Microbial Research Articles

Persistent microbial communities in hyperarid subsurface habitats of the Atacama Desert: Insights from intracellular DNA analysis.

Desert environments constitute one of the largest and yet most fragile ecosystems on Earth. Under the absence of regular precipitation, microorganisms are the main ecological component mediating nutrient fluxes by using soil components, like minerals and salts, and atmospheric gases as a source for energy and water. While most of the previous studies on microbial ecology of desert environments have focused on surface environments, little is known about microbial life in deeper sediment layers. Our study is extending the limited knowledge about microbial communities within the deeper subsurface of the hyperarid core of the Atacama Desert. By employing intracellular DNA extraction and subsequent 16S rRNA sequencing of samples collected from a soil pit in the Yungay region of the Atacama Desert, we unveiled a potentially viable microbial subsurface community residing at depths down to 4.20 m. In the upper 80 cm of the playa sediments, microbial communities were dominated by Firmicutes taxa showing a depth-related decrease in biomass correlating with increasing amounts of soluble salts. High salt concentrations are possibly causing microbial colonization to cease in the lower part of the playa sediments between 80 and 200 cm depth. In the underlying alluvial fan deposits, microbial communities reemerge, possibly due to gypsum providing an alternative water source. The discovery of this deeper subsurface community is reshaping our understanding of desert soils, emphasizing the need to consider subsurface environments in future explorations of arid ecosystems.

Microbial hyaluronic acid production in the 21 century: a roadmap toward high production, tailored molecular weight

Hyaluronic acid is a biopolymer that has gained attention from both researchers and the public since its discovery in 1934. In 2022, its global annual demand was 667 MT, with a market value of 9.4 billion dollars and an expected compound growth rate of 7.7% from 2024 and 2030. Such popularity lies in its many applications, which ranges from pharmaceutical to Tissue Engineering. Its molecular weight (MW) determines which application hyaluronic acid is better suited for: high MW (over 1 MDa) is used in medical applications such as osteoarthritis and ophthalmology, and low MW (less than 0.05 MDa) are suited for moisturizing cosmeceuticals. This makes hyaluronic acid molecular weight an important parameter for its production. The first industrial process was based on extraction from rooster combs. However, it shifted toward microbial production with Streptococcus zooepidemicus. Studies focus on improving its production and tailoring its molecular weight by accessing optimum temperature, pH, aeration, agitation, carbon, and nitrogen sources concentration and origin. his review aims to provide an overview of the current knowledge on the effects of metabolic and environmental factors in microbial hyaluronic acid production. The review shows that there has been extensive research in optimizing cultivation medium composition, temperature, pH, and aeration between 2018 and 2023, but further studies are required to optimize the metabolism of S. zooepidemicus towards maximum biopolymer production and molecular weight.

Microscale advection governs microbial growth and oxygen consumption in macroporous aggregates.

Most microbial life on Earth is found in localized microenvironments that collectively exert a crucial role in maintaining ecosystem health and influencing global biogeochemical cycles. In many habitats such as biofilms in aquatic systems, bacterial flocs in activated sludge, periphyton mats, or particles sinking in the ocean, these microenvironments experience sporadic or continuous flow. Depending on their microscale structure, pores and channels through the microenvironments permit localized flow that shifts the relative importance of diffusive and advective mass transport. How this flow alters nutrient supply, facilitates waste removal, drives the emergence of different microbial niches, and impacts the overall function of the microenvironments remains unclear. Here, we quantify how pores through microenvironments that permit flow can elevate nutrient supply to the resident bacterial community using a microfluidic experimental system and gain further insights from coupled population-based and computational fluid dynamics simulations. We find that the microscale structure determines the relative contribution of advection vs diffusion, and even a modest flow through a pore in the range of 10 µm s-1 can increase the carrying capacity of a microenvironment by 10%. Recognizing the fundamental role that microbial hotspots play in the Earth system, developing frameworks that predict how their heterogeneous morphology and potential interstitial flows change microbial function and collectively alter global scale fluxes is critical.IMPORTANCEMicrobial life is a key driver of global biogeochemical cycles. Similar to the distribution of humans on Earth, they are often not homogeneously distributed in nature but occur in dense clusters that resemble microbial cities. Within and around these clusters, diffusion is often assumed as the sole mass-transfer process that dictates nutrient supply and waste removal. In many natural and engineered systems such as biofilms in aquatic environments, aggregates in bioremediation, or flocs in wastewater treatment plants, these clusters are exposed to flow that elevates mass transfer, a process that is often overlooked. In this study, we show that advective fluxes can increase the local growth of bacteria in a single microenvironment by up to 50% and shape their metabolism by disrupting localized anoxia or supplying nutrients at different rates. Collectively, advection-enhanced mass transport may thus regulate important biogeochemical transformations in both natural and engineered environments.

