbial communities from environmental samples. Substrate core samples were collected from nine sampling stations ranging from the upper point of the freshwater inflow to the lower marine interface where tidal overtopping takes place. Substrate cores provided material for parallel analyses of microbial community diversity by 16S rRNA gene amplicon sequencing and metabolomics using LC-MS2. Species and metabolite diversities were correlated, and prominent specialized metabolites were targeted for preliminary characterization. A new series of cyclic hexadepsipeptides, named ibhayipeptolides, was most abundant in substrate cores of submerged microbialites. These results demonstrate the detection and identification of metabolites from mass-limited environmental samples and contribute knowledge about microbialite chemistry and biology, which facilitates future targeted studies of specialized metabolite function and biosynthesis.

Characteristics of Early Neoproterozoic Stromatolites from Southern Liaoning, North China: Insights into the Formation of Stromatolites

Stromatolites, among the earliest fossils in Earth’s history, are widely distributed on the margins of the North China Precambrian carbonate platform. The formation processes of stromatolites reveal the biomineralization and evolution of early life in the Precambrian. The well-preserved stromatolitic dolostones recorded in the Ganjingzi Formation are developed around Yuanjiagou village, in southern Liaoning Province. The morphology of the Ganjingzi stromatolites manifests in stratiform, columnar, and domal forms. A tripartite lamina structure including light laminae and two types of dark laminae is observed in thin sections. The origins of dark laminae were related to microbial metabolism, while the light laminae were the result of the recrystallization of synsedimentary marine cement. Hardground substrate and carbonate fragments were suitable for microbes to colonize, suggesting that microbes can adapt to various current energy settings. A comparison of the growth environment, morphology, and laminae features between the Ganjingzi stromatolites and modern carbonate stromatolites from Hamelin Pool and Lagoa Vermelha suggest that the Ganjingzi stromatolites may have been formed in a restricted tidal-flat setting with high salinity and evaporation. The role of microbes that form modern stromatolites in inducing precipitation of carbonate or binding sediments, might contribute to the formation of the Ganjingzi stromatolites. The formation process of the Ganjingzi stromatolites indicates that the microbial communities, favorable substrate, and synsedimentary marine cement were the key factors in promoting the development of the Neoproterozoic stromatolites on the northeastern margin of the North China Craton.

Functional characterization of xanthorhodopsin in Salinivibrio socompensis, a novel halophile isolated from modern stromatolites.

A putative xanthorhodopsin-encoding gene, XR34, was found in the genome of the moderately halophilic gammaproteobacterium Salinivibrio socompensis S34, isolated from modern stromatolites found on the shore of Laguna Socompa (3570m), Argentina Puna. XR-encoding genes were clustered together with genes encoding X-carotene, retinal (vitamin-A aldehyde), and carotenoid biosynthesis enzymes while the carotene ketolase gene critical for the salinixanthin antenna compound was absent. To identify its functional behavior, we herein overexpressed and characterized this intriguing microbial rhodopsin. Recombinant XR34 showed all the salient features of canonical microbial rhodopsin and covalently bound retinal as a functional chromophore with λmax = 561nm (εmax ca. 60,000M-1cm-1). Two canonical counterions with pK values of around 6 and 3 were identified by pH titration of the recombinant protein. With a recovery time of approximately half an hour in the dark, XR34 shows light-dark adaptation shifting the absorption maximum from 551 to 561nm. Laser-flash induced photochemistry at pH 9 (deprotonated primary counterion) identified a photocycle starting with a K-like intermediate, followed by an M-state (λmax ca. 400nm, deprotonated Schiff base), and a final long wavelength-absorbing N- or O-like intermediate before returning to the parental 561nm-state. Initiating the photocycle at pH 5 (protonated counterion) yields only bathochromic intermediates, due to the lacking capacity of the counterion to accept the Schiff base proton. Illumination of the membrane-embedded protein yielded a capacitive transport current. The presence of the M-intermediate under these conditions was demonstrated by a blue light-induced shunt process.

