Soil Microbiology Research Articles

Effective Microbial Strategies to Remediate Contaminated Agricultural Soils and Conserve Functions

The growing global emphasis on sustainable agriculture has brought increased attention to the health and productivity of soils, especially through the lens of soil microbiology. Microbial communities in soil are essential for nutrient cycling, organic matter decomposition, and maintaining overall soil health. However, agricultural practices, including synthetic fertilizers and intensive farming, have led to short time impacts in these microbial ecosystems, potentially threatening soil fertility and environmental quality. Agricultural expansion and food production generate waste and chemical inputs, such as heavy metals, pesticides, and herbicides, leading to significant environmental contamination. This scenario requires the implementation of remediation strategies that are both sustainable and energy efficient. In this context, microbiological processes present a much promising approach to mitigating the environmental impacts of soil pollution. Techniques such as bioremediation, which harness the natural metabolic capabilities of soil microorganisms, and bioaugmentation, which involves the introduction of specific microbial strains to increase degradation processes, are being explored. These approaches are vital for restoring soil health, contributing to environmental conservation and soil biodiversity, improving nutrient cycling, and promoting long-term agricultural productivity.

Responses of microbial communities to the addition of different types of microplastics in agricultural soils

A 90-day soil incubation study was performed to investigate impacts of four types (PE, PP, PVC and PET) of microplastics (MPs) on the physicochemical properties, nutrient contents, enzyme activities, and microbial community structure and diversity of agricultural soils. Effects of the four microplastic types and addition ratios on the microbiology of the agricultural soils were significant. With the addition of MPs, there was a positive correlation between physicochemical properties, nutrients (AN, AP, AK) and enzyme activities (CAT, Urease, ACP, SUC), which were all decreased to some extent. Overall PE and PVC surfaces were the roughest and had the greatest impact on soil physicochemical properties, nutrients and enzyme activities. The changes in soil microbial α-diversity were not significant (P > 0.05), but, PP and PVC led to an increase in community diversity and abundance. Clearly, the four types of the MPs reduced the physicochemical properties, nutrient content, enzyme activity and microbial community, and thus significantly affected the microbiology of the farmland soils.

Impact of dual Bt-transgenic maize (2A7) on soil microbial communities and enzyme activities: A comparative study with control variety Z58

The impacts of transgenic crops on soil microbiology and fertility are critical in determining their biosafety. While transgenic crops can alter soil microbes, their effects are often context-dependent; therefore, the ecological importance of these changes remains a topic of ongoing research. Using high-throughput sequencing, we investigated the effects of Bacillus thuringiensis (Bt) maize expressing the mcry1Ab and mcry2Ab genes (2A7) on soil nutrient dynamics, as well as the diversity and function of soil microbial communities, including bacteria and fungi, within different soil compartments. Our findings revealed a plant-shaped rhizosphere (RS) microbial community as a result of the selective recruitment of microorganisms from the surrounding environment. The transgene insertion had a significant impact on the RS niche, and several species eventually became associated with Z58 and 2A7 plants. For example, Neocosmospora rubicola fungal and Pantoea dispersa bacterial microorganisms were significantly decreased in the dual Bt-transgenic 2A7 rhizosphere but enriched in the Z58 rhizospheres. The activity of soil enzymes such as urease, invertase, and alkaline phosphatase was boosted by Bt-transgenic 2A7. LefSe analysis identified significant bacterial and fungal biomarker species that were responsible for the differential effects of Bt-transgenic 2A7 and control Z58 within rhizosphere soils. Mantel analysis further demonstrated that the root exudates of 2A7 altered nutrient-acquisition enzymes by influencing biomarker taxa. PICRUSt2 functional characterization revealed a significantly higher abundance of the phosphate-starvation-inducible protein in control Z58 than in Bt-transgenic 2A7. Furthermore, taxonomy, alpha (Shannon diversity), and beta diversity analyses all revealed niche-driven microbial profile differentiation. Niche partitioning also had a significant impact on N- and P-related COGs as well. Our findings suggests that Bt-transgenic 2A7 modulates rhizosphere microbial communities by affecting biomarker taxa and soil enzyme activity. These findings will promote sustainable agriculture practices by advancing our knowledge of the ecological effects of Bt crops on soil microbial communities.