Concurrent removal of carbon and nutrients in a one-stage dual internal circulation airlift A2O bioreactor from milk processing industrial wastewater: Process optimization, sludge characteristics and operating cost evaluation

In this work, a one-stage dual internal circulation airlift anaerobic/anoxic/aerobic (DCAL-A2O) bioreactor was continuously operated for concurrent removal of nutrients and organics from milk processing wastewater (MPW). Special configuration of the airlift A2O bioreactor created possibility of the formation of desired anaerobic, anoxic and aerobic zones in a single unit. The process functionality of the bioreactor was examined under three influential operating variables i.e. hydraulic retention time (HRT; 7–15 h), air flow rate (AFR; 1–3 L/min) and aerobic volume ratio (AVR; 0.324–0.464). The optimum region was identified at HRT of 13h, AFR of 2L/min and AVR of 0.437, leading to TCOD, TN and TP removal efficiency of 94.5 %, 59.6 %, and 62.2 %, respectively, and effluent turbidity of 8 NTU. The impact of feed biodegradability on the process performance of the bioreactor treating the MPW, soft drink wastewater (SDW) and soybean oil plant wastewater (SOW) was also assessed. From the results, the feed characteristics affected significantly the nutrients removal. Moreover, the feeding location played an effective role in the nutrient removal while treating the MPW at optimum operating conditions. In this study, the change in residual organic matters as soluble microbial products (SMP) was monitored at various operating conditions. In addition, the impact of SMP extracted from sludge, extracellular polymeric substances (EPS) comprising of loosely bound EPS (LB-EPS) and tightly bound EPS (TB-EPS) was analyzed on sludge characteristics as bio-flocculation and settleability properties. According to the obtained data, the increase in operating variables led to the reduction in contents of effluent SMP, sludge SMP, LB-EPS, turbidity, and SVI, thereby, the enhancement in the sludge characteristics. Meanwhile, analysis of microbial communities verified the presence of various functional bacterial species. The cost operating evaluation confirmed the cost effectiveness of the airlift A2O bioreactor in reduction of energy consumption for the MPW treatment.

Влияние нитрапирина на микробиоту и эмиссию парниковых газов из побочных продуктов животноводства

The livestock by-products (LBP) using as fertilizers are characterized by such unfavorable environmental characteristics as emissions of greenhouse gases (N2O, CO2, CH4) and the presence of a specific microbiota leading to soil and water biological contamination. The waste processing by nitrapyrin reduces the negative environmental impact of LBP. Currently, nitrapyrin is used as a nitrogen fertilizer stabilizer that reduces nitrogen losses by direct inhibition of soil microorganisms (MO) oxidizing ammonium nitrogen to nitrate. It was found that 0.05 g/L nitrapyrin application to the liquid pig manure effluents decreases the CH4 and CO2 emissions, as well as the species diversity and the number of opportunistic pathogens that promote the transfer of antibiotic resistance genes into natural environments. The number of such MO as Klebsiella sp., Proteus spp., Bacteroides sp., Pseudomonas spp., Candida sp. decreased by 2–4 orders of magnitude due to nitrapyrin. Only anaerobic bacteria of the genus Clostridium and aerobic mold fungi of the genus Aspergillus showed the resistance to the appropriate reagent, the number of the above MO remained almost unchanged in the nitrapyrin variants. The most significant decrease in CO2 emission (2–5 times compared to control) was observed in the first 3–4 days after the nitrapyrin application. The CH4 emission in nitrapyrin variants was lower than in the control during the whole observation period (13 days). The obtained experimental data can be used in the development of reagent formulations to improve microbiological characteristics and to reduce greenhouse gases emission from manure collection systems of livestock enterprises.

Inflammatory response in dairy cows caused by heat stress and biological mechanisms for maintaining homeostasis.