Assessing the reliability of modern marine stromatolites as archives for the uranium isotope paleoredox proxy

Uranium isotopes (238U/235U) are commonly utilised in marine carbonates to reconstruct the redox evolution of ancient oceans and the atmosphere. However, questions remain concerning U isotope fractionation during carbonate precipitation and/or early sedimentary diagenesis. Moreover, the stromatolitic nature of many Precambrian limestones and dolostones brings further questions about U isotope fractionation during stromatolite formation due to microbial activity. Thus, it is unclear whether stromatolites are reliable archives for the U isotope composition of seawater. Here we measure the 238U/235U ratio of modern stromatolites from the hypersaline Shark Bay, Western Australia, a key study area that represents the largest modern example of stromatolite growth globally. A component-specific approach was utilised to analyse the uppermost crusts of modern stromatolites, older material from the deeper stromatolite laminae and the substrate upon which the stromatolites are forming. Our interpretations of δ238U data are aided by δ234U, δ18O, δ13C and trace element measurements, including some mineralogy and total organic carbon determinations for selected samples.Modern aragonitic crusts of stromatolites from the subtidal and intertidal zones around Shark Bay exhibited a narrow range of δ238U (−0.30 to −0.33‰), corresponding to a small offset of ca. +0.07‰ from seawater. This range of δ238U values overlaps with that of other primary carbonate precipitates in shallow marine environments such as corals but with a slightly higher mean δ238U. We investigated if this offset may be associated with the coprecipitation of U with aragonite from hypersaline seawater in Shark Bay, which has a higher proportion of dissolved U present as Ca2UO2(CO3)3 compared to open seawater. However, this measured offset is much smaller than that predicted using a speciation-dependent isotope fractionation model. Sub-recent material in the deeper stromatolite laminae exhibited higher and more variable δ238U (up to −0.15‰) compared to the modern aragonitic crusts of stromatolites. The strong inverse correlation between δ238U and the total organic carbon content (r = −0.83) and positive correlation with Mn concentrations (r = 0.91) suggest that 238U was preferentially reduced in the deeper laminae in association with organic carbon remineralisation under reducing conditions. The average δ238U offset of sub-recent stromatolite laminae from modern seawater was +0.13 ± 0.11‰ (1 s.d.), which is slightly lower than, but within uncertainty of, the offset measured for bulk carbonates from the Bahamas (+0.27 ± 0.14‰; 1 s.d.). These results demonstrate that stromatolites are valuable archives of global seawater δ238U, even in hypersaline restricted basins such as Shark Bay, but an offset to account for syndepositional diagenesis is likely required to accurately reconstruct seawater δ238U using ancient stromatolites.

Mapping mineralogical heterogeneities at the nm-scale by scanning electron microscopy in modern Sardinian stromatolites: Deciphering the origin of their laminations