The Application of Carbon-Based Fertilizer Changed the Microbial Composition and Co-Occurrence Network Topological Properties of Vineyard Soil

Charcoal-based fertilizer could be used extensively and is environmentally friendly. An experiment was designed to investigate the effects of different charcoal-based fertilizer application methods on soil microbiology and grape quality in a vineyard to guide the cultivation of ‘Shine-Muscat’. A control treatment without fertilization and six other treatments were set up. Four treatments applied carbon-based fertilizer as a base fertilizer with or without potassium fulvic acid, a complex microbial agent, or Bacillus subtilis, and two treatments were only applied with two applications of carbon-based fertilizer or compound fertilizer during the expansion period. The results showed that the bacterial phyla were mainly Proteobacteria and Bacteroidetes. Ascomycota, Basidiomycota, and Mortierellomycota dominated the fungal community. At the genus level, the composition of fungi, compared to bacteria, varied significantly, while the dominant flora differed among fertilization practices. Application of charcoal-based fertilizer enriched beneficial microorganisms, while chemical fertilizers enriched pathogenic microorganisms. The addition of microbial fungicides and biostimulants for a period reduced the size of the microbial network, lowered positive correlations, and enhanced resistance to adverse conditions and diseases and there was no significant correlation between agronomic traits and microbial network topology. A combination of soil microbial and grape agronomic traits suggests that a charcoal-based fertilizer base, with microbial fungicides applied, is the optimal fertilization regimen for grape.

Soil Microbial Communities and Wine Terroir: Research Gaps and Data Needs.

Microbes found in soil can have a significant impact on the taste and quality of wine, also referred to as wine terroir. To date, wine terroir has been thought to be associated with the physical and chemical characteristics of the soil. However, there is a fragmented understanding of the contribution of vineyard soil microbes to wine terroir. Additionally, vineyards can play an important role in carbon sequestration since the promotion of healthy soil and microbial communities directly impacts greenhouse gas emissions in the atmosphere. We review 24 studies that explore the role of soil microbial communities in vineyards and their influence on grapevine health, grape composition, and wine quality. Studies spanning 2015 to 2018 laid a foundation by exploring soil microbial biogeography in vineyards, vineyard management effects, and the reservoir function of soil microbes for grape-associated microbiota. On the other hand, studies spanning 2019 to 2023 appear to have a more specific and targeted approach, delving into the relationships between soil microbes and grape metabolites, the microbial distribution at different soil depths, and microbial influences on wine flavor and composition. Next, we identify research gaps and make recommendations for future work. Specifically, most of the studies utilize targeted sequencing (16S, 26S, ITS), which only reveals community composition. Utilizing high-throughput omics approaches such as shotgun sequencing (to infer function) and transcriptomics (for actual function) is vital to determining the specific mechanisms by which soil microbes influence grape chemistry. Going forward, understanding the long-term effects of vineyard management practices and climate change on soil microbiology, grapevine trunk diseases, and the role of bacteriophages in vineyard soil and wine-making would be a fruitful investigation. Overall, the studies presented shed light on the importance of soil microbiomes and their interactions with grapevines in shaping wine production. However, there are still many aspects of this complex ecosystem that require further exploration and understanding to support sustainable viticulture and enhance wine quality.