Climate change increases global temperatures, which is lethal to both livestock and humans. Heat stress is known as one of the various livestock stresses, and dairy cows react sensitively to high-temperature stress. We aimed to better understand the effects of heat stress on the health of dairy cows and observing biological changes. Individual cows were divided into normal (21-22 °C, 50-60% humidity) and high temperature (31-32 °C, 80-95% humidity), respectively, for 7-days. We performed metabolomic and transcriptome analyses of the blood and gut microbiomes of feces. In the high-temperature group, nine metabolites including linoleic acid and fructose were downregulated, and 154 upregulated and 72 downregulated DEGs (Differentially Expressed Genes) were identified, and eighteen microbes including Intestinimonas and Pseudoflavonifractor in genus level were significantly different from normal group. Linoleic acid and fructose have confirmed that associated with various stresses, and functional analysis of DEG and microorganisms showing significant differences confirmed that high-temperature stress is related to the inflammatory response, immune system, cellular energy mechanism, and microbial butyrate production. These biological changes were likely to withstand high-temperature stress. Immune and inflammatory responses are known to be induced by heat stress, which has been identified to maintain homeostasis through modulation at metabolome, transcriptome and microbiome levels. In these findings, heat stress condition can trigger alteration of immune system and cellular energy metabolism, which is shown as reduced metabolites, pathway enrichment and differential microbes. As results of this study did not include direct phenotypic data, we believe that additional validation is required in the future. In conclusion, high-temperature stress contributed to the reduction of metabolites, changes in gene expression patterns and composition of gut microbiota, which are thought to support dairy cows in withstanding high-temperature stress via modulating immune-related genes, and cellular energy metabolism to maintain homeostasis.

Euendolith borings in Chancelloria and Nisusia from the middle Cambrian (Miaolingian) of North Greenland (Laurentia).

Borings of microscopic organisms (euendoliths) are described from the Henson Gletscher Formation (middle Cambrian, Miaolingian Series, Wuliuan Stage) of Peary Land, North Greenland (Laurentia). Partially phosphatised sclerites of Chancelloria and valves of the brachiopod Nisusia reveal abundant casts of borings following dissolution of skeletal calcium carbonate in weak acetic acid. Threads referred to Scolecia dominate, occurring together with coccoids (Planobola) and the branching Fascichnus, in a suite comparable to a lower Cambrian assemblage from the Maidiping Formation of Sichuan, China.

Abstract 2441: Higher levels of LPS in blood plasma as potential novel biomarker for cancer risk in Puerto Rican people living with HIV

Abstract Background: People living with HIV (PWH) have a significantly higher risk of developing cancers than people without HIV (PWOH), even with suppressive antiretroviral therapy. Puerto Rico (PR) is considered a high-risk group disproportionately affected by HIV and a priority group for cancer prevention strategies. Dysbiosis of the human microbiota can contribute to persistent inflammation by upregulating TGF-β (microbial-induced oncogenesis biomarker), which can promote the translocation of microbial products into the bloodstream, increasing cancer risk at local and distant sites. However, the relationship between TGF-β, and microbial products such as lipopolysaccharide (LPS) and short-chain fatty acids (SCFA) in relation to HIV infection is poorly understood, therefore we aimed to quantify the levels of LPS and SCFA in the blood plasma of PWH vs. PWOH and investigated their relationship with cancer risk measured by TGF-β. Methods: Blood samples, sociodemographic, and clinical data from 80 adults (50 PWH and 30 PWOH) were collected. PWH were virally suppressed (<50 copies/mL) with a median CD4 count of 699.8 cells/µL. We measured TGF-β, LPS, and soluble CD14 (sCD14. marker of innate immune activation and microbial translocation) using immunoassays. SCFA (acetate, butyrate, and propionate) were measured using gas chromatography followed by mass spectrometry. Differences in the median levels of TGF-β, LPS, and SCFAs were evaluated using a Mann-Whitney test. We assessed the effects of LPS, SCFAs, and HIV infections in relationship with levels of TGF-β using multivariate fixed-effects regression analysis in R-statistical software. Results: PWH had significantly higher levels of TGF-β (4397 pg/mL vs. 1121 pg/mL, p=0.017), higher levels of LPS (38.97 pg/mL vs. 19.26 pg/mL, p<0.001), higher levels of sCD14 (1326 pg/mL vs. 1137 pg/mL, p=0.007), and significantly lower levels of butyrate (84.5 ng/mL vs. 62.0 ng/mL, p<0.001). Higher levels of TGF-b were associated with higher levels of LPS (rho=0.38, p=0.017) and higher levels of sCD14 (rho=0.27, p=0.016) these relationships remain significant after adjusting for HIV status (p<0.001). Conclusion: Our findings suggest that microbial products in blood plasma can contribute to higher cancer risk in Puerto Rican PWH and may represent potential novel biomarkers for cancer prevention. Citation Format: Jurelis Torres Reyes, Tanner L. Shull, Gabriel Borges-Velez, Veronica S. Sanchez Gonzalez, Jeannette L. Salgado Montilla, Josue Perez Santiago. Higher levels of LPS in blood plasma as potential novel biomarker for cancer risk in Puerto Rican people living with HIV [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 2441.