Stromatolites are found throughout the geological record and have received strong attention because they provide precious information about paleoenvironments and microbial paleobiodiversity. However, while this information is interpreted based on our knowledge about modern analogs, the latter remains incomplete. Here, we investigated the environmental and biological information recorded by modern stromatolites in Mari Ermi, a coastal pond in Western Sardinia that experiences severe seasonal evaporation and large salinity variations. For this purpose, we combined a variety of analytical tools, allowing to characterize the mineralogical composition of these stromatolites from the bulk, centimeter-scale to the nanometer-scale and assess the spatial distribution of the mineral phases. In particular, we used quantified x-ray elemental maps provided by energy dispersive x-ray spectrometry analyses coupled with scanning electron microscopy (SEM-EDXS). These maps were processed using an innovative data treatment allowing (i) mineral phase recognition, (ii) assessment of the mineral formula of each phase and (iii) mapping of their spatial distribution with a spatial resolution down to a hundred nanometers. Overall, this proved as an efficient approach to unravel mineralogical heterogeneities and detect informative mineral phases overlooked by bulk analyses. Mari Ermi stromatolites were mostly composed of magnesian calcite with an average Mg/Ca of ~0.1–0.2 as indicated by bulk analyses. However, microscopy observations revealed variable Mg-contents of calcite with a specific distribution, the most Mg-enriched calcites (Mg/Ca up to ~0.5) being systematically distributed around microbial remnants. Moreover, Mari Ermi stromatolites comprised an alternation of Mg-richer and Mg-poorer laminae, which paralleled the varying enrichment in microbial remnants of alternating laminae. The combination of SEM-EDXS, focused ion beam milling and transmission electron microscopy allowed to detect several minor phases, hardly or not detected at all by bulk analyses, such as aragonite, a variety of clay minerals as well as a gypsum-like phase. An additional calcium sulfate phase, best interpreted as S-apatite (cesanite), was detected by SEM-EDXS. Overall, this mineral assemblage and its definite spatial distribution record only discrete stages of the evaporation of Mari Ermi lagoon. Moreover, microorganisms seem to have a major control on Mg substitution in calcite. As a result, the dynamics of microbial populations, influenced by the salinity variations induced by evaporation in the lagoons, generates the formation of laminae in Mari Ermi stromatolites.

Stylolitization structures as possible migration routes of organic matter in microbial genesis sedimentary deposites

It was studied that the possibilities of preservation, migration and transformation of organic matter (OM) in rocks of Precambrian age, the textural and structural characteristics of which are inextricably linked with the physiological characteristics of microorganisms, and the role of stylolithization structures in these processes. The similarity of modern stromatolites with ancient ones in the mechanism of deposition of carbonate micrite and the formation of porous frameworks allowed us to establish that a significant amount OM of cyanobacterial lamins could be preserved after the buildings were immersed in the sedimentation basin and transformed into sedimentary strata. OM was concentrated on numerous relict surfaces between micrite carbonate secretions deposited by microorganisms during life. Subsequent transformations were expressed in the recrystallization of the carbonate substance, accompanied by a significant loss of primary voidness, oustion and redistribution of OM, as well as clay material deposited from the suspension. During detailed petrographic studies, it was observed how clay-organic material (COM), displaced by recrystallization, concentrated on the crystal faces and in intercrystalline pores in certain areas and composed numerous lenticular layers in contact with each other, forming surfaces of complex configurations - rudimentary microstylolites. According to the authors, recrystallization is one of the main catalysts of stillolithization processes, because it creates mineral aggregates in which the pressure on the COM enclosed between them varies greatly at different points. This contributes to the occurrence of the phenomenon of differentiated dissolution under pressure, more intensive transformation of OM in areas with maximum load and, as a consequence, excessive release of CO, which in turn leads to saturation of pore solutions with carbon dioxide and initiation of chemical dissolution. Probably, this is how stylolites and associated fractured voidness are formed in stromatolites, which is available for the migration of OM.

Carbon sequestration potential of Mg carbonate and silicate biomineralization in the presence of cyanobacterium Synechococcus

Bacterially-induced sequestration of atmospheric CO2 is at the forefront of geomicrobiological research due to high potential of this process in the mitigation of climate warming. Cyanobacteria have been known to form stromatolites since the Precambrian and could be used to enhance this process by sequestering carbon via the biomineralization of Mg and Ca carbonates. Currently, olivine (MgSiO4) is considered as one of the most efficient silicate minerals suitable for CO2 capture in the form of secondary Mg carbonates. However, the role of dissolved Si on the efficiency of biomineralization is not sufficiently well understood. The present study intended to reproduce in the laboratory the processes of biomineralization by Synechococcus sp. cyanobacteria extracted from modern stromatolites in a carbonate- and Mg-bearing medium containing various Si concentrations, in order to characterize the rates and stoichiometry of reactions as well as mineralogical nature of precipitates. The results demonstrated the dominant role of cyanobacterial metabolism in the precipitation of carbonate minerals by increasing the pH of the medium via photosynthesis and providing a template in the form of cell walls and their EPS for mineral nucleation. Transmission electron microscopy and other microscopic and spectroscopic observations and analyses identified magnesium carbonates and silicates, such as nesquehonite (MgCO3·3H2O) and/or hydromagnesite (Mg5(CO3)4(OH)2·4(H2O) together with amorphous analogue of sepiolite (Mg4Si6O15(OH)2·6H2O) as dominant precipitated minerals. Apparent inorganic C precipitation rates were not affected by the concentration of Mg and Si in the initial solution. However, the carbon sequestration potential was 20–40% higher in the presence of Si. Overall, the experimental approach developed in this study allows efficient reproduction of combined Mg hydroxy‑carbonate and hydrous silicate precipitation under cyanobacterial activity and helps to constrain optimal conditions of cyanobacteria-induced CO2 sequestration.

