Mineralization Of Organic Nitrogen Research Articles

Feedstock optimization with low carbon to nitrogen ratio during algal sludge aerobic composting: Quality and gaseous emissions

This study investigated compost quality and gaseous emissions during the algal sludge composting. The experiment explored the feasibility of low initial carbon to nitrogen (C/N) ratio composting by using different volume ratios of algal sludge and spent mushroom substrates (1:1, 1:2, 1:3, and 1:4, corresponding to C/N ratios of 9.5, 12.3, 14.6, 16.0, respectively). The results showed that increasing the proportion of algal sludge in the initial material led to a longer maturation time and higher nitrogen losses but also enhanced the mineralization of organic nitrogen (converted to NH4+ and NO3-) and reduced carbon losses. The addition of carbon-rich bulking agents within a certain range improved the diversity and interactions of bacterial communities during algal sludge composting. In conclusion, considering the nitrogen and carbon lost, retained, and made available across the four treatments, treatment 3 (C/N = 14.6) appears to be the optimal choice for low C/N composting.

Minimizing nitrate output from soil organic nitrogen mineralization in citrus orchard catchments through green manure mulching

Minimizing nitrate output from soil organic nitrogen mineralization in citrus orchard catchments through green manure mulching

Distribution and Mineralization of Organic Nitrogen in Fluvo-Aquic Soils with Varying Textures

Distribution and Mineralization of Organic Nitrogen in Fluvo-Aquic Soils with Varying Textures

Key bacterial taxa with specific metabolisms and life history strategies sustain soil microbial network stability exposed to carbendazim and deoxynivalenol

Co-contamination of carbendazim (CBD) and deoxynivalenol (DON) is common in agricultural soils, yet their ecological impact on soil microbiome remains poorly assessed. Here, we investigated the influence of CBD and DON on the structure, function, and co-occurrence networks of soil microbiome. The combined treatment of CBD and DON significantly exacerbated the negative impacts on soil microbial diversity, functional diversity, and microbial network stability compared to individual treatments. Specifically, Lysobacter, Gemmatimonas, Nitrospira, Massilia, and Bacillus were identified as indicator species for CBD and DON. Simultaneously, the abundance of genes involved in key ecological functions, such as nitrification (amoA) and organic phosphorus mineralization (phoAD), was significantly reduced. Notably, key bacterial taxa Nitrospira and Gemmatimonas, with K-life history strategy and capabilities for nitrification and organic nitrogen mineralization, played crucial roles in promoting positive interactions in networks. Furthermore, variance partitioning analysis (VPA) and structural equation modeling (SEM) demonstrated that the abundance and niche breadth of key bacterial taxa were the primary drivers of microbial network stability. In conclusion, our study provides new insights into how soil microbiomes and networks respond to pesticides and mycotoxins, aiding in a more comprehensive assessment of exposure risks.

Organic carbon and nitrogen mineralization under saline conditions of dry hot arid lands: an incubation experiment

Organic carbon and nitrogen mineralization under saline conditions of dry hot arid lands: an incubation experiment

Increased N2O emissions from aerobic soil with warming is mainly attributable to increased mineralization of organic nitrogen: An incubation study

Increased N2O emissions from aerobic soil with warming is mainly attributable to increased mineralization of organic nitrogen: An incubation study

Ammonia Recovery from Manure Wastewater Using Membrane Electrochemical Systems

Livestock systems face a challenging future with increasing conflict between food production and the environment. Many of the environmental issues stem from livestock manure as it can lose manure constituents, including nutrients, pathogens, and organic matter, to the environment, degrading both surface and ground water quality, contributing to climate change, causing nuisance odors, and creating human health issues. Processing manure to recover embedded nutrients such as ammonium nitrogen and phosphorus can mitigate these impacts by increasing nutrient density, making a more manageable fertilizer that has a greater economically feasible transport distance. Membrane electrochemical system (MES), which uses electrochemical reactions to transport ions through ion exchange membranes, has been considered as an effective technology for separating ammonium ions from ammonia-rich wastewater towards recovery. This study investigates the system performance of MES for ammonia recovery from various streams of livestock manure. We elucidate the pathways of organic nitrogen mineralization and how they can be improved to enhance ammonia recovery in MES. Additionally, we develop a mathematical model to systematically investigate the ion transport behaviors in MES. Our analysis shows that current density, membrane properties, and initial competing ion concentrations can intensively affect the selectivity of ammonium ion transport over other ions. The findings of this study advance our understanding of the key metrics affecting ammonia recovery from livestock manure using MES and can guide the development of more efficient and effective systems.

