Microbial Litter Decomposition Research Articles

The Impact of Microbial Interactions on Ecosystem Function Intensifies Under Stress.

A major challenge in ecology is to understand how different species interact to determine ecosystem function, particularly in communities with large numbers of co-occurring species. We use a trait-based model of microbial litter decomposition to quantify how different taxa impact ecosystem function. Furthermore, we build a novel framework that highlights the interplay between taxon traits and environmental conditions, focusing on their combined influence on community interactions and ecosystem function. Our results suggest that the ecosystem impact of a taxon is driven by its resource acquisition traits and the community functional capacity, but that physiological stress amplifies the impact of both positive and negative interactions. Furthermore, net positive impacts on ecosystem function can arise even as microbes have negative pairwise interactions with other taxa. As communities shift in response to global climate change, our findings reveal the potential to predict the biogeochemical functioning of communities from taxon traits and interactions.

Multiple stressors affecting microbial decomposer and litter decomposition in restored urban streams: Assessing effects of salinization, increased temperature, and reduced flow velocity in a field mesocosm experiment

A multitude of anthropogenic stressors impact biological communities and ecosystem processes in urban streams. Prominent among them are salinization, increased temperature, and altered flow regimes, all of which can affect microbial decomposer communities and litter decomposition, a fundamental ecosystem process in streams. Impairments caused by these stressors individually or in combination and recovery of communities and ecosystem processes after release from these stressors are not well understood. To improve our understanding of multiple stressors impacts we performed an outdoor stream mesocosm experiment with 64 experimental units to assess the response of microbial litter decomposers and decomposition. The three stressors we applied in a full-factorial design were increased salinity (NaCl addition, 0.53 mS cm−1 above ambient), elevated temperature (3.5 °C above ambient), and reduced flow velocity (3.5 vs 14.2 cm s−1). After two weeks of stressor exposure (first sampling) and two subsequent weeks of recovery (second sampling), we determined leaf-associated microbial respiration, fungal biomass, and the sporulation activity and community composition of aquatic hyphomycetes in addition to decomposition rates of black alder (Alnus glutinosa) leaves confined in fine-mesh litter bags. Microbial colonization of the litter was accompanied by significant mass loss in all mesocosms. However, there was little indication that mass loss, microbial respiration, fungal biomass, sporulation rate or community composition of aquatic hyphomycetes was strongly affected by either single stressors or their interactions. Two exceptions were temperature effects on sporulation and decomposition rate. Similarly, no notable differences among mesocosms were observed after the recovery phase. These results suggest that microbial decomposers and leaf litter decomposition are either barely impaired by exposure to the tested stressors at the levels applied in our experiment, or that communities in restored urban streams are well adapted to cope with these stressor levels.

Plastic and terrestrial organic matter degradation by the humic lake microbiome continues throughout the seasons.

Boreal freshwaters go through four seasons, however, studies about the decomposition of terrestrial and plastic compounds often focus only on summer. We compared microbial decomposition of 13C-polyethylene, 13C-polystyrene, and 13C-plant litter (Typha latifolia) by determining the biochemical fate of the substrate carbon and identified the microbial decomposer taxa in humic lake waters in four seasons. For the first time, the annual decomposition rate including separated seasonal variation was calculated for microplastics and plant litter in the freshwater system. Polyethylene decomposition was not detected, whereas polystyrene and plant litter were degraded in all seasons. In winter, decomposition rates of polystyrene and plant litter were fivefold and fourfold slower than in summer, respectively. Carbon from each substrate was mainly respired in all seasons. Plant litter was utilized efficiently by various microbial groups, whereas polystyrene decomposition was limited to Alpha- and Gammaproteobacteria. The decomposition was not restricted only to the growth season, highlighting that the decomposition of both labile organic matter and extremely recalcitrant microplastics continues throughout the seasons.