Abstract 7475: The contribution of the oral bacteriome and mycobiome in cancer risk in people with HIV in Puerto Rico

Abstract Although under highly effective antiretroviral therapy, people with HIV (PWH) still experience an increased risk of developing cancer compared to people without HIV (PWOH). Dysbiosis of the oral microbiota in PWH can contribute to persistent inflammation and cancer risk. We previously showed higher levels of inflammation in saliva of PWH measured by TGF-β1 and IL-2. In addition, microbial products such as short-chain fatty acids (SCFA) can regulate the transcription of immune-related genes, particularly those necessary for the innate immune response to pathogens. In this study, we characterized the composition of the oral bacteriome and mycobiome in saliva of Puerto Rican PWH and PWOH, and analyzed these data in relation to markers of inflammation and cancer risk in saliva. Saliva, sociodemographic, and clinical data from 100 adults were collected (50 PWH and 50 PWOH). PWH were virally suppressed (<50 copies/mL) and had a median CD4 count of 699.8 cells/µL. We sequenced the 16S rDNA and the ITS in extracted DNA from saliva to characterize and quantify the bacterial and fungal communities, respectively. Furthermore, measurement of inflammatory markers (TGF-β1, IL-2, and IL-8) in saliva was performed using quantitative immunoassays. Microbiome data was processed using Qiime2, and statistical analysis was carried out using R-statistical software. Biological pathways associated to changes in the microbiome were inferred using PiCRUST2. PWH showed lower alpha diversity in the oral bacteriome (Observed OTUs: p=0.02, Faith: p=0.03) and oral mycobiome (Shannon: p=0.02) when compared to PWOH. In a multivariate analysis, lower alpha diversity in the bacteriome was associated with biological sex and HIV status. Lower alpha diversity in the oral bacteriome was associated with higher levels of acetate (r=-0.38, p<0.001) and lower levels of IL-8 (r= 0.21, p= 0.056) in saliva independent of HIV status. Taxonomic analyses showed PWH had a significantly lower abundance of Porphyromonas, Peptostreptococcus, Oribacterium, Parvimonas, Leptotrichia, Fusobacterium, Eubacterium, Dialister, and Alkalibacter genera of bacteria but there not significant changes in taxonomy in the oral mycobiome. Biological processes significantly affected by dysbiosis of the oral mycobiome include cytosolic and mitochondrial NADPH production, amino acid and sugar degradation, and phospholipid remodeling. Dysbiosis of both the oral bacteriome and mycobiome occur in HIV infection, which can contribute to chronic inflammation. However, the bacteriome and mycobiome may have different biological mechanisms, which suggest different roles in increasing cancer risk in Puerto Rican PWH. These findings provide more information regarding the oral health in people with HIV and may contribute to innovative cancer prevention strategies and screening guidelines for this high-risk population. Citation Format: Veronica Sofia Sanchez Gonzalez, Yakshi N. Ortiz-Maldonado, Gabriel Borges-Vélez, Tanner L. Shull, Jeannette L. Salgado-Montilla, Josué Pérez-Santiago1. The contribution of the oral bacteriome and mycobiome in cancer risk in people with HIV in Puerto Rico [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 7475.

Aetiological agents of pneumonia among HIV and non-HIV infected children in Ghana: A case-control study.