Effects of Incubation Temperature and Sludge Addition on Soil Organic Carbon and Nitrogen Mineralization Characteristics in Degraded Grassland Soil

Elucidating the characteristics and underlying mechanisms of soil organic carbon (SOC) and nitrogen mineralization in the context of sludge addition is vital for enhancing soil quality and augmenting the carbon sink capacity of soil. This study examined the chemical properties, enzyme dynamics, and organic carbon and nitrogen mineralization processes of soil from degraded grasslands on the Loess Plateau at various incubation temperatures (5, 15, 25, and 35 °C) and sludge addition rates (0%, 5.0%, 10.0%, and 20.0%) through a laboratory incubation experiment. The results showed that incubation temperature, sludge addition, and their interactive effects significantly altered the soil enzyme C:N, C:P, and N:P stoichiometries. The cumulative mineralization rates of SOC and nitrogen increased significantly with increasing incubation temperature and sludge addition rate. Principal component analysis revealed a significant linear correlation between cumulative SOC and nitrogen mineralization. Random forest analysis indicated that β-1,4-Glucosidase (BG), β-1,4-N-acetyglucosaminidase (NAG), cellobiohydrolase (CBH), ammonium nitrogen (NO3−), enzyme C:P ratio, alkaline phosphatase (ALP), and incubation temperature were crucial determinants of cumulative SOC mineralization. Structural equation modeling demonstrated that sludge addition, NO3−, NAG, ALP, and enzyme C:P positively impacted SOC mineralization, whereas dissolved organic carbon and BG had negative impacts. Conversely, incubation temperature negatively affected soil nitrogen mineralization, whereas NO3−, available phosphorus, and ALP contributed positively. Sludge addition and temperature indirectly modulated soil net nitrogen mineralization by altering soil chemical properties and enzyme activities. These findings underscore the role of SOC and nitrogen mineralization as indicators for evaluating soil nutrient retention capabilities.

Sources of nutrients fuelling post-flood phytoplankton biomass in a subtropical bay

Extreme rainfall from an ex-tropical cyclone caused a major flood event in the Logan River system in southeast Queensland, Australia. This resulted in a significant flood plume, containing nutrients and sediment, being discharged into the adjacent estuary/Bay system. The spatial extent of higher phytoplankton biomass (Chl a) matched the distribution of higher nutrient and sediment concentrations post-flood, suggesting nutrients fuelled phytoplankton production. Particulate nitrogen (PN) constituted over 50 % of total nitrogen in floodwaters, with lower proportions of dissolved inorganic nitrogen (DIN) and phosphate (PO4-P). Phytoplankton utilised DIN rapidly but may have maintained growth due to the release of ammonia from suspended sediments and microbial mineralisation of particulate organic nitrogen. Ammonia release from intertidal sediments contributed minimally (0.85 %) to daily phytoplankton nitrogen demands. Our study highlights the need to understand the fate of particulate nitrogen in coastal systems and its role in stimulating phytoplankton growth.

Root Exudates Promoted Microbial Diversity in the Sugar Beet Rhizosphere for Organic Nitrogen Mineralization

Rhizosphere environments play a vital role in the nutrient cycling of crops and soil organic nitrogen mineralization. Sugar beet is a highly nitrogen (N)-demanding crop, and it is necessary to explore the relationship between the sugar beet root exudates, the microbial community, and nitrogen utilization. In this study, a special separation method was employed to create rhizosphere (H3) and non-rhizosphere (H2 and H1) environments for sugar beet. After 50 d of cultivation in nearly inorganic-free soil, the microbial diversity and its correlation with root metabolites and N were examined. The results showed that in H3, the inorganic N content was over 23 times higher than in H1 and H2, with a 13.1% higher relative abundance of ammonia-oxidizing bacteria compared to H2 and a 32% higher abundance than H1. The relative abundance of nitrite-oxidizing bacteria was also 18.8% higher than in H1. Additionally, a significant positive correlation was observed between inorganic nitrogen content and serine (Ser) and isoleucine (Ile). The organic nitrogen content exhibited positive correlations with glycine (Gly), alanine (Ala), and tyrosine (Tyr) but displayed negative correlations with certain amino acids, organic acids, and glucose. The co-linearity network indicated that the microbial composition in H3 also exhibited higher node connectivity. It can be inferred that under the influence of sugar beet root exudates, the changes in the rhizosphere’s microbial diversity were more intricate, thereby benefiting soil nitrogen cycling and inorganic N accumulation. These findings provide profound insight into sugar beet soil organic nitrogen mineralization and contribute to the sustainable and environmentally friendly development of modern agriculture.

