Patterns Of Microbial Succession Research Articles

Advanced wastewater treatment with microalgae-indigenous bacterial interactions

Microalgal-indigenous bacterial wastewater treatment (MBWT) emerges as a promising approach for the concurrent removal of nitrogen (N) and phosphorus (P). Despite its potential, the prevalent use of MBWT in batch systems limits its broader application. Furthermore, the success of MBWT critically depends on the stable self-adaptation and synergistic interactions between microalgae and indigenous bacteria, yet the underlying biological mechanisms are not fully understood. Here we explore the viability and microbial dynamics of a continuous flow microalgae-indigenous bacteria advanced wastewater treatment system (CFMBAWTS) in processing actual secondary effluent, with a focus on varying hydraulic retention times (HRTs). The research highlights a stable, mutually beneficial relationship between indigenous bacteria and microalgae. Microalgae and indigenous bacteria can create an optimal environment for each other by providing essential cofactors (like iron, vitamins, and indole-3-acetic acid), oxygen, dissolved organic matter, and tryptophan. This collaboration leads to effective microbial growth, enhanced N and P removal, and energy generation. The study also uncovers crucial metabolic pathways, functional genes, and patterns of microbial succession. Significantly, the effluent NH4+-N and P levels complied with the Chinese national Class-II, Class-V, Class-IA, and Class-IB wastewater discharge standards when the HRT was reduced from 15 to 6 h. Optimal results, including the highest rates of CO2 fixation (1.23 g L−1), total energy yield (32.35 kJ L−1), and the maximal lipid (33.91%) and carbohydrate (41.91%) content, were observed at an HRT of 15 h. Overall, this study not only confirms the feasibility of CFMBAWTS but also lays a crucial foundation for enhancing our understanding of this technology and propelling its practical application in wastewater treatment plants.

Biochar addition accelerates the humification process by affecting the microbial community during human excreta composting

ABSTRACT Biochar addition plays an important role in manure composting, but its driving mechanism on microbial succession and humification process of human excreta composting is still unclear. In the present study, the mechanism of biochar addition was explored by analysing the humification process and microbial succession pattern of human excreta aerobic composting without and with 10% biochar (HF and BHF). Results indicated that BHF improved composting temperature, advanced the thermophilic phase by 1 d, increased the germination index by 49.03%, promoted the growth rate of humic acid content by 17.46%, and raised the compost product with the ratio of humic acid to fulvic acid (HA/FA) by 16.19%. Biochar regulated the diversity of fungi and bacteria, increasing the relative abundance of Planifilum, Meyerozyma and Melanocarpus in the thermophilic phase, and Saccharomonospora, Flavobacterium, Thermomyces and Remersonia in the mature phase, which accelerates the humification. Bacterial communities’ succession had an obvious correlation with the total carbon, total nitrogen, and temperature (P < 0.05), while the succession of fungal communities was influenced by the HA/FA and pH (P < 0.05). This study could provide a reference for the improvement of on-site human excreta harmless by extending the thermophilic phase, and facilitating the humification in human excreta compost with biochar addition.

Effects of Exogenous Oral Infusion of Volatile Fatty Acids on Ileal Microbiome Profiling and Epithelial Health in Goats

The role of volatile fatty acids (VFAs) in ruminal fermentation is well studied, but their effects on the ileal microbiome and epithelial health remain less explored. In this study, we investigated the impact of the exogenous oral infusion of three VFAs, sodium acetate (NaAc), propionate (NaPr), and butyrate (NaBu), on the VFA concentrations in ileal contents, as well as ileal microbiome profiling and epithelial health parameters (inflammatory cytokine and tight junctions) in goats. The data demonstrated that the oral infusion of three VFAs can enhance VFA production by increasing the proportions of each individual VFA and the total VFAs. Then, the microbiome revealed distinct microbial succession patterns and altered microbial diversities in response to the oral infusion of VFA treatments. Moreover, the oral infusion of each VFA had unique effects on the ileal bacterial community, with potential implications for epithelial health. Notably, the oral infusion of VFAs demonstrated potential anti-inflammatory effects, as evidenced by reduced IL-6 levels in the NaPr group and increased IL-10 levels in the NaAc group. Notably, the oral infusion of VFAs did not directly impact the tight junction concentrations, such as Claudin1, Occludin, and ZO-1. Lastly, the correlation analyses identified specific relationships between the ileal bacteria and epithelial health parameters, and Prevotella was positively correlated with IL-6 and IL-1β, while Bifidobacterium was positively correlated with IL-10. These results highlighted the crosstalk between VFAs, the ileal microbiome, and the health of the small intestine. Our findings had significant implications for optimizing ruminant nutrition, enhancing epithelial health, and promoting sustainable livestock production practices.