Geochemistry and microbiology of boreal alluvial soil under salinisation

Soil salinisation in taiga landscapes is in most cases caused by anthropogenic activities. The study was carried out in Perm region (Russia) on the territory of the Verkhnekamskoe Potash Deposit. The inflow of sodium chloride drainage water into ground and surface waters during the production of potash fertilisers contributed to the technogenic salinisation of river valleys in the taiga zone. The purpose of the research was to investigate the microbial composition and chemical properties of alluvial soils in the area affected by NaCl waters in the Lyonva River valley. The chemical properties of soils were determined standard methods such as potentiometric method, titration, and spectrophotometry. The microbial community was determined by 16 s rRNA gene metagenomic analysis. The soil's mineralogical composition was determined using a binocular microscope and diffractometer for XRD. The morphology and microstructure of the samples has been studied using an analytical scanning electron microscope. In Solonchaks, an interdependence of salinity and bacterial species composition was discovered, along with the bacteria's geochemical processes. The topsoil contains a considerable amount of toxic salts, ranging from 5.9 to 17%. The ratio of exchangeable cations in the soil absorption complex changes when exchangeable calcium is replaced by sodium. Salinisation caused the neutralisation of acidic alluvial soils. Bacteria originating from marine and highly mineralised environments predominate in the soil. The soils are dominated by bacteria originating from marine and highly mineralised environments, such as Proteobacteria, Shewanella (75–79%), Thiomicrospira (26%), Desulfuromonas, Marinomonas and Idiomarina (9–10%), Alicyclobacillus (4%). The correlation revealed the connection of some taxa with ions of aqueous extract, as well as with exchangeable sodium, mobile iron and total sulphur. Some bacteria promote azonal geochemical processes within alluvial forest soil, such as the reduction of iron and manganese, the production of sulphides, and the oxidation of sulphur, hydrogen, and iron. Sulphide accumulation resulting in the formation of a hydrotroilite horizon (FeS × nH2O) and iron-bearing formations were found on the soil surface. Studying the properties and degree of soil disturbance makes it possible to identify the contribution of enterprises to environmental pollution, as well as to apply new methods for monitoring, purifying, and storing potassium waste.

Above- and below-ground morpho-physiological traits indicate that biochar is a potential peat substitute for grapevine cuttings nursery production

The growing demand for grapevine planting materials, due to growing global viticulture, is promoting research studies to improve vineyard sustainability. In greenhouse nurseries, peat is the most common growing medium component used although is an expensive and non-renewable material. Indeed, the reduction of peat exploitation is receiving great attention, and currently, several materials are being investigated as peat substitutes for composing the cultivation substrates. Biochar, a carbon-rich, recalcitrant charred organic co-product of the pyrolysis or gasification process, has emerged as a potentially promising replacement for soilless substrates in nursery plant material propagation. Although several studies carried out at greenhouse nurseries have shown that biochar, can improve plant growth, only a few studies have focused on the production of grapevine plant material. To fulfil this knowledge gap and push forward the sustainability of the nursery sector, we evaluated above and below-ground morpho-physiological traits of one-year-old potted grapevine cuttings growing with 30% volume of four different biochar types (i.e., from pyrolysis and gasification) mixed with commercial peat. The present study shows that biochar can be used in growing media mixes without adverse effects on roots, improves soil water retention and leaf water potential, and improves the effects on soil microbiology.

Cross-kingdom nutrient exchange in the plant-arbuscular mycorrhizal fungus-bacterium continuum.

The association between plants and arbuscular mycorrhizal fungi (AMF) affects plant performance and ecosystem functioning. Recent studies have identified AMF-associated bacteria as cooperative partners that participate in AMF-plant symbiosis: specific endobacteria live inside AMF, and hyphospheric bacteria colonize the soil that surrounds the extraradical hyphae. In this Review, we describe the concept of a plant-AMF-bacterium continuum, summarize current advances and provide perspectives on soil microbiology. First, we review the top-down carbon flow and the bottom-up mineral flow (especially phosphorus and nitrogen) in this continuum, as well as how AMF-bacteria interactions influence the biogeochemical cycling of nutrients (for example, carbon, phosphorus and nitrogen). Second, we discuss how AMF interact with hyphospheric bacteria or endobacteria to regulate nutrient exchange between plants and AMF, and the possible molecular mechanisms that underpin this continuum. Finally, we explore future prospects for studies on the hyphosphere to facilitate the utilization of AMF and hyphospheric bacteria in sustainable agriculture.