Precambrian Paleobiology: Precedents, Progress, and Prospects

In 1859, C. R. Darwin highlighted the “inexplicable” absence of evidence of life prior to the beginning of the Cambrian. Given this lack of evidence and the natural rather than theological unfolding of life’s development Darwin espoused, over the following 50 years his newly minted theory was disputed. At the turn of the 19th century, beginning with the discoveries of C. D. Walcott, glimmerings of the previously “unknown and unknowable” early fossil record came to light – but Walcott’s Precambrian finds were also discounted. It was not until the breakthrough advances of the 1950’s and the identification of modern stromatolites (1956), Precambrian phytoplankton in shales (1950’s), stromatolitic microbes in cherts (1953), and terminal-Precambrian soft-bodied animal fossils (1950’s) that the field was placed on firm footing. Over the following half-century, the development and application of new analytical techniques coupled with the groundbreaking contributions of the Precambrian Paleobiology Research Group spurred the field to its international and distinctly interdisciplinary status. Significant progress has been made worldwide. Among these advances, the known fossil record has been extended sevenfold (from ∼0.5 to ∼3.5 Ga); the fossil record has been shown consistent with rRNA phylogenies (adding credence to both); and the timing and evolutionary significance of an increase of environmental oxygen (∼2.3 Ga), of eukaryotic organisms (∼2.0 Ga), and of evolution-speeding and biota-diversifying eukaryotic sexual reproduction (∼1.2 Ga) have been identified. Nevertheless, much remains to be learned. Such major unsolved problems include the absence of definitive evidence of the widely assumed life-generating “primordial soup”; the timing of the origin of oxygenic photosynthesis; the veracity of postulated changes in global photic-zone temperature from 3.5 Ga to the present; the bases of the advent of eukaryotic sexuality-requiring gametogenesis and syngamy; and the timing of origin and affinities of the small soft-bodied precursors of the Ediacaran Fauna.

Builders, tenants, and squatters: the origins of genetic material in modern stromatolites.

Micro-organisms have long been implicated in the construction of stromatolites. Yet, establishing a microbial role in modern stromatolite growth via molecular analysis is not always straightforward because DNA in stromatolites can have multiple origins. For example, the genomic material could represent the microbes responsible for the construction of the stromatolite (i.e., "builders"), microbes that inhabited the structure after it was built (i.e., "tenants"), or microbes/organic matter that were passively incorporated after construction from the water column or later diagenetic fluids (i.e., "squatters"). Disentangling the role of micro-organisms in stromatolite construction, already difficult in modern systems, becomes more difficult as organic signatures degrade, and their context is obscured. To evaluate our ability to accurately decipher the role of micro-organisms in stromatolite formation in geologically recent settings, 16/18S SSU rRNA gene sequences were analyzed from three systems where the context of growth was well understood: (a) an actively growing stromatolite from a silicic hot spring in Yellowstone National Park, Wyoming, where the construction of the structure is controlled by cyanobacteria; (b) a mixed carbonate and silica precipitate from Little Hot Creek, a hot spring in the Long Valley Caldera of California that has both abiogenic and biogenic components to accretion; and (c) a near-modern lacustrine carbonate stromatolite from Walker Lake, Nevada that is likely abiogenic. In all cases, the largest percentage of recovered DNA sequences, especially when focused on the deeper portions of the structures, belonged to either the tenant or squatter communities, not the actual builders. Once removed from their environmental context, correct interpretation of biology's role in stromatolite morphogenesis was difficult. Because high-throughput genomic analysis may easily lead to incorrect assumptions even in these modern and near-modern structures, caution must be exercised when interpreting micro-organismal involvement in the construction of accretionary structures throughout the rock record.