Trajectories of freshwater microbial genomics and greenhouse gas saturation upon glacial retreat

Due to climate warming, ice sheets around the world are losing mass, contributing to changes across terrestrial landscapes on decadal time spans. However, landscape repercussions on climate are poorly constrained mostly due to limited knowledge on microbial responses to deglaciation. Here, we reveal the genomic succession from chemolithotrophy to photo- and heterotrophy and increases in methane supersaturation in freshwater lakes upon glacial retreat. Arctic lakes at Svalbard also revealed strong microbial signatures form nutrient fertilization by birds. Although methanotrophs were present and increased along lake chronosequences, methane consumption rates were low even in supersaturated systems. Nitrous oxide oversaturation and genomic information suggest active nitrogen cycling across the entire deglaciated landscape, and in the high Arctic, increasing bird populations serve as major modulators at many sites. Our findings show diverse microbial succession patterns, and trajectories in carbon and nitrogen cycle processes representing a positive feedback loop of deglaciation on climate warming.

Microbiological profiles, physiochemical properties and volatile compounds of goat milk kefir fermented by reconstituted kefir grains

Kefir is a health-promoting fermented dairy products, consisting in a variety of bacterial and fungal species. The physical and chemical properties and the correlation between the microbiota and volatile compounds of goat milk kefir fermented by reconstituted kefir grains were investigated. Cluster analysis showed that a strong symbiotic homeostasis system existed in goat milk kefir, indicating that the composition of microorganism in reconstituted kefir grains was still restricted by the original one. Compared with other kefir samples, goat milk kefir 80DE20CN (ratios of kefir grains CN/DE = 80/20) showed significant improvement in physiochemical properties and “Fruity” flavor. Positive correlations among Lactobacillus helveticus and ethyl acetate, amyl acetate and ethanol, Kazachstania unispora and octyl formate, 1-heptanol and hexanoic acid were obtained by Partial least squares regression analysis (PLSR) model. The results showed that changes in microbial succession patterns may be useful to optimize the physiochemistry and flavor of goat milk kefir or related products.

Research on the aroma properties and microbial succession patterns in the processing of Chinese yellow sticky rice jiuqu steamed bread

To investigate the aroma properties and microbial succession patterns of Chinese steamed bread (CSB) prepared with yellow sticky rice and Baijiu Qu, several important stages were determined in processing, including yellow sticky rice, fermented rice, fermented juice, sourdough, and steamed bread by solid-phase microextraction gas chromatography-mass spectrometry (SPME-GC-MS) and high-throughput sequencing (HTS). The composition of volatile compounds varied significantly in different stages. The highest content of 2-methyl-butane (9.69%) and hexanal (6.34%) was detected in yellow sticky rice while the high content of ethanol (39.60%–42.14%), phenylethyl alcohol (9.01%–15.70%) and 3-methyl-1-butanol (8.91%–10.19%) endowed other samples sweet, rose and brandy aroma. Bacterial community mainly consisted of Chloroplast (10.83%–70.20%) and Weissella (0.43%–51.49%), and fungal community was primarily composed of Saccharomyces (1.22%–64.25%). Phenylethyl acetate was positively related to Saccharomyces, and phenylethyl alcohol and 1-hexanol were positively related to Lactobacillus. This paper provided a new prospect for the industrialization of traditional Chinese steamed bread.

Gut Microbial Succession Patterns and Metabolic Profiling during Pregnancy and Lactation in a Goat Model.

