AbstractRising sea levels due to climate change are causing increased salinisation of low‐lying coastal and floodplain soils, and the impact of this process on the bioavailability of plant nutrients needs to be understood as mitigation strategies are adapted. Zinc (Zn) is an element of particular importance due to its function as a micronutrient for plants including rice and other staple foods. In the current study, our aim was to investigate the effects of salinisation on zinc adsorption onto soils representing at‐risk coastal and floodplain environments, addressing in particular our knowledge gap concerning the roles that solution chemistry and soil composition play. To this end, we conducted batch adsorption experiments in the laboratory and ran geochemical models in saline solutions up to 0.7 mol L−1 ion strength incorporating both (i) a multi surface model (MSM) for surface reactions containing three phases, that is iron hydroxides, organic matter and phyllosilicate clays, and (ii) aqueous‐phase complexation to dissolved organic and inorganic ligands. Surface reactions were modelled using the diffuse double layer model, the NICA–Donnan model and an ion exchange model using the Gaines–Thomas convention. We combined the experimentally determined mass composition of surface phases with generic modelling parameters taken from the literature. We first show that increasing salinity enhances the formation of aqueous Zn‐chloride complexes in the presence of dissolved organic matter and bicarbonate, thereby decreasing the availability of free Zn2+ and supressing the partitioning of zinc to the adsorbed phase. We demonstrate using batch adsorption experiments with a calcareous hydraquent and a tropaquept, that salinity decreases zinc adsorption strongly in the pH range between 3 and 6. Satisfactory agreement between experiments and model calculations was achieved with root‐mean‐square errors ranging for different salinities between 2.88% and 2.92% for the hydraquent and between 4.59% and 2.74% for the tropaquept soil. Model predictions of adsorption were slightly inferior at low salinity for the hydraquent soil and at high salinity for the tropaquept soil, pointing possibly to an incomplete geochemical model or to a need to parametrise surface adsorption models at higher ionic strengths. Present surface models have been largely parametrised at lower ionic strength. We lastly apply the MSM to examine zinc adsorption in five endoaquepts soils, representing soil series from Bangladesh. We show that increasing salinity decreases zinc adsorption to the soil organic matter and the clay fractions. We conclude from our findings that increased soil salinity due to rising sea levels and climate change will have a significant impact on zinc cycling and possibly other micronutrients in areas where coastal soils and floodplain soils overlap, such as deltas and estuaries. In particular, we predict a decrease in zinc adsorption in acidic to neutral soils. The availability of zinc for biouptake through the roots of crop plants including rice will be significantly disturbed following salinisation, most likely affecting crop production. Our study demonstrates the potential that geochemical modelling combined with experimental data has to improve our capability to assess the effects of salinity due to rising seawater levels in vulnerable regions of the world.