Macrogenomics reveal the effects of inter-cropping perilla on kiwifruit: impact on inter-root soil microbiota and gene expression of carbon, nitrogen, and phosphorus cycles in kiwifruit.

Intercropping systems can improve soil fertility and health, however, soil microbial communities and functional genes related to carbon, nitrogen and phosphorus cycling under the intercropping system of mesquite and perilla have not been studied. Therefore, in the present study, different planting densities and varieties of Perilla frutescens (L.) Britt and kiwifruit were used for intercropping, and changes in soil microbial communities and carbon, nitrogen, and phosphorus cycling genes in kiwifruit inter-roots under inter-cropping conditions were investigated by macro-genome sequencing technology. The results showed that intercropping with Perill caused a decrease in most soil nutrients, soil enzyme activities, and had a significant impact on the microbial (bacteria and fungi) diversity. Inter-cropping increased the relative abundance of the dominant bacterial phylum "Proteobacteria" and "Actinobacteria" by 47 and 57%, respectively, but decreased the relative abundance of the dominant fungal phylum "Chordata" and "Streptophyta" by 11 and 20%, respectively, in the inter-root soil of kiwifruit, and had a significant impact on the microbial (bacteria and fungi) diversity. In addition, inter-cropping could greatly increase the inter-root soil carbon sequestration (PccA, korA/B/C/D, fhs, and rbcl/s), carbon degradation (abfD), organic nitrogen mineralization (GDH2), denitrification (napA/B, nirB, norB), organic phosphorus mineralization (phop, phn), and inorganic phosphorus solubilization (gcd, ppk) gene abundance. The gene co-occurrence network indicated that soil korB, nirB, and gnd key functional genes for carbon, nitrogen, and phosphorus cycling in kiwifruit inter-root soils and their expression was up-regulated in the inter-cropping group. Structural equation (SEM) further showed that soil total nitrogen, organic matter, total carbon and acid phosphatase had significant effects on microbial diversity (p < 0.05) and soil carbon cycling gene korB and phosphorus cycling gene purH (p < 0.001), while korB and purH had positive effects on kiwifruit quality. In conclusion, intercropping perilla in kiwifruit orchards changed the structure of bacterial and fungal communities in the inter-root soil of kiwifruit, but I believe that intercropping perilla stimulates carbon degradation, leading to carbon emission and serious loss of soil nutrients, and that prolonged intercropping may adversely affect the quality of kiwifruit, and thus its limitations should be noted in future studies.

Soil Organic Nitrogen Mineralization and N2O Production Driven by Changes in Coastal Wetlands

AbstractPlant invasion and land reclamation have drastically transformed the landscape of coastal wetlands globally, but their resulting effects on soil organic nitrogen (SON) mineralization and nitrous oxide (N2O) production remain unclear. In this study, we examined 21 coastal wetlands across southern China that have undergone habitat transformation from native mudflats (MFs) to Spartina alterniflora marshes (SAs), and subsequently to earthen aquaculture ponds (APs). We determined the SON net mineralization rate and the presence of pertinent enzyme‐encoding genes, namely chiA, pepA, and pepN. The SON net mineralization rate increased by 46.7% following the conversion of MFs to SAs but decreased by 33.1% in response to the transformation of SAs to APs. Nevertheless, there was no significant difference in the estimated mineralization efficiency of soil microbes among the habitat types. The results of structural equation modeling showed that N‐mineralization gene abundance played a major role in regulating SON mineralization. Although less than 20% of the SON was estimated to be labile/semi‐labile, SON mineralization was important in sustaining soil N2O production, with 5.8% of the mineralized N being fed into N2O production. Overall, our findings showed that the presence of S. alterniflora increased both SON content and mineralization rate, which would in turn promote further proliferation of this exotic plant along the coast. The conversion of S. alterniflora marshes to APs partially mitigated the positive effects of exotic plant invasion on SON turnover.

Soil recalcitrant but not labile organic nitrogen mineralization contributes to microbial nitrogen immobilization and plant nitrogen uptake.