Conserved bacterial genomes from two geographically isolated peritidal stromatolite formations shed light on potential functional guilds.

Stromatolites are complex microbial mats that form lithified layers. Fossilized stromatolites are the oldest evidence of cellular life on Earth, dating back over 3.4 billion years. Modern stromatolites are relatively rare but may provide clues about the function and evolution of their ancient counterparts. In this study, we focus on peritidal stromatolites occurring at Cape Recife and Schoenmakerskop on the southeastern South African coastline, the former being morphologically and structurally similar to fossilized phosphatic stromatolites formations. Using assembled shotgun metagenomic analysis, we obtained 183 genomic bins, of which the most dominant taxa were from the Cyanobacteria phylum. We identified functional gene sets in genomic bins conserved across two geographically isolated stromatolite formations, which included relatively high copy numbers of genes involved in the reduction of nitrates and phosphatic compounds. Additionally, we found little evidence of Archaeal species in these stromatolites, suggesting that they may not play an important role in peritidal stromatolite formations, as proposed for hypersaline formations.

Between a Rock and a Soft Place: The Role of Viruses in Lithification of Modern Microbial Mats

Stromatolites are geobiological systems formed by complex microbial communities, and fossilized stromatolites provide a record of some of the oldest life on Earth. Microbial mats are precursors of extant stromatolites; however, the mechanisms of transition from mat to stromatolite are controversial and are still not well understood. To fully recognize the profound impact that these ecosystems have had on the evolution of the biosphere requires an understanding of modern lithification mechanisms and how they relate to the geological record. We propose here viral mechanisms in carbonate precipitation, leading to stromatolite formation, whereby viruses directly or indirectly impact microbial metabolisms that govern the transition from microbial mat to stromatolite. Finding a tangible link between host-virus interactions and changes in biogeochemical processes will provide tools to interpret mineral biosignatures through geologic time, including those on Earth and beyond.

Stromatolites as Biosignatures of Atmospheric Oxygenation: Carbonate Biomineralization and UV-C Resilience in a Geitlerinema sp. - Dominated Culture.

Modern stromatolites are key to the record of past microbial activity preserved in fossil carbonate deposits. Mono-phototrophic cultures dominated by the cyanobacterium Geitlerinema sp. were obtained from a laboratory-maintained, low magnesium-calcite stromatolite originating from Lagoa Vermelha, Brazil. This lagoonal system has been described as a Precambrian analog, illustrating a period of photosynthetically induced atmospheric oxygenation, which created a global sanctuary from shortwave solar radiation and enabled the evolution of modern life on Earth. The enrichment cultures precipitate carbonates in minimal media, suggesting that cyanobacterial photosynthesis and extracellular polymeric substance production may be crucial in the mineralization of the studied stromatolite. We further show that Geitlerinema sp. can build and maintain filamentous mats under long-term UV-C exposure. Our results suggest that present day stromatolites dominated by cyanobacteria may be interpreted as biosignatures of atmospheric oxygenation and have implications for the search for putative biological traces on Mars.