Invasions eliminate the legacy effects of substrate history on microbial nitrogen cycling

AbstractChanges in substrate quality driven by climate, land use, or other forms of global change may represent a strong selective force on microbial communities. Invasion of new taxa into a community through dispersal, evolution, or recolonization could impact the outcome of this environmental selection. Here, we simulated substrate change with a trait‐based model of microbial litter decomposition (DEMENTpy) to assess the legacy effects of past substrate quality and the impact of selection by a new substrate on community decomposition activity. Simulations were run with different levels of invasion, including invasion from communities long‐adapted to the new substrate. Legacy effects were evident with substrate change for native communities differing in composition. Protein was the only substrate that exerted a strong enough selective force to affect community composition. Legacy effects disappeared when invaders came from substrates similar to the new substrate. Together, our simulations demonstrate that substrate quality changes associated with global change can lead to legacy effects on substrate degradation. In decomposing plant litter, such legacy effects can occur if substrate inputs shift to higher protein content and if invasion is low.

Decomposition decreases molecular diversity and ecosystem similarity of soil organic matter

Soil organic matter (SOM) is comprised of a diverse array of reactive carbon molecules, including hydrophilic and hydrophobic compounds, that impact rates of SOM formation and persistence. Despite clear importance to ecosystem science, little is known about broad-scale controls on SOM diversity and variability in soil. Here, we show that microbial decomposition drives significant variability in the molecular richness and diversity of SOM between soil horizons and across a continental-scale gradient in climate and ecosystem type (arid shrubs, coniferous, deciduous, and mixed forests, grasslands, and tundra sedges). The molecular dissimilarity of SOM was strongly influenced by ecosystem type (hydrophilic compounds: 17%, P < 0.001; hydrophobic compounds: 10% P < 0.001) and soil horizon (hydrophilic compounds: 17%, P < 0.001; hydrophobic compounds: 21%, P < 0.001), as assessed using metabolomic analysis of hydrophilic and hydrophobic metabolites. While the proportion of shared molecular features was significantly higher in the litter layer than subsoil C horizons across ecosystems (12 times and 4 times higher for hydrophilic and hydrophobic compounds, respectively), the proportion of site-specific molecular features nearly doubled from the litter layer to the subsoil horizon, suggesting greater differentiation of compounds after microbial decomposition within each ecosystem. Together, these results suggest that microbial decomposition of plant litter leads to a decrease in SOM α-molecular diversity, yet an increase in β-molecular diversity across ecosystems. The degree of microbial degradation, determined by the position in the soil profile, exerts a greater control on SOM molecular diversity than environmental factors, such as soil texture, moisture, and ecosystem type.

Tracer or toxicant: Does stable isotope labeling affect central processes in aquatic food webs?

Stable isotope analysis (SIA) is an elementary technique in food web ecology, but its insights become increasingly ambiguous in complex systems. One approach to elevate the utility of SIA in such systems is the use of heavy isotope tracers (i.e., labeling). However, the fundamental assumption that the addition of such tracers does not affect in situ conditions has been challenged. This study tests if labeling is suitable for autotrophy-based and detritus-based aquatic food webs. For the former, the survival and reproduction of Daphnia magna fed with phytoplankton cultured at different levels of 15N addition were assessed. For the latter, the microbial decomposition of leaf litter was assessed at the same tracer levels. While no significant differences were observed, effect patterns were comparable to a previous study, supporting the isotopic redundancy hypothesis that postulates discrete quantum mechanical states at which the reaction speeds of metabolic processes are altered. Although physiology (reproduction) and activity (microbial decomposition) might not be altered to an ecologically significant level, labeling with heavy stable isotopes could potentially affect isotopic fractionation in biochemical processes and bias conclusions drawn from resulting SI ratios.

Future climate conditions accelerate wheat straw decomposition alongside altered microbial community composition, assembly patterns, and interaction networks

Although microbial decomposition of plant litter plays a crucial role in nutrient cycling and soil fertility, we know less about likely links of specific microbial traits and decomposition, especially in relation to climate change. We study here wheat straw decomposition under ambient and manipulated conditions simulating a future climate scenario (next 80 years) in agroecosystems, including decay rates, macronutrient dynamics, enzyme activity, and microbial communities. We show that future climate will accelerate straw decay rates only during the early phase of the decomposition process. Additionally, the projected climate change will increase the relative abundance of saprotrophic fungi in decomposing wheat straw. Moreover, the impact of future climate on microbial community assembly and molecular ecological networks of both bacteria and fungi will strongly depend on the decomposition phase. During the early phase of straw decomposition, stochastic processes dominated microbial assembly under ambient climate conditions, whereas deterministic processes highly dominated bacterial and fungal communities under simulated future climate conditions. In the later decomposition phase, similar assembly processes shaped the microbial communities under both climate scenarios. Furthermore, over the early phases of decomposition, simulated future climate enhanced the complexity of microbial interaction networks. We concluded that the impact of future climate on straw decay rate and associated microbial traits like assembly processes and inter-community interactions is restricted to the early phase of decomposition.