The maternal gut microbiome affects the duration of pregnancy, delivery, and lactation. It also coordinates the stability of maternal metabolism by regulating and modulating inflammatory cytokines and reproductive hormones. This has been shown in several species; however, the situation in ruminants remains a black box. Here, we aimed to elucidate the relationship between the hindgut microbiota, metabolism, and reproductive hormones in domestic goats (Capra hircus) during nonpregnancy, pregnancy, and lactation stages. The hindgut microbiota was altered during these three stages, with a drastic decrease in the abundance of Family_XIII_AD3011_group in the second and third trimesters of pregnancy. Additionally, a decline in the abundance of Christensenellaceae_R-7_group and Turicibacter was observed from the nonpregnancy stage to late gestation. Family_XIII_AD3011_group and Paeniclostridium were strongly correlated with decreased fecal estradiol and progesterone. Furthermore, we generated a metabolome atlas of the gut and serum from nonpregnancy to lactation to reveal the specific metabolic fingerprints of each physiological stage. Several specific gut metabolites, including carnitine C8:1, γ-aminobutyric acid, and indole-3-carboxylic acid, were negatively correlated with the fecal and serum estradiol concentrations. In contrast, 2'-deoxyinosine, deoxyadenosine, and 5'-deoxyadenosine were positively correlated with the fecal and serum estradiol concentrations. The levels of 2'-deoxyinosine, deoxyadenosine, and 5'-deoxyadenosine in fecal samples were positively correlated with Family_XIII_AD3011_group. Other serum metabolites, such as (±)12-HEPE (hydroxy eicosapentaenoic acid), (±)15-HEPE, (±)18-HEPE, cytidine, uracil, and 5-hydroxyindole-3-acetic acid, were negatively correlated with the serum concentrations of estradiol and progesterone. Finally, Corynebacterium and Clostridium_sensu_stricto_1 in the fecal samples were positively correlated with the abundance of 11,12-EET (epoxy-eicosatrienoic acid), (±)18-HEPE, (±)15-HEPE, and (±)12-HEPE in the serum. IMPORTANCE Our findings revealed that the activity of Family_XIII_AD3011_group and Corynebacterium is strongly correlated with the beneficial regulation of physiological hormones and metabolic changes during pregnancy and lactation. These findings are key for guiding targeted microbial therapeutic approaches to modulate microbiomes in gestating and lactating mammals.

Effects of developmental stage and store time on the microbial community and fermentation quality of sweet sorghum silage

This study investigated the effects of developmental stage and store time on the chemical composition, microbial community, co-occurrence networks and fermentation characteristics of sweet sorghum silage. Sweet sorghum harvested at two developmental stages (heading stage, S1; hard dough stage, S2) was treated as follows: (I) natural fermentation of S1 (NS1); (II) natural fermentation of S2 (NS2) and ensiled for 1, 3, 7, 15, 30 and 60 days. After 60 days of ensiling, NS2 silage had higher lactic acid concentration and the ratio of lactic to acetic acid, and lower pH value and acetic acid concentration than NS1 silage. Meanwhile, NS2 silage also had higher ammonia nitrogen (NH3-N) content than NS1 silage, but the NH3-N content of both treatments was lower than 100 g/kg TN. Leuconostoc and Lactococcus were respectively dominant in both 7-day NS1 and NS2 silages, while Lactobacillus was the most abundant genus in 30-day NS1 and NS2 silages. The developmental stage altered the bacterial co-occurrence networks of fresh and ensiled sweet sorghum. Spearman’s correlation heatmap showed that the higher lactic acid content and ratio of lactic to acetic acid in NS2 silage could be associated with the higher water-soluble carbohydrate content in S2 material, the higher abundance of Lactococcus in the initial phase of ensiling and the higher abundance of Lactobacillus in the late phase of ensiling. These results concluded that the sweet sorghum harvested at the hard dough stage is preferred for silage production over the sweet sorghum harvested at the heading stage. HIGHLIGHTS Microbial succession pattern was studied on fresh and ensiled samples. Growth stage affected the chemical and microbial parameters of sweet sorghum. Epiphytic microbiota was correlated with the chemical composition of forage. Metagenomic sequencing showed Lactobacillus was dominated in all silages. Growth stage accelerated the fermentation of sweet sorghum silage.