Soil organic nitrogen (N) mineralization not only supports ecosystem productivity but also weakens carbon and N accumulation in soils. Recalcitrant (mainly mineral-associated organic matter) and labile (mainly particulate organic matter) organic materials differ dramatically in nature. Yet, the patterns and drivers of recalcitrant (MNrec) and labile (MNlab) organic N mineralization rates and their consequences on ecosystem N retention are still unclear. By collecting MNrec (299 observations) and MNlab (299 observations) from 57 15N tracing studies, we found that soil pH and total N were the master factors controlling MNrec and MNlab, respectively. This was consistent with the significantly higher rates of MNrec in alkaline soils and of MNlab in natural ecosystems. Interestingly, our analysis revealed that MNrec directly stimulated microbial N immobilization and plant N uptake, while MNlab stimulated the soil gross autotrophic nitrification which discouraged ammonium immobilization and accelerated nitrate production. We also noted that MNrec was more efficient at lower precipitation and higher temperatures due to increased soil pH. In contrast, MNlab was more efficient at higher precipitation and lower temperatures due to increased soil total N. Overall, we suggest that increasing MNrec may lead to a conservative N cycle, improving the ecosystem services and functions, while increasing MNlab may stimulate the potential risk of soil N loss.

Effects of Different Ecological Restoration Pattern on Soil Organic Nitrogen Components in Alpine Sandy Land

Ecological restoration can improve soil fertility and have a significant impact on the soil nitrogen cycle. Nitrogen (N) is an essential nutrient element for plant growth and development, and also an important factor limiting soil productivity. As an important part of soil nitrogen, the composition and proportion of soil organic nitrogen components can directly or indirectly affect the difficulty of soil organic nitrogen mineralization and nitrogen availability, and then affect soil fertility. However, the current studies on soil nitrogen under ecological restoration mainly focus on nitrogen accumulation and nitrogen mineralization, while there are relatively few studies on changes in soil organic nitrogen components, especially in alpine regions. Therefore, in this study, three restoration pattern of mixed forage (MG), single shrub (SA) and shrub combination (SG) that have been restored continuously for 15 years in northwest Sichuan, China, were taken as the research object, and natural sandy land (CK) without manual intervention was taken as the control. Through field sampling and laboratory analysis, the characteristics of the soil nitrogen content and its proportion to soil total nitrogen (TN) under ecological restoration in alpine sandy land in northwest Sichuan, China, were investigated, and the correlation between the nitrogen content and soil physicochemical properties was analyzed. The results showed that the three ecological restoration patterns significantly increased the contents of acylated ammonium nitrogen (AMMN), acid-lyzed amino sugar nitrogen (ASN), acid-lyzed amino acid nitrogen (AAN), acid-lyzed unknown nitrogen (HUN), acid-lyzed total nitrogen (AHN) and non-acid-lyzed nitrogen (NHN) in soil, and the change trend was consistent with that of soil TN. Ecological restoration improved soil nitrogen mineralization and storage capacity by increasing the proportion of AAN, HUN and NHN to soil TN, and the effect was most obvious in the MG pattern 20–40 cm and SG pattern 40–60 cm soil layers. In general, except ASN, the soil nitrogen content was positively correlated with the soil TN, soil water content (SWC) and soil organic carbon (SOC), and negatively correlated with the soil bulk density (BD) and pH. The results of this study will help us to understand the supply capacity of soil nitrogen under ecological restoration and provide a scientific basis for the selection of an ecological restoration mode and the improvement of the restoration effect and efficiency in alpine sandy land.

The beneficial rhizobacterium Bacillus velezensis SQR9 regulates plant nitrogen uptake via an endogenous signaling pathway.

Nitrogen fertilizer is widely used in agriculture to boost crop yields. Plant growth-promoting rhizobacteria (PGPRs) can increase plant nitrogen use efficiency through nitrogen fixation and organic nitrogen mineralization. However, it is not known whether they can activate plant nitrogen uptake. In this study, we investigated the effects of volatile compounds (VCs) emitted by the PGPR strain Bacillus velezensis SQR9 on plant nitrogen uptake. Strain SQR9 VCs promoted nitrogen accumulation in both rice and Arabidopsis. In addition, isotope labeling experiments showed that strain SQR9 VCs promoted the absorption of nitrate and ammonium. Several key nitrogen-uptake genes were up-regulated by strain SQR9 VCs, such as AtNRT2.1 in Arabidopsis and OsNAR2.1, OsNRT2.3a, and OsAMT1 family members in rice, and the deletion of these genes compromised the promoting effect of strain SQR9 VCs on plant nitrogen absorption. Furthermore, calcium and the transcription factor NIN-LIKE PROTEIN 7 play an important role in nitrate uptake promoted by strain SQR9 VCs. Taken together, our results indicate that PGPRs can promote nitrogen uptake through regulating plant endogenous signaling and nitrogen transport pathways.