Temperature Sensitivity of Microbial Litter Decomposition in Freshwaters: Role of Leaf Litter Quality and Environmental Characteristics

Ongoing global warming is expected to alter temperature-dependent processes. Nevertheless, how co-occurring local drivers will influence temperature sensitivity of plant litter decomposition in lotic ecosystems remains uncertain. Here, we examined the temperature sensitivity of microbial-mediated decomposition, microbial respiration, fungal biomass and leaf nutrients of two plant species varying in litter quality. We also assessed whether the type of microbial community and stream water characteristics influence such responses to temperature. We incubated alder (Alnus glutinosa) and eucalypt (Eucalyptus globulus) litter discs in three streams differing in autumn–winter water temperature (range 4.6–8.9 °C). Simultaneously, in laboratory microcosms, litter discs microbially conditioned in these streams were incubated at 5, 10 and 15 °C with water from the conditioning stream and with a water control from an additional stream. Both in the field and in the laboratory, higher temperatures enhanced litter decomposition rates, except for eucalypt in the field. Leaf quality modified the response of decomposition to temperature in the field, with eucalypt leaf litter showing a lower increase, whereas it did not in the laboratory. The origin of microbial community only affected the decomposition rates in the laboratory, but it did not modify the response to temperature. Water quality only defined the phosphorus content of the leaf litter or the fungal biomass, but it did not modify the response to temperature. Our results suggest that the acceleration in decomposition by global warming will be shaped by local factors, mainly by leaf litter quality, in headwater streams.

Microbial colonization and decomposition of commercial tea and native alder leaf litter in temperate streams

Leaf litter decomposition in streams is a fundamental ecosystem process that allows for the cycling of nutrients. The rate at which leaf litter decomposes is greatly controlled by its intrinsic characteristics. However, intraspecific variation in leaf litter characteristics poses a major challenge for large-scale studies aiming at identifying the environmental moderators of leaf litter decomposition. Thus, several standardized organic substrates have been proposed as surrogates for leaf litter. Tea bags were proposed as a standardized alternative to leaf litter for studies in soil and their use in aquatic ecosystems has been growing in recent years. It is therefore necessary to evaluate how tea is colonized and decomposed by aquatic microbial decomposers to assess its usefulness as a surrogate for leaf litter in litter decomposition studies. Here we compared the microbial colonization (based on the reproductive activity of aquatic hyphomycetes) and decomposition of green and rooibos teas and native alder leaf litter in two streams differing in environmental conditions. Colonization of green tea was lower than that of alder leaf litter, but their decomposition rates were similar. In contrast, colonization of rooibos tea was similar to that of alder leaf litter, but it decomposed 3–4 × slower. Results were consistent in both streams. Despite differences in magnitude, dynamics of microbial colonization and decomposition of tea were similar to those of alder leaf litter and were sensitive to substrate characteristics. Tea may be used as a surrogate for leaf litter in studies addressing microbial-driven leaf litter decomposition in streams.

Distinct microbial communities alter litter decomposition rates in a fertilized coastal plain wetland

AbstractHuman activities have led to increased deposition of nitrogen (N) and phosphorus (P) into soils. Nutrient enrichment of soils is known to increase plant biomass and rates of microbial litter decomposition. However, interacting effects of hydrologic position and associated changes to soil moisture can constrain microbial activity and lead to unexpected nutrient feedbacks on microbial community structure–function relationships. Examining feedbacks of nutrient enrichment on decomposition rates is essential for predicting microbial contributions to carbon (C) cycling as atmospheric deposition of nutrients persists. This study explored how long‐term nutrient addition and contrasting litter chemical composition influenced soil bacterial community structure and function. We hypothesized that long‐term nutrient enrichment of low fertility soils alters bacterial community structure and leads to higher rates of litter decomposition especially for low C:N litter, but low‐nutrient and dry conditions limit microbial decomposition of high C:N ratio litter. We leveraged a long‐term fertilization experiment to test how nutrient enrichment and hydrologic manipulation (due to ditches) affected decomposition and soil bacterial community structure in a nutrient‐poor coastal plain wetland. We conducted a litter bag experiment and characterized litter‐associated and bulk soil microbiomes using 16S rRNA bacterial sequencing and quantified litter mass losses and soil physicochemical properties. Results revealed that distinct bacterial communities were involved in decomposing higher C:N ratio litter more quickly in fertilized compared to unfertilized soils especially under drier soil conditions, while decomposition rates of lower C:N ratio litter were similar between fertilized and unfertilized plots. Bacterial community structure in part explained litter decomposition rates, and long‐term fertilization and drier hydrologic status affected bacterial diversity and increased decomposition rates. However, community composition associated with high C:N litter was similar in wetter plots with available nitrate detected, regardless of fertilization treatment. This study provides insight into long‐term fertilization effects on soil bacterial diversity and composition, decomposition, and the increased potential for soil C loss as nutrient enrichment and hydrology interact to affect historically low‐nutrient ecosystems.