Microbial communities and flavor formation in the fermentation of Chinese strong-flavor Baijiu produced from old and new Zaopei

Differences between the old and young pit mud in a pit cellar enlarged differences in Zaopei (ZP) fermentation to varying degrees, ultimately affecting the aromatic quality of the Baijiu that is produced. The whole fermentation process could be divided into two phases, namely phase I (0_15 days) and phase II (25_40 days) based on the dynamics of the diversity of microbial communities. Starch and reducing sugar in phase I were used more rapidly by microflora, leading to a higher ethanol production in ZP within an old pit mud (OZP) and a higher acidity in ZP within a new pit mud (NZP), and resulting in different microbial succession patterns therein. Lactobacillus became the dominant bacteria more rapidly in OZP but maintained its abundance in NZP. Monascus and Trichosporon were the unique dominant functional fungi observed in the phase II of OZP. Two bacterial and six fungal genera were identified as core functional microorganisms linked to the variations in volatile metabolites during the fermentation process, ultimately resulting in a higher ester content in OZP and improved liquor quality. This study demonstrated the effect of new and old pit muds on ZP fermentation, and its findings can guide the future artificial regulation of NZP.

Dynamic succession patterns and interactions of phyllospheric microorganisms during NOx exposure

The phyllosphere plays a role in alleviating air pollution, potentially leveraging the native microorganisms for further enhancement. It remains unclear how phyllospheric microorganisms respond to nitrogen oxide (NOx) pollution and participate in abatement. Here, we exposed Schefflera octophylla to NOx to reveal microbial succession patterns and interactions in the phyllosphere. During exposure, phyllospheric ammonium (NH4+-N) significantly increased, with different alpha diversity changes between bacteria and fungi. Community successions enclosed core taxa with relatively excellent tolerance, represented by bacterial genera (Norcardiodes, Aeromicrobium) and fungal genera (Talaromyces, Acremonium). The exposure eliminated specific pathogens (e.g., Zymoseptoria) and benefitted plant growth-promoting populations (e.g., Talaromyces, Exiguobacterium), which might favor plant disease control, improve plant health and thus buffer NOx pollution. Cooccurrence networks revealed more negative correlations among bacteria and closer linkages among fungi during exposure. Our results also showed a functional shift from the predominance of pathotrophs to saprotrophs. Our study identified microbial successions and interactions during NOx pollution and thus enlightened prospective taxa and potential roles of phyllospheric microorganisms in NOx remediation.

Analysis of Postmortem Intestinal Microbiota Successional Patterns with Application in Postmortem Interval Estimation.

Microorganisms play a vital role in the decomposition of vertebrate remains in natural nutrient cycling, and the postmortem microbial succession patterns during decomposition remain unclear. The present study used hierarchical clustering based on Manhattan distances to analyze the similarities and differences among postmortem intestinal microbial succession patterns based on microbial 16S rDNA sequences in a mouse decomposition model. Based on the similarity, seven different classes of succession patterns were obtained. Generally, the normal intestinal flora in the cecum was gradually decreased with changes in the living conditions after death, while some facultative anaerobes and obligate anaerobes grew and multiplied upon oxygen consumption. Furthermore, a random forest regression model was developed to predict the postmortem interval based on the microbial succession trend dataset. The model demonstrated a mean absolute error of 20.01h and a squared correlation coefficient of 0.95 during 15-day decomposition. Lactobacillus, Dubosiella, Enterococcus, and the Lachnospiraceae NK4A136 group were considered significant biomarkers for this model according to the ranked list. The present study explored microbial succession patterns in terms of relative abundances and variety, aiding in the prediction of postmortem intervals and offering some information on microbial behaviors in decomposition ecology.

Supplemental L-Arginine Improves the Embryonic Intestine Development and Microbial Succession in a Chick Embryo Model.