Biotic and Abiotic Imprints on Mg-Rich Stromatolites: Lessons from Lake Salda, SW Turkey

Modern hydrated Mg rich stromatolites are actively growing along the shallow shorelines of Lake Salda (SW Turkey). An integrated approach involving isotopic, mineralogical, microscopic, and organic/geochemical techniques along with culture-independent molecular methods were applied to various lake samples to assess the role of microbial processes on stromatolite formation. This study further explores the biosignature preservation potential of fossil stromatolites by comparing with textures, lipid profiles and isotopic composition of the modern stromatolites. Similar lipid profile and δ13C isotope values in active and fossil stromatolites argue that CO2 cycling delicately balanced between photosynthetic and heterotrophic (aerobic) activity as in the active ones may have regulated stromatolite formation in the lake. A decrease in the exopolymeric substances (EPS) profile of the mat and concurrent hydromagnesite precipitation imply a critical role for EPS in the formation of stromatolite. Consistently, a discrete, discontinuous lamination and clotted micropeloidal textures with cyanobacterial remnants in the fossil stromatolites likely refer to partial degradation of EPS, creating local nucleation sites and allowing precipitation of hydrated Mg minerals and provide a link to the active microbial mat in the modern stromatolites. Our results for the first time provide strong evidence for close coupling of cyanobacterial photosynthesis and aerobic heterotrophic respiration on hydromagnesite textures involved in the stromatolite formation of Lake Salda. The creation of photosynthesis induced high-pH conditions combined with a change in the amount and properties of the EPS and the repetition of these processes over time seems to be a possible pathway for stromatolite growth in the lake. Understanding these microbial symbioses and their mineralized records may provide new insights on the formation mechanism of Mg-rich carbonates not only for terrestrial geological records but also for planetary bodies like Mars, where hydrated Mg-carbonate deposits have been identified in possible paleolake deposits at Jezero crater, the landing site of the NASA Mars 2020 rover.

Stromatolites, so what?! A tribute to Robert N. Ginsburg

AbstractIn tribute to Dr. Robert N. Ginsburg (1925–2017), we examine his 1991 seminal paper Controversies about Stromatolites: Vices and Virtues, which summarized current ideas about stromatolites including controversies of definition, whether ancient stromatolites should be interpreted as sedimentary structures and mechanisms of carbonate fixation. The accepted model of stromatolite morphogenesis in 1991 was that biology controls microscale internal structure whereas environment controls macroscale morphology. Ginsburg, however, predicted that biology and environmental influences on stromatolite growth were closely coupled at macro, meso and micro scales. Recent research in Hamelin Pool and the Bahamas has advanced our understanding of the inherent duality of stromatolites and associated controversies. These studies suggest that at the macroscale, when physical forces are strong, the environment is the main control on the morphology; however, when physical forces are weak, biological communities become the main drivers of morphology. Therefore, stromatolites can be considered both as fossils and as sedimentary structures dependent on the energy in the environment of deposition. At the mesoscale, as predicted by Trompette, stromatolite fabrics are influenced equally by environment and biology. As the degree of lamination is often unknown or heterogeneous, a generic genetic term such as ‘microbialite’ is considered the most appropriate terminology for structures of probable microbial origin. At the microscale, stromatolite microfabrics reflect environmentally driven cycling of microbial communities, reflecting both biology and environment. With respect to carbonate fixation, research on modern stromatolites provides a model for biofilm precipitation of micritic laminae lacking microfossils in ancient stromatolites. As pointed out by Ginsburg, the inherent duality of environmental and biological controls of morphogenesis at all scales is at the root of many long‐standing controversies. Recent investigations corroborate the foresight of Ginsburg nearly 30 years ago, further confirming well‐preserved stromatolites can provide insight into both biology and environmental factors in ancient ecosystems.