Stormwater quality and microbial ecology in an urban rain garden system

Rain gardens are an alternative to traditional drainage, able to lower flood risk and reduce environmental contamination from stormwater. Removal of contaminants by rain gardens is driven by both physical processes (such as filtration and sedimentation) and biological metabolic processes by soil microorganisms. To better understand rain garden performance, this study explored the impact of rain gardens on pollution removal and microbial composition and function using rain gardens fed real stormwater from a busy road. Each rain garden had different grain size and hydraulic conductivities as these parameters have been argued to impact pollution removal. All four rain gardens were able to reduce the contaminant load in the stormwaters, reducing the concentration of dissolved metals, suspended solids and chemical oxygen demand. Significantly, road salting in the winter did not cause dissolved metals to be released from the rain gardens, suggesting that rain gardens can continue to reduce contaminant loads during winter salting regimes. Some variation in pollutant removal was seen between the soils tested, but overall no clear trend could be identified based on grain size and hydraulic conductivity with all rain gardens performing broadly similarly. The rain garden soil altered the microbial community in the stormwater, resulting in greater taxonomic evenness and functional richness in the effluent water compared to the influent. Functional richness of the soils was also higher than that of the input waters, indicating that the microbes in the rain gardens were able to perform a wider range of functions than those of the influent. Effluent and soil microbiology was more impacted by sampling date than soil grain size, which may be a result of the soil communities maturing and changing over time. As greater numbers of rain gardens are installed to tackle flooding from climate change, it is important to ensure the environment is protected from urban contaminants in the stormwater. The results in this study further highlight the ability of rain gardens to undertake this important task.

A Review on the Applications of Biochar in Agricultural Farms: A Low Carbon Emission Technology

Improving the condition of the soil is essential for successful agriculture since it increases crop output and soil fertility. Applying biochar to the soil can boost crop yields and soil fertility. Biochar is a solid carbon-rich substance made by pyrolyzing biomass, which includes trash, wood, and agricultural crop leftovers under low oxygen conditions. Because biochar has potential uses in waste recycling, soil nutrient retention, and greenhouse gas emission reduction, it is significant for sequestering carbon. Over the last two decades, biochar has received substantial attention in agriculture and the environment. Agriculture soil productivity has long been increased by the application of synthetic fertilizers, some of which leached into the environment and released greenhouse gases (GHG). Improving soil microbiology and water retention, as well as increasing fertilizer efficiency, are some of the basic problems facing agricultural practices. Biochar is becoming more and more popular as a soil supplement to increase crop yields and sequester carbon. Biochar is one of the many conservation agricultural techniques that can be used to improve soil fertility, and crop productivity, and slow down global warming. It is also a readily available and important input for sustainable agriculture. Furthering global food security, biochar may improve soils' ability to produce crops under various biotic and abiotic stress. This review examines the numerous uses of biochar to guarantee the long-term, safe enhancement of soil fertility. An overview of the characteristics, manufacturing process, and applications of biochar in agriculture is given in this review. Researchers, farmers, and academics interested in using biochar might find this review to be a helpful resource.

The Interaction of Microplastics and Microbioplastics with Soil and a Comparison of Their Potential to Spread Pathogens

Microplastics contribute to various environmental issues and serve as carriers for a wide range of toxic compounds such as pesticides, pharmaceuticals, and metal ions. Consequently, there is a gradual shift towards replacing them with biodegradable plastics (bioplastics). However, biodegradable plastics require specific conditions for complete biodegradation, and their biodeterioration often leads to the rapid production of smaller fragments, known as microbioplastics. In this review, we summarize selected issues related to the impact of plastic particles on soil properties and the soil microbiome. Findings from numerous studies indicate that both microplastics and microbioplastics induce adverse changes in soil microbiology, potentially increasing the abundance of soil-borne pathogens. Based on these observations, we argue that plastic particles could serve as carriers for colonies of soil-borne pathogens. Furthermore, the use of bioplastics may exacerbate this issue due to their easier and faster formation, increased support for biofilms, and more pronounced adverse effects on soil biota. However, further research is necessary to either substantiate or refute this perspective.