Pneumonia is the leading cause of death in children, however, the microbial aetiology of pneumonia is not well elucidated in low- and middle-income countries. Our study was aimed at determining the microbial aetiologies of childhood pneumonia and associated risk factors in HIV and non-HIV infected children. We conducted a case-control study that enrolled children with pneumonia as cases and non-pneumonia as controls from July 2017 to May 2020. Induced sputum and blood samples were investigated for microbial organisms using standard microbiological techniques. DNA/RNA was extracted from sputum samples and tested for viral and bacterial agents. Four hundred and four (404) subjects consisting of 231 (57.2%) cases and 173 (42.8%) controls were enrolled. We identified a significant (p = 0.011) proportion of viruses in cases (125; 54.1%, 95%CI: 47.4-60.7) than controls (71; 33.6%, 95%CI: 33.6-48.8) and these were mostly contributed to by Respiratory Syncytial Virus. Staphylococcus aureus (16; 4.0%), Klebsiella spp. (15, 3.7%) and Streptococcus pneumoniae (8, 2.0%) were the main bacterial agents identified in sputum or induced sputum samples. HIV infected children with viral-bacterial co-detection were found to have very severe pneumonia compared to those with only viral or bacterial infection. Indoor cooking (OR = 2.36; 95%CI:1.41-3.96) was found to be associated with pneumonia risk in patients. This study demonstrates the importance of various microbial pathogens, particularly RSV, in contributing to pneumonia in HIV and non-HIV paediatric populations. There is a need to accelerate clinical trials of RSV vaccines in African populations to support improvement of patient care.

Diversity, distribution, and bioprospecting potentials of carotenogenic yeast from mangrove ecosystem.

Microbial production of carotenoids has gained significant interest for its cost-effectiveness and sustainable nature. This study focuses on 47 red-pigmented yeasts isolated from sediments and plant parts of 13 species of mangrove trees. The relative abundance and distribution of these yeasts varied with plant species and plant parts. The highest number of red yeasts was associated with the mangrove plant Avicennia officinalis (32%). Notably, the leaves harbored the highest percentage (45%) of carotenogenic yeasts, and definite compartmentalization of these yeast species was noticed in mangrove plant parts. All the isolates were molecularly identified and they belonged to the genera of Rhodotorula, Rhodosporidiobolus, and Cryptococcus. The diversity of the pigmented yeasts isolated from A. officinalis was found to be the greatest. Among these strains, Rhodotorula mucilaginosa PV 8 was identified as the most potent producer of carotenoid pigment. Under optimized conditions of physical parameters -28°C, pH 5, and 15% salinity led to biomass production of 9.2 ± 0.12g/L DCW and a pigment yield of 194.78µg/g. The pigment produced by PV 8 was identified as β-carotene by thin layer chromatography (TLC) and Fourier transform infrared spectroscopy (FT-IR). This β-carotene demonstrated strong antioxidant activity. Moreover, the carotenoid displayed promising antibacterial activity against multidrug-resistant organisms, including Aeromonas sp. and Vibrio sp. In vitro studies revealed the probiotic traits of PV 8. The cytotoxicity of R. mucilaginosa PV 8 was assessed in the invertebrate model Artemia salina and the survival rate showed that it was non-toxic. Furthermore, the β-carotene from PV 8 demonstrated the ability to transfer its vibrant color to various food products, maintaining color stability even under varied conditions. This research underscores the potential of R. mucilaginosa PV 8, as a versatile and valuable resource for the production of carotenoids.

Abstract 2976: The potential use of butyrate and propionate to inhibit oncogenic phenotypes in oral squamous cell carcinoma and triple negative breast cancer