Early colonization of intestinal microbiota plays an important role in intestinal development. However, the microbial succession at an embryonic stage and its assembly patterns induced by prenatal nutrition are unknown. In the present study, we used a chick embryo model to investigate the effects of in ovo feeding (IOF) of L-arginine (Arg) on the intestinal development and microbial succession of embryos. A total of 216 fertile eggs were randomly distributed into 2 groups including the non-injected control group and IOF of Arg group with 7 mg/egg. The results showed that IOF Arg increased the intestinal index, absolute weight of jejunum, and improved jejunal morphology in terms of villus width and surface area (p < 0.05). The relative mRNA expressions of mTOR and 4E-BP1 were up-regulated and accompanied by higher contents of Mucin-2 in the Arg group (p < 0.05). There was a significant elevation in contents of serum glucose and high-density lipoprotein cholesterol, whereas there was a decreased low-density lipoprotein cholesterol in the Arg group (p < 0.05). Additionally, Proteobacteria and Firmicutes were major intestinal bacteria species at the embryonic stage. However, Arg supplementation targeted to shape assembly patterns of microbial succession and then changed microbial composition (p = 0.05). Meanwhile, several short-chain fatty acids (SCFAs)-producing bacteria, such as Roseburia, Blautia, and Ruminococcus were identified as biomarkers in the Arg group (LDA > 3, p < 0.05). Accordingly, significant elevated concentrations of SCFAs, including lactic acid and formic acid, were observed in the Arg group (p < 0.05), accompanied by the higher concentration of butyric acid (0.05 < p < 0.10). In conclusion, prenatal Arg supplementation improved embryonic intestine development by regulating glucose and lipid homeostasis to supply more energy for chick embryos. The possible mechanism could be the roles of Arg in shaping the microbial assembly pattern and succession of the embryonic intestine, particularly the enrichment of potential probiotics. These findings may contribute to exploring nutritional strategies to establish health-promoting microbiota by manipulating prenatal host-microbe interactions for the healthy development of neonates.

MICROBIAL SUCCESSION PATTERN, ISOLATION AND CHARACTERIZATION IN BRASSICA OLERACEA VAR. CAPITATA AT DIFFERENT DECOMPOSITION STAGES

Decomposition is a microbial driven process and man has maximized this natural process in composting which is the biological decomposition of biodegradable solid waste under controlled conditions. In Kenya, waste from Brassica olerecea var. capitata, which is the main vegetable crop accounts for the largest proportion of solid waste generated in food markets. Majority of the population use landfill as a disposal method, although this is neither sustainable nor environmentally friendly. Moreover, cabbage wastes release glucosinolates during the initial stages of decomposition which is deleterious to beneficial biodegradation microbial communities. This study focused on isolating and characterizing microorganisms involved in decomposition, determining microbial succession patterns during decomposing stages, and assessing changes in temperature during decomposition. Leaves of different Brassica cultivars were collected from Githurai food market, Nairobi at four different points. The samples were then piled in sterile bags, three replicates per sample and maintained in a greenhouse for ninety days. Temperature readings were taken after every two days while samples for microbial isolation and characterization were taken after every two weeks. All microorganisms were characterized both morphologically and biochemically. Interestingly, bacterial load CFU/ml differed significantly (P &lt; 0.001) based on the composting stage, where those at stage zero (0) recorded the lowest bacterial load in week 2. Remarkably, 17 bacteria isolates were detected where only three isolates could grow at 55 ºC.

Beach sand oil spills select for generalist microbial populations

The specialization-disturbance hypothesis predicts that, in the event of a disturbance, generalists are favored, while specialists are selected against. This hypothesis has not been rigorously tested in microbial systems and it remains unclear to what extent it could explain microbial community succession patterns following perturbations. Previous field observations of Pensacola Beach sands that were impacted by the Deepwater Horizon (DWH) oil spill provided evidence in support of the specialization-disturbance hypothesis. However, ecological drift as well as uncounted environmental fluctuations (e.g., storms) could not be ruled out as confounding factors driving these field results. In this study, the specialization-disturbance hypothesis was tested on beach sands, disturbed by DWH crude oil, ex situ in closed laboratory advective-flow chambers that mimic in situ conditions in saturated beach sediments. The chambers were inoculated with weathered DWH oil and unamended chambers served as controls. The time series of shotgun metagenomic and 16S rRNA gene amplicon sequence data from a two-month long incubation showed that functional diversity significantly increased while taxonomic diversity significantly declined, indicating a decrease in specialist taxa. Thus, results from this laboratory study corroborate field observations, providing verification that the specialization-disturbance hypothesis can explain microbial succession patterns in crude oil impacted beach sands.