Quorum sensing-related activities of beneficial and pathogenic bacteria have important implications for plant and human health.

Eukaryotic organisms coevolved with microbes from the environment forming holobiotic meta-genomic units. Members of host-associated microbiomes have commensalic, beneficial/symbiotic, or pathogenic phenotypes. More than 100 years ago, Lorenz Hiltner, pioneer of soil microbiology, introduced the term 'Rhizosphere' to characterize the observation that a high density of saprophytic, beneficial, and pathogenic microbes are attracted by root exudates. The balance between these types of microbes decide about the health of the host. Nowadays we know, that for the interaction of microbes with all eukaryotic hosts similar principles and processes of cooperative and competitive functions are in action. Small diffusible molecules like (phyto)hormones, volatiles and quorum sensing signals are examples for mediators of interspecies and cross-kingdom interactions. Quorum sensing of bacteria is mediated by different autoinducible metabolites in a density-dependent manner. In this perspective publication, the role of QS-related activities for the health of hosts will be discussed focussing mostly on N-acyl-homoserine lactones (AHL). It is also considered that in some cases very close phylogenetic relations exist between plant beneficial and opportunistic human pathogenic bacteria. Based on a genome and system-targeted new understanding, sociomicrobiological solutions are possible for the biocontrol of diseases and the health improvement of eukaryotic hosts.

Moving towards a mechanistic understanding of biostimulant impacts on soil properties and processes: a semi-systematic review

Biostimulants are gaining prominence in scientific research, with the potential to enhance plant productivity through benefits to crop yield/quality and tolerance to environmental stresses. Through possible improvements to nutrient use efficiency, they may also lessen the adverse environmental impacts of conventional inorganic fertilizer use in agriculture. The application of biostimulants is currently uncommon as a farming practice, with uncertain effectiveness in delivering these potential benefits. Current research focuses on biostimulant effects on plant physiological changes. There is little scientific evidence on the impact of biostimulants on soil properties (biological, physical, or chemical) or soil functions. This knowledge gap should be addressed considering the vital role of soil processes in the bioavailability of nutrients, as reflected in crop productivity. This review evaluates laboratory and field experimental work on the effectiveness of common, non-microbial biostimulants, with a focus on their modes of action within the soil matrix. Of 2,097 initial articles returned through the search strings, 10 were within the scope of this review. A common soil biostimulant mechanism emerges from this literature. This relates to the supply of nutrients provided by the biostimulants, which stimulate native soil microbiology in mineralizing organic material in the soil, thus producing more bioavailable nutrients for plant uptake. Additionally, some articles link biostimulant effects to soil physical and chemical changes, which in turn impact soil biology (and vice versa). However, there is inconsistent evidence to provide full support for these explanatory mechanisms. This review highlights the need for further research into the effect of biostimulants on the native soil microbiology and associated soil properties, to provide greater clarity on biostimulants’ modes of action and greater mechanistic insights into how they can be used to improve crop production.

Effects of Microbial Inoculants Combined with Chemical Fertilizer on Growth and Soil Nutrient Dynamics of Timothy (Phleum pratense L.)

Microbial inoculants derived from plant growth-promoting rhizobacteria (PGPR) offer eco-friendly alternatives to traditional chemical fertilizers, maintaining microbiota balance in agricultural systems. However, limited research has explored the combined effects of microbial inoculants and chemical fertilizers on crop growth and soil properties. In this study, we investigated seven fertilizer combinations, ranging from no fertilizer to various proportions of chemical fertilizers with microbial inoculants, on timothy (Phleum pratense L.) growth, chlorophyll content, soil properties, enzyme activities, and soil microbial communities. A randomized block design was employed to analyze these effects. The results indicate that the combination of 85% chemical fertilizer with microbial inoculants significantly increased timothy yield and chlorophyll content. In addition, a reduction to 55% chemical fertilizer in conjunction with microbial inoculants resulted in comparable yield to that of 100% fertilizer with no inoculants. The microbial inoculants treatments notably elevated soil catalase, urease, acid phosphatase, and invertase activities, along with soil fast-acting nutrient content. The sequencing results show that the abundance of beneficial bacteria increased, while that of fungi decreased in the soil rhizosphere after the application of microbial inoculants. This study underscored the potential of microbial inoculants combined with reductions in chemical fertilizers to enhance soil microbiology, nutrient content, and beneficial microbial abundance while suppressing pathogenic fungi, thereby promoting timothy growth and yield. These findings provide a theoretical basis for the use of microbial inoculants in sustainable agricultural practices, providing valuable insights for optimizing microbial inoculants and chemical fertilizer formulations to mitigate the sustainability challenges posed by conventional fertilizers.