Abstract Background Oral squamous cell carcinoma (OSCC) and triple-negative breast cancer (TNBC) are aggressive cancers with low survival rates, particularly in Hispanics. Since the underpinning mechanisms of oncogenesis for both OSCC and TNBC are multifactorial, the development of novel targeted therapies is limited. The tumor microbiome has been shown to modulate the microenvironment. The microbial product short-chain fatty acids (SCFA) may represent a putative target for treatment as they can potentially inhibit cell growth, proliferation, migration, and induce morphologic changes in cancer cells. We evaluated the impact of the SCFAs butyrate, acetate, and propionate on the oncogenic phenotypes of OECM-1 and MDA-231 cell line models for OSCC and TNBC respectively. Methods OECM-1 and MDA-231 cell lines were cultured in RPMI-1640 medium supplemented with 10% FBS. Cytotoxicity was determined using an alamarBlue assay by treating the cells with SCFA in a series of 7 concentrations starting at 125 mM (1:2 dilution factor) for 24, 48, and 72 hours (h). Proliferation quantification was performed using trypan blue dye after treatment with SCFA for 24h, 48h and 72h. Migration and invasion were measured after treatment for 24h with SCFAs. Comparative analysis of our results was performed using GraphPad Prism v10. Results Higher concentrations of all SCFA decreased cell viability in OSCC and TNBC at all time points. In OECM-1 cells, the average inhibitory concentration of 50% (IC50) was 3mM for butyrate, 382mM for acetate, and 64mM for propionate while in MDA-MB-231 cells, the average IC50 was 4.3mM for butyrate, 462mM for acetate, and 20mM for propionate. Both OECM-1 and MDA-MB-231 cells treated with butyrate and propionate at 5mM resulted in a slower migration after 24h of treatment. Additionally, there was a significant reduction of cell number and proliferation rate after 48h and 72h of butyrate treatment at the concentrations 1mM (p=0.0425) and 5mM (p=0.0007) in OSCC. Conclusions Our results show that butyrate and propionate can reduce oncogenic phenotypes in OSCC and TNBC and may represent a potential target for the development of alternative treatment strategies for both cancers. Future work includes measuring the impact of these SCFA in epithelial-mesenchymal transition, loss of adhesion, and cell death. Citation Format: Angel J. Amaral Maisonet. The potential use of butyrate and propionate to inhibit oncogenic phenotypes in oral squamous cell carcinoma and triple negative breast cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 2976.

Diabetes Mellitus and Bacterial Infections: A Review of Main Infections in DM Patients

Millions of single-celled microscopic organism called bacteria reside within the human body. Numerous infectious diseases in humans are caused by some of these pathogen bacteria. One of the major risk factors for bacterial infections is diabetes mellitus. Bacterial infections and diabetes may have a reciprocal relationship in which some illnesses exacerbate insulin resistance. Diabetes may occur as a result of bacteria in the digestive system. Any organ in a human body can become infected by bacteria. The respiratory tract, gastrointestinal tract, urinary tract, skin, and soft tissues are the most frequently infected areas with diabetes. Uncontrolled hyperglycemia increases the risk of bacterial infections by impairing innate and adaptive immune responses. Furthermore, skin ulceration can result from long-term diabetic consequences such peripheral vascular disease and neuropathy (sensorimotor and autonomic). These conditions can also lead to secondary bacterial infections.

Uses of Microorganisms in The Recovery of Oil and Gas

Microscopic organisms are the only single-celled organisms proposed for the advancement of techniques for Estimation of Oil Recovery (EOR) because they have numerous desirable properties, including a simple structure and an unsustainable growth rate when supplied with vital nutrients, resulting in the release of metabolic chemicals like Aerosols, acids, minimum lubricants, surfactants, and polymers. Clostridium acetobutylicum was isolated from intensive rice cultivation soil and has the ability to use polysaccharides such as starch and carboxylmethyl cellulose to produce biobutanol, while Desulfovibrio hydrocarbonoclasticus was isolated from marine sediment in Iraq and grows in anaerobic synthetic seawater medium with the addition of a trace element solution. These bacteria can also withstand difficult conditions High salinity, high pressure, and high temperature play roles and contribute to underground geological formations. An aqueous mixture of nutrients, Clostridium acetobutylicum, Desulfovibrio hydrocarbonoclasticus, and molasses with nutrient and bacterial spore injection into a reservoir. As a result, these microorganisms are capable of considerable catalytic reactions. production of a diverse spectrum of products (biosolvents, bioacids, biogases, and biosurfactants) from relatively simple nutritional compounds, multiply vigorously under favourable conditions, and have resulted in increased oil release from reservoir rock. The well began producing 70 days after the medication was started. 80 to 90 days after the injection began, relatively brief polyunsaturated fats, Carbon dioxide, and residues of ethanol, 1-butanol, and acetone were detected. Because of their highly resistant endospores, Clostridium are the most ideal of the several microbes used in MEOR (Microbial enhanced oil recovery). Desulfovibrio strains capable of producing biosurfactants in situ, which are beneficial to the MEOR process, are also valuable. Nutrients are often supplied as fermentable carbs to promote microbial metabolism.

