The Southeastern Hubei Ore Concentration Area (SHOCA) is located in the west section of the Middle and Lower Yangtze River Metallogenic Belt in China, and it is a significant copper and iron mining region in China. Here, 117 pieces of magnetotelluric array data were used to obtain a three-dimensional resistivity model of the SHOCA and to investigate the relationship between the deep electrical features and the genesis of mineral deposits. The model shows that the Qinling-Dabie Orogenic Belt exhibits high-resistivity characteristics, representing Mesozoic granites and high-pressure to ultra-high-pressure metamorphic rocks. There are several low-resistivity anomalies in the upper crust of the SHOCA, which are connected to the widespread low-resistivity anomaly in the middle-lower crust. Near the Yangxin-Changzhou Fault, there is evidence of an electrical gradient zone. The Xiangfan-Guangji Fault, located at the south margin of the Qinling-Dabie Orogenic Belt, also exhibits distinct high- and low-resistivity boundaries at the upper crust. However, the Yangtze Fault and the Tancheng-Lujiang Fault manifest as resistivity gradient zones at the lithospheric scale. These faults are connected the low-resistivity anomaly in the middle to lower crust, possibly serving as upwelling channels of deep thermal fluids, exerting control over shallow diagenesis and mineralization processes. The low-resistivity anomaly in the middle to lower crust of the SHOCA is explained as partial melting resulting from the mixing of crustal and mantle materials. These low-resistivity anomalies play a role as source components in the mineralization system, where mineral-rich hydrothermal fluids migrate upward along intra-basin faults, exerting control over the distribution of shallow mineral deposits.