Effects of soil conditioners on vineyard saline soil physicochemical properties and bacterial community in arid areas

AbstractSoil salinization adversely affects soil quality and ecosystem. Many researches have tried to ameliorate saline soils by soil conditioners. However, little is known about the differences in the responses of soil bacterial communities to natural and artificial conditioners applied to saline soils. Therefore, in this study, the effects of natural humic acid (IK), synthetic polymer (IP), and composite material (IF) (mixture of IK and IP (1:1)) on bacterial community structure and functional genes in saline soil were evaluated to clarify their differences. The results showed that the application of the three soil conditioners significantly reduced soil pH and Na+ content but increased soil alkaline phosphatase, urease, invertase and catalase activities, bacterial diversity, and nutrients, compared to the control (no conditioner). IK application increased bacterial relative abundance (e.g., Subgroup_6, RB41, MND1, and KD4‐96) and metabolic functions (e.g., Two‐component system and Biosynthesis of amino acids) by increasing soil nitrogen and maintaining K+ and Na+ balance. IP application increased soil alkaline phosphatase and urease activities as well as bacterial relative abundance (e.g., Subgroup_6, RB41, MND1, Gemmatimonadaceae, and KD4‐96) and metabolic functions (e.g., Quorum sensing and carbon metabolism) by increasing soil organic carbon/nitrogen content. IF application increased the bacterial relative abundance of Subgroup_6, RB41, and MND1 by increasing soil available nitrogen and regulated their metabolic pathways (e.g., ABC transporters and microbial metabolism). On the whole, IK, IP, and IF could regulate the structure and function of soil bacterial community in saline soils. This study clarifies difference in the effects of different soil conditioners on the amelioration of saline soils from the perspective of soil microbiology, and provides a reference for the amelioration of saline soils in arid areas.

Effect of bioremediation or organic treatments of soil contaminated with some heavy metals on the biological and L- glutaminase activity

For the purpose of identify the ability of bioremediation or organic treatments of soil to reduce the harmful effect of heavy metals including Zn, pb and cd on the biological activity such as soil respiration, the total number of fungi and the activity of the L-glutaminase enzyme have been studied. A laboratory incubation experiment was applied in the Soil Microbiology Laboratory in the Department of Soil Sciences and Water Resources in the College of Agriculture– Basrah University. The soil of the surface layer (0-30 cm) from Qurna district, north of Basrah province was contaminated with the critical levels of the heavy metals cd, Pb, Zn and were placed in an incubator at 30°C for 14 days. The biological and organic treatments process was applied by inoculating soil contaminated with Aspergillus niger or humic acid (40 L ha-1) or sterilized cow manure (4%), incubated at 25°C for 30 days, then some biological parameters were estimated at the periods of 10, 20 and 30 days. Results have been showed that an inhibitory effect of the studied heavy metals on the biological parameters, and the Cd has been recorded the highest percentage of inhibition of total number of fungi (30.67%), the amount of CO2 released (13.93%) and the activity of the L-glutaminase enzyme (45.33%) compared to the control treatment. The ability of the treatments materials to remove heavy metals were (89.02%) for A. niger compared to humic acid (63.48%) and cow manure (48.71%). It was reflected in an increase in the number of fungi, which recorded 152, 167.75, 174.5 cfu g-1 when treated with A. niger, cow manure and humic acid, respectively compared to the control treatment which was (65.92 cfu g-1). The biological and organic treatments also increased the level of liberated CO2 from the polluted soil to 268.62, 253.86, 303.59 mg CO2 g-1, respectively compared to the control treatment. The activity of the L-glutaminase enzyme has increased due to application of treatments. It was 57.02, 48.97, 70.41 µg NH4+ g-1 2hr.-1 for inoculated with A. niger or treated with cow manure and humic acid, respectively, while the control treatment was 37.19 µg NH4+ g-12hr.-1.