Microbial dynamic and growth potential of selected pathogens in Ethiopian traditional fermented beverages

PurposeThe patterns of microbial succession and the associated physicochemical changes in the course of beverage fermentation determine the safety status of the final product against foodborne pathogens. In this study, the microbial dynamics during fermentation of three Ethiopian traditional fermented beverages (namely, borde, tej, and grawa) and the growth potential of selected foodborne pathogens in ready-to-consume beverages were assessed.MethodsThe raw materials used for lab-scale fermentation of the beverages were bought from open markets of Jimma and Anfilo towns. During fermentation, samples were drawn every 6 h (borde fermentation) and 12 h (grawa and tej fermentation). The dominant microbes of the fermentation phases were determined following standard microbiological methods. The growth potential of Escherichia coli, Salmonella typhimurium, Staphylococcus aureus, Listeria monocytogenes, and Candida albicans in the ready-to-consume beverages were assessed by microbial enumeration over defined storage period.ResultEarly fermentation period of all beverages was dominated by aerobic mesophilic bacteria, staphylococci, and Enterobacteriaceae with highest mean counts (Log CFU/ml) of 6.42 ± 0.10, 5.44 ± 0.08, and 5.40 ± 0.11, respectively. At the end of fermentation, yeast counts (Log CFU/ml) dominated in tej (9.41 ± 0.06) and grawa (7.88 ± 0.02) samples, while lactic acid bacteria dominated in borde sample (7.33 ± 0.07). During fermentation, pH dropped for borde (4.58 ± 0.03 to 4.22 ± 0.01), and grawa (4.18 ± 0.10 to 3.62 ± 0.02), but increased for tej (5.26 ± 0.01 to 5.50 ± 0.03) during the first 24 h, though it dropped later down to 3.81 ± 0.02 at 144th h. All reference pathogens were unable to reach infective dose in grawa and tej samples. However, borde sample supported their growth to infective dose within 24 h. Thus, grawa and tej beverages had the capability of inhibiting growth of pathogens while borde needs basic safety control measures during preparation and storage.ConclusionWith further safety evaluation of the products, the production processes of the three beverages could be scaled up for commercial purposes using defined starter cultures originated from the same beverages. However, the safety status of borde calls for further evaluation for alternative shelf-life extension mechanisms including the introduction of organic preservatives from local products such as medicinal plants.

The effects of dynamic bacterial succession on the flavor metabolites during Baijiu fermentation

The succession of microbial community significantly affect the flavor formation of traditional fermented foods and beverages. Chinese liquor (Baijiu) fermentation is a typical spontaneous solid-state fermentation process driven by natural microbiota. The type of process used to make liquor-craft or industrial-alters the operational environment and the aromatic qualities of the product contributed by various microbial consortia. But differences in microbial community assembly and temporal succession are often overlooked. In this study, we investigated bacterial community dynamics, substrate consumption, and metabolite production during both craft and industrial liquor-making processes (CLP and ILP, respectively). We found that the compositions of bacterial communities were different, even though no significant difference (p > 0.05) was observed in bacterial species between CLP and ILP at the beginning of fermentation. During ILP, glucose was used more rapidly by microflora, leading in turn to a higher ethanol production rate during the early stage of fermentation. The higher rate of ethanol production in ILP shortened the lifetime of bacteria such as Weissella, Pediococcus, Leuconostoc, and Bacillus during the early stage of fermentation. Lactobacillus sp. became dominant earlier in ILP than in CLP. Finally, the change in bacterial community dynamics led to changes in aroma compounds. Using CLP and ILP as a model system, our results illustrate the dynamic nature of Baijiu fermentations and microbial succession patterns therein. This can be applied to optimize the fermentation processes and flavors attributes of this and other fermented foods.

Predicting postmortem interval based on microbial community sequences and machine learning algorithms.

Microbes play an essential role in the decomposition process but were poorly understood in their succession and behaviour. Previous researches have shown that microbes show predictable behaviour that starts at death and changes during the decomposition process. Research of such behaviour enhances the understanding of decomposition and benefits estimating the postmortem interval (PMI) in forensic investigations, which is critical but faces multiple challenges. In this study, we combined microbial community characterization, microbiome sequencing from different organs (i.e. brain, heart and cecum) and machine learning algorithms [random forest (RF), support vector machine (SVM) and artificial neural network (ANN)] to investigate microbial succession pattern during corpse decomposition and estimate PMI in a mouse corpse system. Microbial communities exhibited significant differences between the death point and advanced decay stages. Enterococcus faecalis, Anaerosalibacter bizertensis, Lactobacillus reuteri, and so forth were identified as the most informative species in the decomposition process. Furthermore, the ANN model combined with the postmortem microbial data set from the cecum, which was the best combination among all candidates, yielded a mean absolute error of 1.5 ± 0.8 h within 24-h decomposition and 14.5 ± 4.4 h within 15-day decomposition. This integrated model can serve as a reliable and accurate technology in PMI estimation.