Climate change drivers alter root controls over litter decomposition in a semi-arid grassland

Plant roots are the primary source of soil organic carbon (C) and critically support the growth and activities of microbes in the rhizosphere. Climate change factors may, however, modify root-microbial interactions and impact C dynamics in the rhizosphere. Yet, the direction and magnitude of interactive climate change effects, as well as the underlying mechanisms, remain unclear. Here we show evidence from a field experiment demonstrating that warming and precipitation changes strengthen root controls over litter decomposition in a semi-arid grassland. While warming and precipitation reduction suppressed microbial decomposition of root litter regardless of the root presence, precipitation increase stimulated litter decomposition only in the absence of roots, suggesting that plant competition for water constraints the activities of saprophytic microbes. Root presence increased microbial biomass but reduced microbial activities such as respiration, C cycling enzymes and litter decomposition, indicating that roots exert differential effects on microbes through altering C or water availability. In addition, nitrogen (N) input significantly reduced microbial biomass and microbial activities (respiration). Together, these results showed that alterations in soil moisture induced by climate change drivers critically modulate root controls over microbial decomposition in soil. Our findings suggest that warming-enhanced plant water utilization, combined with N-induced suppression of microbes, may provide a unique mechanism through which moderate increases in precipitation, warming and N input interactively suppress microbial decomposition, thereby facilitating short-term soil C sequestration in the arid and semi-arid grasslands.

Network analysis and subsequent culturing reveal keystone taxa involved in microbial litter decomposition dynamics

Plant litter decomposition in the soil is governed by microorganisms such as bacteria and fungi that colonize lignocellulose residues during the decomposition process, and thus, the interplay of bacterial and fungal communities can yield insight into the lignocellulose decomposition dynamics. Previous studies have mainly investigated litter decomposing communities in microcosms or ex-situ conditions or at a single soil ecosystem. Here we conducted a 12 week-long litter decomposition experiment to explore how the temporal dynamics of soil enzyme activities and microbial communities are linked to litter decomposition under three different land use sites (forestland, farmland, and abandoned farmland) in Nanjing, China. We found that litter decomposition in the forestland was the highest among the three land use sites. Then, using a multifactorial approach, we showed that this higher decomposition rate in forest soils is determined by microbial communities with higher ligninolytic enzyme activities, higher diversity, and a less complex but more specialized network. Chryseobacterium in bacteria, and Fusarium, Aspergillus and Penicillium in fungi were the keystone taxa in networks across three land use types. We conducted subsequent culturing that further confirmed the strong decomposition ability and enzyme activities of these taxa, indicating their importance for microbial litter decomposition. As such, this is one of the first studies to validate the role of keystone taxa for litter decomposition, and it demonstrates that co-occurrence network scores can be used for statistical identification of putative keystone taxa for further screening and linking to microbiome functioning. Overall, we show that land use alters the composition and network structure of soil microbiota that determine the litter decomposition. Our study also reveals that specialized keystone taxa are involved in the decomposition dynamics, and highlights an opportunity of harnessing such taxa for manipulating lignocellulose decomposition in soil ecosystems.