Isotopic compositions of organic and inorganic nitrogen reveal processing and source dynamics at septic influenced and undeveloped estuary sites

Historically, dissolved organic nitrogen (DON) has not been characterized in the nitrogen profiles of most estuaries despite its significant contribution to total nitrogen and projected increase in loading. The characterization of dissolved inorganic nitrogen (DIN) and DON processing from groundwater to surface water also remains unconstrained. This study attempts to fill in these knowledge gaps by quantifying the DON pool and potential sources in a semiarid, low inflow estuary (Baffin Bay, Texas) using stable isotope techniques. High NO3− and DON concentrations, and high δ15N-NH4+ (+55.0 ± 56.7 ‰), δ15N-NO3− (+23.9 ± 8.6 ‰) and δ15N-DON (+22.3 ± 6.5 ‰) were observed in groundwaters of a septic-influenced estuarine area, indicating coupled septic contamination and nitrification/denitrification. In contrast, groundwater of an undeveloped area provided evidence of inundation by bay water through high NH4+ concentrations and δ15N-NH4+ (+8.4 ± 3.0 ‰) resembling estuary porewater. NH4+ was the dominant nitrogen species in porewater of both areas and δ15N-NH4+ indicated production via organic nitrogen mineralization and dissimilatory nitrate reduction to ammonium. Surface water had similar nitrogen profiles (DON constituted ∼98 % of dissolved nitrogen pool) and potential source contributions, despite distinct nitrogen processing and profiles found in each water table. This was attributed to low nitrogen removal rates and prolonged mixing associated with long residence time. This study emphasizes the importance of DON in a low-inflow estuary and the isotopic approach to comprehensively examine both inorganic and organic N processing and sources serving as a guide to investigate N cycling in high DON estuaries globally.

Influence of vegetation on soil organic nitrogen composition and mineralization in a subtropical wetland

Studies have investigated the role of litter type on soil organic nitrogen (SON) mineralization and the resulting chemical composition in aerobic soils; however, the role of anaerobic conditions have been limitedly explored. We determined the SON chemical composition and N mineralization rate with depth of two different vegetation types (emergent aquatic vegetation, EAV and submerged aquatic vegetation, SAV) and prevailing flooded soil conditions in a subtropical treatment wetland. The treatment wetland provided similar water quality and climate conditions across the vegetation types. Three soil depths were sampled, the surficial floc, recently accreted soil, and soil present before constructing the treatment wetland. The surficial floc material created from emergent plants exhibited a mean total carbon (TC) and total N (TN) of 364 g C kg−1 and 27 g N kg−1 vs 185 g C kg−1and 12 g N kg−1 for submerged plants. Despite these differences, there were no significant differences in the proportion of N that was soil organic nitrogen (SON). Mean extractable ammonium was lower (95 mg N kg−1) in SAV systems and may be due to increased pH (~9) during the day compared to EAV systems (207 mg N kg−1). For the chemical composition, the N-associated aromatics comprised 4.8% of the SON in SAV areas compared with just 1.6% for EAV, which suggests an increased SON recalcitrance in SAV created floc. The difference in EAV and SAV chemical composition may be important for the long-term storage of SON and future studies should focus on additional environmental factors that favor the formation of stable recalcitrant SON.

A pulse of simulated root exudation alters the composition and temporal dynamics of microbial metabolites in its immediate vicinity

Root exudation increases the concentration of readily available carbon (C) compounds in its immediate environment. This creates ‘hotspots’ of microbial activity characterized by accelerated soil organic matter turnover with direct implications for nutrient availability for plants. However, our knowledge of the microbial metabolic processes occurring in the immediate vicinity of roots during and after a root exudation event is still limited.Using reverse microdialysis, we simulated root exudation by releasing a13C-labelled mix of low-molecular-weight organic C compounds at mm-sized locations in undisturbed soil. Combined with stable isotope tracing, we investigated the fine-scale temporal and spatial response of microbial metabolism, soil chemistry, and traced microbial respiration and uptake of exuded compounds.Our results show that a 9-h simulated root exudation pulse leads to i) a large local respiration event and ii) alteration of the temporal dynamics of soil metabolites over the following 12 day at the exudation spot. Notably, we observed a threefold increase in ammonium concentrations at 12 h and increased nitrate concentrations five days after the pulse. Moreover, various short-chain fatty acids (acetate, propionate, formate) increased over the following days, indicating altered microbial metabolic pathways and activity. Phospholipid and neutral lipid fatty acids (PLFAs, NLFAs) of all major microbial groups were significantly 13C-enriched within a 5 mm radius around the microdialysis probes, but not beyond. The highest relative 13C enrichment was observed in fungal NLFAs, indicating that a significant proportion of the exuded compounds had been incorporated into fungal storage compounds.Our findings indicate that the punctual release of low-molecular-weight organic C compounds into intact soil significantly changes microbial metabolism and activity in its immediate surroundings, enhancing mineralization of native organic nitrogen. This highlights the versatility of microbial metabolic pathways in response to rapidly changing C availability and their effectiveness in increasing nutrient availability near plant roots.