Evaluation of the scientific value of Lagoa Salgada (Rio de Janeiro, Brazil): characterization as geological heritage, threats and strategies for geoconservation

Lagoa Salgada is located in the northern coast of Rio de Janeiro and is of great scientific relevance for its modern stromatolites. This study aimed to map the types of microbialites, identify damage and threats and provide geoconservation suggestions. Microbialite mapping and sampling was authorized by the administrative body of the Lagoa do Acu State Park - PELAG, where the lagoon is partially located. Petrographic analysis was conducted on stromatolite types according to external morphology. Geology and heritage value data were added to the GEOSSIT platform and analysis of ecosystem services and scientific value was performed based on bibliometrics. Three types of stromatolite were distinguished and mapped (large domal, small domal and branched columnar) with two types of microbial mat (colloform and polygonal). These morphologies suggest different hydrodynamic agents in the growth process and regarding the position in the water column. According to GEOSSIT criteria the site stands out as a “Geosite of International Relevance” and of national scientific relevance for education and tourism, serving as a model for studies on preterit environments. Ecosystem services provided by its Geodiversity, are: (a) Regulation: atmospheric processes related to photosynthesis performed by bacteria during the carbon cycle, fixing carbonates in the biostructures; (b) Support: provision of a habitat established by the seasonal hyper-salinity of the environment; (c) Provision: presence of ichnofossils and considered an environment analogous to the Pre-Salt rock reservoir; (d) Culture: environmental quality of the landscape; geotourism through a Geological Pathways Project panel; historical significance (Roteiro dos Sete Capitaes); inspiration for poems and legend; and a location for didactic excursions; and (e) Knowledge: history of the evolution of life on Earth; the first Holocene stromatolites in Brazil; study of sea-level variation; and the possibility of generating jobs in Geoparks. Regarding the scientific value, 32 citations were found in the bibliography among complete articles in periodicals, theses, dissertations, monographs and book chapters. Damage and threats to which the stromatolites are subjected were identified. GEOSSIT recommends medium-term protection. Anthropic remobilization of the biostructures, agricultural use, proximity to the Acu Port Complex and non-inclusion of the lagoon’s northern portion in the PELAG area, despite being the only area with branched stromatolites, can be highlighted as damage and threats. Promotion through lectures, booklets, field classes, and maintenance of the Geological Pathways Panel aimed at the local population and visitors is necessary. Scientific knowledge should be incorporated into management of the Geosite to achieve Geoconservation.

Viral Communities of Shark Bay Modern Stromatolites.

Single stranded DNA viruses have been previously shown to populate the oceans on a global scale, and are endemic in microbialites of both marine and freshwater systems. We undertook for the first time direct viral metagenomic shotgun sequencing to explore the diversity of viruses in the modern stromatolites of Shark Bay Australia. The data indicate that Shark Bay marine stromatolites have similar diversity of ssDNA viruses to that of Highbourne Cay, Bahamas. ssDNA viruses in cluster uniquely in Shark Bay and Highbourne Cay, potentially due to enrichment by phi29-mediated amplification bias. Further, pyrosequencing data was assembled from the Shark Bay systems into two putative viral genomes that are related to Genomoviridae family of ssDNA viruses. In addition, the cellular fraction was shown to be enriched for antiviral defense genes including CRISPR-Cas, BREX (bacteriophage exclusion), and DISARM (defense island system associated with restriction-modification), a potentially novel finding for these systems. This is the first evidence for viruses in the Shark Bay stromatolites, and these viruses may play key roles in modulating microbial diversity as well as potentially impacting ecosystem function through infection and the recycling of key nutrients.

Hydrochemistry of peritidal stromatolite pools and associated freshwater inlets along the Eastern Cape coast, South Africa

Modern stromatolites are rare due to several factors that restrict their occurrence, although the conditions promoting their formation are not always well understood. This study performed a comparative analysis of the hydrochemistry of a well-developed peritidal stromatolite pool fed by a freshwater inlet, versus a site with no stromatolite growth, along the Eastern Cape coast of South Africa. Hydrochemical data were modelled with USGS PHREEQC 3.4.0 software to determine the saturation state of water samples at a range of temperature and salinity conditions. The well-developed stromatolite pool always favoured carbonate mineral precipitation, whereas this was not true for the site without stromatolite growth. The chemical potential of the systems indicated that any calcite precipitated was biomediated. Furthermore, as opposed to the site without growth the stromatolite-bearing site was saturated with calcite precursor mineral phases. It was found that nutrients, flow rates, and other physicochemical parameters also influence stromatolite development. The carbonate chemistry of additional freshwater inlets feeding stromatolite-bearing pools and the substrate the inlets emanate from was also investigated. The carbonate content of freshwater inlets along the coast is likely derived from a calcareous source inland from where seeps occur. This study importantly showed that a combination of parameters, viz. physicochemical, hydrochemical, thermodynamical and nutritional, influences the precipitation of carbonate minerals in these peritidal stromatolite-systems.