Effect of Different Levels of Extruded Coffee (Coffea arabica) Pulp Flour on the Productive Performance and Intestinal Morphometry of Cobb 500 Broiler Chickens.

Coffee pulp is a by-product of the coffee industry. Due to conventional management techniques, it represents a severe environmental problem due to its negative impact on the soil (anaerobic fermentation and pH changes), water sources (the infiltration of pollutants into streams, acidification of water sources, and modification of microorganisms), and biodiversity (soil microbiology, fish, crustaceans, and other vertebrates). Therefore, it is essential to develop protocols for the treatment of this waste so that it can be used again in other productive activities under the circular economy approach. This means that all the waste from a production process can be reused, can generate value for the benefit of the producer, and, in turn, mitigate the environmental impact. The objective of this study was to evaluate the replacement of 5 levels of wheat bran (WB) with extruded coffee pulp flour (ECPF) as an alternative to a conventional fiber source in broiler finisher diets. A total of 300 Cobb 500 chickens in the finishing phase were assessed in the study, grouped in 5 treatments: T1, a conventional diet or control treatment (100% WB and 0% ECPF), T2 (75% WB and 25% ECPF), T3 (50% WB and 50% ECPF), T4 (25% WB and 75% ECPF), and T5 (0% WB and 100% ECPF). Feed intake, weight gain, feed conversion ratio (FCR), and intestinal morphometry (villus length: VL, villus width: VW, crypt depth: CD, villus height/crypt depth ratio: V/C, and villus surface area: VSA) were evaluated at the level of the duodenum, jejunum, and ileum. Feed intake decreased correspondingly as the ECPF in the diet was increased, with statistical differences (p < 0.01) between their averages; the most significant weight gain (834.61 g) was evidenced with the T2 treatment, this being statistically different (p < 0.01) from T4 and T5; similarly, the best FCR (1.58) was evidenced with the T2 treatment, followed by the control treatment T1 (with 1.64); however, they were not statistically different (p > 0.05). All treatment results were similar to the VL control samples in the three intestinal portions, except for the T5 in the jejunum, which showed statistical differences from the control. In VW, the treatment results were similar to the control samples of the jejunum and ileum; however, in the duodenum, the T5 results showed the highest value (172.18 μm), being statistically different (p < 0.05) from the other treatments being evaluated. For CD, it was only in the duodenum that the T2 and T3 treatments were similar to the control. Likewise, for V/C in the duodenum, only the T2 results were similar to the control. There was no significant difference in the VSA among the different treatment groups. T2 showed better production parameters without altering the intestinal villi. In conclusion, ECPF is a potential input for use to replace up to 25% of WB in the feed of broilers in the finishing phase.

Weathered granites and soils harbour microbes with lanthanide-dependent methylotrophic enzymes