A novel microbial community restructuring strategy for enhanced hydrogen production using multiple pretreatments and CSTR operation

To achieve rapid enrichment of the targeted hydrogen-producing bacterial population and reconstruction of the microbial community in the biological hydrogen-producing reactor, the activated sludge underwent multiple pretreatments using micro-aeration, alkaline treatment, and heat treatment. The activated sludge obtained from the multiple pretreatments was inoculated into the continuous stirred tank reactor (CSTR) for continuous operations. The community structure alteration and hydrogen-producing capability of the activated sludge were analyzed throughout the operation of the reactor. We found that the primary phyla in the activated sludge population shifted to Proteobacteria, Firmicutes, and Bacteroidetes, which collectively accounted for 96.69% after undergoing several pretreatments. This suggests that the multiple pretreatments facilitated in achieving the selective enrichment of the fermentation hydrogen-producing microorganisms in the activated sludge. The CSTR start-up and continuous operation of the biological hydrogen production reactor resulted in the reactor entering a highly efficient hydrogen production stage at influent COD concentrations of 4000 mg/L and 5000 mg/L, with the highest hydrogen production rate reaching 8.19 L/d and 9.33 L/d, respectively. The main genus present during the efficient hydrogen production stage in the reactor was Ethanoligenens, accounting for up to 33% of the total population. Ethanoligenens exhibited autoaggregation capabilities and a superior capacity for hydrogen production, leading to its prevalence in the reactor and contribution to efficient hydrogen production. During high-efficiency hydrogen production, flora associated with hydrogen production exhibited up to 46.95% total relative abundance. In addition, redundancy analysis (RDA) indicated that effluent pH and COD influenced the distribution of the primary hydrogen-producing bacteria, including Ethanoligenens, Raoultella, and Pectinatus, as well as other low abundant hydrogen-producing bacteria in the activated sludge. The data indicates that the multiple pretreatments and reactor's operation has successfully enriched the hydrogen-producing genera and changed the community structure of microbial hydrogen production.

Advanced oxidation process/coagulation coupled with membrane distillation (AOP/Coag-MD) for efficient ammonia recovery: Elucidating biofouling control performance and mechanism

The inadequate understanding of the biofouling formation mechanism and the absence of effective control have inhibited the commercial application of membrane distillation (MD). In this study, an advanced oxidation process (AOP)/coagulation-coupled (Coag) membrane distillation system was proposed and exhibited the potential for MD ammonia recovery (recovery rate: 94.1%). Extracellular polymeric substances (EPS) and soluble microbial products (SMP) components such as humic acid and tryptophan-like proteins were disrupted and degraded in the digestate. The curtailment and sterilizing efficiency of AOP on biofilm growth was also verified by optical coherence tomography (OCT) in situ real-time monitoring and confocal laser scanning microscopy (CLSM). Peroxymonosulfate (PMS) was activated to generate sulfate (SO4•-) and hydroxyl radicals (HO•), which altered the microbial community. After oxidative treatment, 16 S rRNA sequencing indicated that the dominant phylum of the microbial community evolved into Firmicutes. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis demonstrated that free radicals produced by PMS could disrupt cells' signaling molecules and interactions. In conjunction with these analyses, the mechanisms of response to free radical attack by Gram-negative bacteria, Gram-positive bacteria, and fungi were revealed. This research provided new insights into the field of membrane fouling control for membrane technology resource recovery processes, broadening the impact of AOP applications on microbiological response and fate in the environment.

Recovery mechanism of heterotrophic ammonia assimilation system under chromium hexavalent stress

Heterotrophic ammonia assimilation (HAA), an innovative technology for high-salinity wastewater treatment, demonstrates self-recovery capability following Cr (VI) stress. This study investigated the inhibitory effects and self-restoration mechanisms of Cr (VI) at various stress levels. The removal efficiencies of NH4+-N and Cr (VI) in the HAA gradually decreased with increasing influent Cr (VI) concentration. Exposure to Cr (VI) increased the amounts of high-molecular-weight proteins in soluble microbial products and stimulated the generation of extracellular polymeric substances. Heterotrophic functional microorganisms with Cr (VI) tolerance, such as Marinobacter and Planktosalinus, were enriched. An assimilation pathway gene (glnA) and a Cr (VI)-related gene (atoB) were also upregulated. After ceasing Cr (VI) addition, the HAA system demonstrated a 17.1 % increase in the removal efficiency of NH4+-N, which was attributable to its self-recovery ability. This study provides a scientific and theoretical foundation for the HAA process in resisting the impact of heavy-metal-containing wastewater and self-recovery.