Can Microplastics from Personal Care Products Affect Microbial Decomposition of Plant Litter in Streams? An Insight to the Mixed Effects of Microplastics and Silver Nanoparticles

Can Microplastics from Personal Care Products Affect Microbial Decomposition of Plant Litter in Streams? An Insight to the Mixed Effects of Microplastics and Silver Nanoparticles

Effects of sulfonamide antibiotics on aquatic microbial community composition and functions

Knowledge on interactions among microbial communities colonizing various streambed substrata (e.g. cobbles, sediment, leaf-litter etc.) is essential when investigating the functioning of stream ecosystems. However, these interactions are often forgotten when assessing the responses of aquatic microbial communities to chemical contamination. Using a stream microcosm approach, the respective impact of two sulfonamide antibiotics (sulfamethoxazole and sulfamethazine) on the ability of microbial heterotrophs to decompose alder leaves was investigated in the presence or absence of periphyton. Our hypothesis suggested that sulfonamides would negatively impair microbial litter decomposition and that periphyton could possibly alleviate this effect by stimulating microbial decomposer activity through a priming effect. Results showed that the presence of periphyton enriched water with oxygen and labile dissolved organic carbon forms. However, these labile organic carbon sources did not stimulate leaf-litter decomposition but mostly decoupled microbial decomposer activity from particulate organic matter to dissolved organic matter through negative priming. Also, the two sulfonamide molecules did not affect the leaf-litter decomposition process but significantly decreased bacterial biomass accrual on leaves. The reduction of bacteria was concomitant with an increase in biomass-specific β-glucosidase activity and this was attributed to a stress response from bacteria to sulfonamides. Further research looking at microbial interactions would provide for better assessment of chemical contamination effects in communities and processes in stream ecosystems.

Volatile organic compounds from leaf litter decomposition alter soil microbial communities and carbon dynamics.

Investigations into the transfer of carbon from plant litter to underlying soil horizons have primarily focused on the leaching of soluble carbon from litter belowground or the mixing of litter directly into soil. However, previous work has largely ignored the role of volatile organic compounds (VOCs) released during litter decomposition. Unlike most leaf carbon, these litter-derived VOCs are able to diffuse directly into the soil matrix. Here, we used a 99-d microcosm experiment to track VOCs produced during microbial decomposition of 13 C-labeled leaf litter into soil carbon fractions where the decomposing litters were only sharing headspace with the soil samples, thus preventing direct contact and aqueous movement of litter carbon. We also determined the effects of these litter-derived VOCs on soil microbial community structure. We demonstrated that the litter VOCs contributed to all measured soil carbon pools. Specifically, VOC-derived carbon accounted for 2.0, 0.61, 0.18, and 0.08% of carbon in the microbial biomass, dissolved organic matter, mineral-associated organic matter, and particulate organic matter pools, respectively. We also show that litter-derived VOCs can affect soil bacterial and fungal community diversity and composition. These findings highlight the importance of an underappreciated pathway where VOCs alter soil microbial communities and carbon dynamics.

Invasion of Native Riparian Forests by Acacia Species Affects In-Stream Litter Decomposition and Associated Microbial Decomposers.

The invasion of native riparian forests by exotic tree species can lead to profound changes in the ecological integrity of freshwater ecosystems. We assessed litter decomposition of native (Alnus glutinosa and Quercus robur) and invasive (Acacia melanoxylon and Acacia dealbata) tree species, and associated microbial activity and community structure, after being immersed for conditioning in 3 reference and 3 "invaded" streams in Serra da Lousã (central Portugal) and used in microcosms simulating stream conditions. Litter decomposition differed among species, in the order: Al. glutinosa > Q. robur > (Ac. melanoxylon ~ Ac. dealbata). Alnus glutinosa litter decomposed faster probably because it was soft and had high nitrogen concentration for decomposers. Quercus robur litter decomposed slower most likely because it was tough and had high polyphenol and low nitrogen concentrations. Acacia melanoxylon litter was the toughest and had a thick cuticle that likely acted as a physical barrier for microbial colonization. In Ac. dealbata, the small-sized leaflets and high lignin concentration may have limited microbial litter decomposition. Litter decomposition was faster in "invaded" streams, probably because they were N-limited and increases in nitrogen concentration in water, promoted by Acacia species invasion, stimulated microbial activity on litter. The aquatic hyphomycete community structure differed among litter species and between stream types, further suggesting that microbes were sensitive to litter characteristics and water nutrient concentrations. Overall, the invasion of native riparian forests by Acacia species may affect microbial decomposer activity, thus altering important stream ecosystem processes, such as litter decomposition and nutrient cycles.