BackgroundPrior to soil formation, phosphate liberated by rock weathering is often sequestered into highly insoluble lanthanide phosphate minerals. Dissolution of these minerals releases phosphate and lanthanides to the biosphere. Currently, the microorganisms involved in phosphate mineral dissolution and the role of lanthanides in microbial metabolism are poorly understood.ResultsAlthough there have been many studies of soil microbiology, very little research has investigated microbiomes of weathered rock. Here, we sampled weathered granite and associated soil to identify the zones of lanthanide phosphate mineral solubilisation and genomically define the organisms implicated in lanthanide utilisation. We reconstructed 136 genomes from 11 bacterial phyla and found that gene clusters implicated in lanthanide-based metabolism of methanol (primarily xoxF3 and xoxF5) are surprisingly common in microbial communities in moderately weathered granite. Notably, xoxF3 systems were found in Verrucomicrobia for the first time, and in Acidobacteria, Gemmatimonadetes and Alphaproteobacteria. The xoxF-containing gene clusters are shared by diverse Acidobacteria and Gemmatimonadetes, and include conserved hypothetical proteins and transporters not associated with the few well studied xoxF systems. Given that siderophore-like molecules that strongly bind lanthanides may be required to solubilise lanthanide phosphates, it is notable that candidate metallophore biosynthesis systems were most prevalent in bacteria in moderately weathered rock, especially in Acidobacteria with lanthanide-based systems.ConclusionsPhosphate mineral dissolution, putative metallophore production and lanthanide utilisation by enzymes involved in methanol oxidation linked to carbonic acid production co-occur in the zone of moderate granite weathering. In combination, these microbial processes likely accelerate the conversion of granitic rock to soil.

Optimizing Drought Resilience in Okra (Abelmoschus esculentus) Through Synergistic Actions of Drought-Tolerant Rhizobacterial Strains and Brassinosteroids Hormone Application: A Jar Trial Study

&lt;p&gt;The study addresses the critical issue of water scarcity in agriculture, which causes significant losses by disrupting plant-water connections and increasing oxidative damage to biological components. In this study, we evaluated the synergistic potential of pre-isolated and identified exopolysaccharide-producing strains (ZE15 and ZE11) in combination with the drought-alleviating hormone Brassinosteroids (BR) to boost okra development under PEG-6000-induced drought stress. The experiment was carried out in a controlled environment at the Soil Microbiology and Biotechnology Laboratory. It used a completely randomized design with factorial arrangements and three replications. Individual rhizobacterial strains were evaluated and also used in a consortium (ZE15+ZE11) at two different Brassinosteroids (BR) concentrations (10-4 M and 10-8 M). The results showed that the consortium of (ZE15+ZE11) with foliar spray of BR (10-8 M) greatly increased okra production. Under both control and drought stress conditions, shoot length (37 and 34%), root length (41 and 40%), root surface area (32, 34%), and root volume (35 and 33%) improved significantly compared to the control group. Furthermore, this treatment demonstrated the most promising results in alleviating drought-induced oxidative damage by improving antioxidant defense mechanisms. Key enzyme activities, such as MDA (30 and 31%), GR (32 and 30%), SOD (36 and 37%), and CAT (31 and 34%), rose significantly under both control and drought stress conditions when compared to the control. To summarize, the use of drought-tolerant bacteria in concert with plant growth hormone provides a synergistic approach to mitigating the negative impacts of drought, resulting in considerable gains in okra growth and antioxidant defenses. This technique shows promise as a way to increase agricultural productivity in arid and semi-arid areas.&lt;/p&gt;&#x0D;

Review of Crop Response to Soil Salinity Stress: Possible Approaches from Leaching to Nano-Management

Soil salinity is a serious problem facing many countries globally, especially those with semi-arid and arid climates. Soil salinity can have negative influences on soil microbial activity as well as many chemical and physical soil processes, all of which are crucial for soil health, fertility, and productivity. Soil salinity can negatively affect physiological, biochemical, and genetic attributes of cultivated plants as well. Plants have a wide variety of responses to salinity stress and are classified as sensitive (e.g., carrot and strawberry), moderately sensitive (grapevine), moderately tolerant (wheat) and tolerant (barley and date palm) to soil salinity depending on the salt content required to cause crop production problems. Salinity mitigation represents a critical global agricultural issue. This review highlights the properties and classification of salt-affected soils, plant damage from osmotic stress due to soil salinity, possible approaches for soil salinity mitigation (i.e., applied nutrients, microbial inoculations, organic amendments, physio-chemical approaches, biological approaches, and nano-management), and research gaps that are important for the future of food security. The strong relationship between soil salinity and different soil subdisciplines (mainly, soil biogeochemistry, soil microbiology, soil fertility and plant nutrition) are also discussed.