Formation of stromatolite lamina at the interface of oxygenic-anoxygenic photosynthesis.

In modern stromatolites, mineralization results from a complex interplay between microbial metabolisms, the organic matrix, and environmental parameters. Here, we combined biogeochemical, mineralogical, and microscopic analyses with measurements of metabolic activity to characterize the mineralization processes and products in an emergent (<18months) hypersaline microbial mat. While the nucleation of Mg silicates is ubiquitous in the mat, the initial formation of a Ca-Mg carbonate lamina depends on (i) the creation of a high-pH interface combined with a major change in properties of the exopolymeric substances at the interface of the oxygenic and anoxygenic photoautotrophic layers and (ii) the synergy between two major players of sulfur cycle, purple sulfur bacteria, and sulfate-reducing bacteria. The repetition of this process over time combined with upward growth of the mat is a possible pathway leading to the formation of a stromatolite.

UV-Resistant Actinobacteria from High-Altitude Andean Lakes: Isolation, Characterization and Antagonistic Activities.

Polyextremophiles are present in a wide variety of extreme environments in which they must overcome various hostile conditions simultaneously such as high UVB radiation, extreme pHs and temperatures, elevated salt and heavy-metal concentration, low-oxygen pressure and scarce nutrients. High-altitude Andean lakes (HAALs; between 2000 and 4000m) are one example of these kinds of ecosystems suffering from the highest total solar and UVB radiation on Earth where an abundant and diverse polyextremophilic microbiota was reported. In this work, we performed the first extensive isolation of UV-resistant actinobacteria from soils, water, sediments and modern stromatolites at HAALs. Based on the 16S rRNA sequence, the strains were identified as members of the genera Streptomyces, Micrococcus, Nesterenkonia, Rhodococcus, Microbacterium, Kocuria, Arthrobacter, Micromonospora, Blastococcus, Citrococcus and Brevibacterium. Most isolates displayed resistance to multiple environmental stress factors confirming their polyextremophilic nature and were able to produce effective antimicrobial compounds. HAALs constitute a largely unexplored repository of UV-resistant actinobacteria, with high potential for the biodiscovery of novel natural products.

Arsenic metabolism in high altitude modern stromatolites revealed by metagenomic analysis

Modern stromatolites thrive only in selected locations in the world. Socompa Lake, located in the Andean plateau at 3570 masl, is one of the numerous extreme Andean microbial ecosystems described over recent years. Extreme environmental conditions include hypersalinity, high UV incidence, and high arsenic content, among others. After Socompa’s stromatolite microbial communities were analysed by metagenomic DNA sequencing, taxonomic classification showed dominance of Proteobacteria, Bacteroidetes and Firmicutes, and a remarkably high number of unclassified sequences. A functional analysis indicated that carbon fixation might occur not only by the Calvin-Benson cycle, but also through alternative pathways such as the reverse TCA cycle, and the reductive acetyl-CoA pathway. Deltaproteobacteria were involved both in sulfate reduction and nitrogen fixation. Significant differences were found when comparing the Socompa stromatolite metagenome to the Shark Bay (Australia) smooth mat metagenome: namely, those involving stress related processes, particularly, arsenic resistance. An in-depth analysis revealed a surprisingly diverse metabolism comprising all known types of As resistance and energy generating pathways. While the ars operon was the main mechanism, an important abundance of arsM genes was observed in selected phyla. The data resulting from this work will prove a cornerstone for further studies on this rare microbial community.