Microbial nitrogen mineralization is slightly affected by conversion from farmland to apple orchards in thick loess deposits

Organic nitrogen mineralization, indispensable to soil carbon and nitrogen cycles, is the largest contributor to nitrate reservoirs in deep vadose zones. The microbial nitrogen mineralization (MNM) within deep soils, particularly in regions with intensive agricultural activities and thick soil horizons, has been largely disregarded. As such, this study aims to address this knowledge gap by investigating the chiA-harboring microbial structure and network within nine 10-m profiles beneath cultivated farmland and two apple orchards. The results showed that apple orchards, compared to farmland, had considerable water deficit and nitrogen accumulation within deeper soil layers due to well-developed root systems and the overuse of chemical fertilizers. However, the chiA-harboring microbial diversity, composition, and abundance all exhibited significant variations with soil depths rather than being influenced by different land use types. Moreover, the diversity indices and gene abundances decreased with soil depths, and the related soil microbes included 19 phyla, 29 classes, 72 orders, 114 families, and 197 genera, with Actinobacteria and Proteobacteria being the two major bacterial phyla. The microbial co-occurrence network was simper beneath apple orchards. The chiA-harboring microorganisms within deep unsaturated zones were greatly influenced by the depth-dependent soil nutrients, such as total nitrogen, organic carbon, and available potassium. The limited plant root biomass and the inhibitory effects of dried soil layers both restricted the availability of carbon sources, which further interfered with the MNM processes within deep soils insignificantly. Therefore, despite the considerable plant-induced ecohydrological consequences, the depth-dependent MNM processes were slightly affected after the transformation from farmland to apple orchards within thick loess deposits. This study offers crucial insights into microbial dynamics of the deep biosphere, thereby contributing to our understanding of depth-dependent biogeochemical cycles within global deep unsaturated zones.

Active microbial taxa preferentially assimilate inorganic nitrogen in acidic upland soils using a 15N-DNA-SIP approach

Soil endogenous nitrogen is an essential source of crop nitrogen supply. Nitrogen assimilation is a vital transformation process that maintains nitrogen availability and promotes the mineralization of endogenous organic nitrogen in acidic soils. However, the dominant microbial populations that assimilate NH4+ and NO3− in acidic upland soils were unknown, and their response to long-term fertilization remained unclear. In this study, 15N-labeled NH4+ and NO3− were added to acidic upland soils characterized by long-term (32 years) differentiation in organic matter inputs. Glucose was added to facilitate nitrogen assimilation, and a nitrification inhibitor (dicyandiamide, DCD) was added to distinguish the contribution of NH4+ and NO3− assimilation. Results showed that soil inorganic N assimilation mainly occurred in the first week after inorganic N addition. Soil net inorganic N assimilation rates were 0.006–0.42 mg N kg−1 d−1 in the NH4+, NO3− and NH4++DCD treatments. The analysis of 15N-DNA-based stable isotope probing (SIP) found that the majority of inorganic N assimilation in our soils was conducted by a limited number of active microbial taxa, which accounted for 1.4%–2.0% of the entire bacterial community and 15.7%–28.8% of the fungal community. The dominant bacteria governing inorganic N assimilation in acidic upland soils included Bacillus, Burkholderia–Caballeronia–Paraburkholderia and Micrococcaceae. The primary fungi included Penicillium, Chaetomium, Aspergillus, and Fusarium. No obvious bias was detected in nitrogen assimilation rates and the dominant microbial taxa for NH4+-N and NO3−-N. Compared with unfertilized soil, long-term organic matter input decreased the dominating N assimilating microbial taxa. These findings demonstrate the feasibility of 15N-DNA-SIP technology in soil nitrogen cycling research and suggest the importance of active microbial taxa in acidic agricultural soil nitrogen retention and loss.