The active pre-chamber (APC) jet ignition system is one of the primary technologies for achieving ultra-lean combustion and high thermal efficiency in engines. The impact of the jet process within the engine, as well as its control parameters, on emission pollutants (particularly soot particles) remains unclear. This study focuses on examining the effects of various low-flow injection control strategies on engine combustion and emissions by using optical experiments and numerical simulations. It also explores the impact of different ignition advance angles (ignition timings) based on a short pre-chamber mixing interval to observe ignition combustion, flame propagation, and emission characteristics under ultra-lean conditions (λ = 2.0). The main conclusions are as follows. Appropriately increasing the injection mass can enhance engine load. However, further increases in injection mass significantly raise particulate emissions, resulting in an increase in particle number by up to more than 37-fold, especially for small particles in the 5–––10 nm size range. The chemical reaction between the luminous jet flame and the bright incandescent wake jet flame, as captured by high-speed photography, effectively characterizes the various stages of jet ignition. To reduce particulate matter emissions, it is crucial to avoid the foreseeable wake jet flame caused by the enrichment of the jet mixture in the pre-chamber. The low-flow injection timing should neither be too early nor close to the ignition spark timing. The early injection causes fuel to accumulate at the top of the pre-chamber, hindering the jet flame’s propagation into the main combustion chamber. Late low-flow injection leads to fuel enrichment, resulting in uneven mixing and poor atomization and diffusion due to short mixing times. Ignition after a short mixing time interval tends to increase knocking, resulting in intense combustion and an advanced phase, which slightly reduces load and combustion stability. Regarding the heat release ratio, the total heat release from the two combustion stages in the pre-chamber should ideally account for about 5–6 % of the heat release in the main chamber.