Algae removal and algal organic matter chemistry modulated by KMnO4-PAC in simulated karst water

In this study, we examined the modulation of algae removal and algal organic matter (AOM) chemistry by potassium permanganate and poly-aluminum chloride (KMnO4-PAC) in simulated karst water. Specifically, we verified the compositional changes of AOM sourcing from Chlorella sp. and Pseudanabaena sp. in response to the presence of divalent ions (Ca2+ and Mg2+). Aromatic protein and soluble microbial products were identified as the primary AOM components. Divalent ions accelerated dissolved organic carbon (DOC) and UV254 removal, particularly with Pseudanabaena sp. greater than Chlorella sp. (P < 0.05). Surface morphology analysis manifested that the removal of filamentous Pseudanabaena sp. was more feasible in comparison to globular Chlorella sp.. Our results highlight the significance of divalent ions in governing chemical behaviors and subsequent removal of both algae and AOM. This study upscales the understanding of the interactions among divalent ions, algae and AOM during preoxidation and coagulation process in algae-laden karst water.

Enhanced Mineral Preservation Rather Than Microbial Residue Production Dictates the Accrual of Mineral‐Associated Organic Carbon Along a Weathering Gradient

AbstractMineral preservation and microbial residue production are vital for the accumulation of mineral‐associated organic carbon (MAOC) in soils. However, their relative importance and interactive effects remain unclear. Here MAOC content and composition are analyzed in tandem with soil mineral and microbial attributes along a weathering gradient on a volcanic soil sequence. We find that MAOC content increases with increasing mineral weathering states, accompanied by increasing microbial contribution to MAOC. Mineral attributes rather than microbial physiological traits are strongly related to MAOC contents, suggesting that weathering‐enhanced mineral preservation capacity overrides microbial residue production in governing MAOC accumulation by increasing reactive minerals. Furthermore, mineral attributes have a strong interactive effect with microbial traits on MAOC accumulation and composition, likely related to increasing fungal abundance in the microbial community with increasing weathering. These findings highlight that mineral weathering may effectively boost persistent SOC in synergy with microbial conversion in the long term.

Decryption of the survival "black box": gene family expansion promotes the encystment in ciliated protists.

Encystment is an important survival strategy extensively employed by microbial organisms to survive unfavorable conditions. Single-celled ciliated protists (ciliates) are popular model eukaryotes for studying encystment, whereby these cells degenerate their ciliary structures and develop cyst walls, then reverse the process under more favorable conditions. However, to date, the evolutionary basis and mechanism for encystment in ciliates is largely unknown. With the rapid development of high-throughput sequencing technologies, genome sequencing and comparative genomics of ciliates have become effective methods to provide insights into above questions. Here, we profiled the MAC genome of Pseudourostyla cristata, a model hypotrich ciliate for encystment studies. Like other hypotrich MAC genomes, the P. cristata MAC genome is extremely fragmented with a single gene on most chromosomes, and encodes introns that are generally small and lack a conserved branch point for pre-mRNA splicing. Gene family expansion analyses indicate that multiple gene families involved in the encystment are expanded during the evolution of P. cristata. Furthermore, genomic comparisons with other five representative hypotrichs indicate that gene families of phosphorelay sensor kinase, which play a role in the two-component signal transduction system that is related to encystment, show significant expansion among all six hypotrichs. Additionally, cyst wall-related chitin synthase genes have experienced structural changes that increase them from single-exon to multi-exon genes during evolution. These genomic features potentially promote the encystment in hypotrichs and enhance their ability to survive in adverse environments during evolution. We systematically investigated the genomic structure of hypotrichs and key evolutionary phenomenon, gene family expansion, for encystment promotion in ciliates. In summary, our results provided insights into the evolutionary mechanism of encystment in ciliates.