Host-microbiome intestinal interactions during early life: considerations for atopy and asthma development.

The body's largest microbial community, the gut microbiome, is in contact with mucosal surfaces populated with epithelial, immune, endocrine and nerve cells, all of which sense and respond to microbial signals. These mutual interactions have led to a functional coevolution between the microbes and human physiology. Examples of coadaptation are anaerobes Bifidobacteria and Bacteroides, which have adjusted their metabolism to dietary components of human milk, and infant immune development, which has evolved to become reliant on the presence of beneficial microbes. Current research suggests that specific composition of the early-life gut microbiome aligns with the maturation of host immunity. Disruptions of natural microbial succession patterns during gut colonization are a consistent feature of immune-mediated diseases, including atopy and asthma. Here, we catalog recent birth cohorts documenting associations between immune dysregulation and microbial alterations, and summarize the evidence supporting the role of the gut microbiome as an etiological determinant of immune-mediated allergic diseases. Ecological concepts that describe microbial dynamics in the context of the host environment, and a portray of immune and neuroendocrine signaling induced by host-microbiome interactions, have become indispensable in describing the molecular role of early-life microbiome in atopy and asthma susceptibility.

Differential Colonization and Succession of Microbial Communities in Rock and Soil Substrates on a Maritime Antarctic Glacier Forefield.

Glacier forefields provide a unique chronosequence to assess microbial or plant colonization and ecological succession on previously uncolonized substrates. Patterns of microbial succession in soils of alpine and subpolar glacier forefields are well documented but those affecting high polar systems, including moraine rocks, remain largely unexplored. In this study, we examine succession patterns in pioneering bacterial, fungal and algal communities developing on moraine rocks and soil at the Hurd Glacier forefield (Livingston Island, Antarctica). Over time, changes were produced in the microbial community structure of rocks and soils (ice-free for different lengths of time), which differed between both substrates across the entire chronosequence, especially for bacteria and fungi. In addition, fungal and bacterial communities showed more compositional consistency in soils than rocks, suggesting community assembly in each niche could be controlled by processes operating at different temporal and spatial scales. Microscopy revealed a patchy distribution of epilithic and endolithic lithobionts, and increasing endolithic colonization and microbial community complexity along the chronosequence. We conclude that, within relatively short time intervals, primary succession processes at polar latitudes involve significant and distinct changes in edaphic and lithic microbial communities associated with soil development and cryptogamic colonization.

MICROBIAL POPULATION CHANGES IN THE RHIZOSPHERE OF TOMATO SOLANUM LYCOPERSICUM VARIETIES DURING EARLY GROWTH IN GREENHOUSE

The microbial population changes in the rhizosphere of two varieties of tomato: cherry and plum were studied. They were grown in a greenhouse for five weeks. Standard microbiological procedures were applied. Biochemical and cultural characteristics revealed the presence of Bacillus, Enterococcus, Staphylococcus, Rhizobium as bacterial species and Penicillium, Mucor and Saccharomyces as fungal species. Total Heterotrophic Bacterial Counts (THBC) ranged from 1.0 x 106 to 4.8 x 107 cfu/g; 7.0 x 107 to 4.5 x 109 cfu/g and 5.4 x 107 to 3.0 x 109 cfu/g for bare soil, rhizosphere soil of cherry tomato and rhizosphere soil of plum tomato respectively. Total Fungal Counts (TFC) were lower and ranged from 1.3 x 106 to 6.5 x 106 cfu/g, 1.2 x 106 to 8.7 x 106 cfu/g and 1.0 x 106 to 1.2 x 106 cfu/g for bare soil, rhizosphere soil of cherry tomato and rhizosphere soil of plum tomato respectively. The microbial succession pattern further revealed that Bacillus sp, Enterococcus sp, Rhizobium sp, Mucor sp and Saccharomyces sp were the predominant microorganisms present in bare soil and rhizosphere soils of cherry and plum tomatoes. The presence of plant growth promoting rhizobacteria e.g. Bacillus sp and Rhizobium sp, is of great advantage to the early growth of tomato plants as they play important roles in increasing soil fertility, plant growth , and suppression of phytopathogens for healthy plant development and sustainable agriculture.