AbstractWe present ΔO2/Ar‐based estimates of mixed layer net community production (NCP) from three summer cruises in the North American Arctic and Subarctic oceans. Coupling shipboard underway and discrete observations with output from an ocean circulation model, we correct the NCP estimates for vertical mixing fluxes impacting the surface O2 budget. Large positive mixing fluxes, exceeding 100 mmol O2 m−2 d−1, were derived in regions of strong wind‐driven mixing, such as the Labrador Sea (LS), and in the physically‐dynamic Canadian Arctic Archipelago. In contrast, flux corrections were small (<10 mmol O2 m−2 d−1, on average) in the density‐stratified Baffin Bay, where mixing was low, and parts of the well‐mixed Hudson Strait (HS), where vertical O2 gradients were weak. The distribution of corrected NCP was highly heterogenous across the study region, reflecting varying contributions of nutrient supply, freshwater input and sea ice dynamics. Elevated NCP was apparent in the LS, HS, and nearshore regions influenced by glacial meltwater and recent ice retreat. Low NCP and localized net heterotrophy occurred in Baffin Bay, and near strong freshwater and organic matter sources in Hudson Bay and the Queen Maud Gulf. A multiple linear regression model developed using available oceanographic data explained ∼58% of the observed NCP variability. Our work demonstrates the spatially explicit influence of vertical mixing on ΔO2/Ar‐based NCP calculations across varied hydrographic conditions, and presents a novel approach to account for this process. This study contributes new knowledge of biological productivity distributions in under‐sampled, rapidly changing, high‐latitude waters.