Fate of leaf litter in restored Kandelia obovata (S. L.) mangrove forests with different ages in Jiulong River Estuary, China

Ecological processing of leaf litter plays important roles in carbon dynamics of mangrove forests. Fate of leaf litter, that is, removal by crabs, microbial decomposition, and tidal export was quantified in two restored Kandelia obovata forests with ages of 24 years and 48 years, respectively, from December 2009 to November 2010. Crab abundance was also investigated to test the role of crabs in leaf litter processing. Daily leaf litter production was 1.064 ± 0.108 g C m−2 day−1 at the 24‐year forest and was 0.689 ± 0.040 g C m−2 day−1 at the 48‐year forest. Annual mean removal of leaf litter by crabs was lower at the 24‐year forest than at the 48‐year forest (0.177 ± 0.046 g C m−2 day−1 vs. 0.220 ± 0.050 g C m−2 day−1), due to a higher crab abundance at the older forest. Microbial decomposition and change in standing stock of leaf litter on the forest floor made a negligible contribution to the annual leaf litter production. Tidal exports of leaf litter were estimated as 0.875 ± 0.090 g C m−2 day−1 and 0.458 ± 0.086 g C m−2 day−1 at the 24‐year and 48‐year forests, respectively, accounting for 82.2% and 66.5% of their daily leaf litter production. Turnover rate of leaf litter was higher at the younger forest (1.7 ± 0.4 day−1) than the older forest (1.2 ± 0.3 day−1). Removal of leaf litter by crabs was higher in warm months while tidal export of leaf litter showed a much less apparent seasonal pattern. Spatial variations of crab removal and tidal export of leaf litter with forest zones were observed within each forest, while microbial decomposition of leaf litter was comparable among the different zones. These indicated that the ecosystem functions of restored mangrove forest could not reach a level equivalent to those of a mature forest even 24 years after restoration.

Stronger effects of litter origin on the processing of conifer than broadleaf leaves: A test of home‐field advantage of stream litter breakdown

Abstract Ecological shifts that enhance the efficiency of resource acquisition by consumers can affect the fate of resource subsidies in recipient ecosystems. To date, findings have been mixed about whether plant litter breakdown by stream decomposers is faster in locations where the litter originates from (i.e. home region) compared with other locations (away region). This phenomenon, known as home‐field advantage (HFA), may be influenced by litter quality and particularly decomposer groups (shredders versus microbes), rather than being an inherent consequence of the breakdown of locally native litter. We studied the effects of HFA on litter breakdown and litter‐associated communities in streams within mid‐ to late‐successional forests. Two pairs of riparian broadleaf and one pair of conifer litter species with contrasting chemical quality were reciprocally incubated across two temperate regions (˜3,000 km apart). Species in each pair are congeneric and allopatric. The HFA was assessed using within‐pair litter comparisons in home and away regions. Coarse‐ and fine‐mesh litterbags were used to separate the contributions to litter breakdown by microbial decomposition and shredder feeding. Conifer litter species used in this study were more recalcitrant than broadleaf litter species. Consequently, there was a significant positive HFA for the microbial decomposition of conifer litter. In contrast, there was no HFA for either microbial or shredder‐mediated breakdown of broadleaf litter, which might have been overridden by catchment‐scale differences in biophysical variables affecting breakdown. The effects of HFA on shredder colonisation and feeding on broadleaf litter were more variable among streams. Numerically abundant shredder taxa tended to have higher rates of colonisation and consumption on higher‐quality litter than on low‐quality litter, irrespective of litter origin. Our results suggest that prior (evolutionary and/or contemporary) litter exposure could strongly influence the litter‐processing capacity of microbial decomposers, but not shredders, at the community level. In particular, microbial decomposers specialised in degrading conifer litter probably had lower resource‐use plasticity than those processing broadleaf litter. Inter‐stream differences in riparian vegetation and habitat conditions could influence the HFA through altering the litter exposure history of decomposer communities. Our findings highlight the importance of prior litter–microbe interactions in determining the rates of microbial decomposition of native and exotic litter species.

Decomposition processes in coastal lagoons and their implications for the assessment of ecological health

Abstract Aside from structural indicators, functional indicators have been suggested as a tool for assessing the health of transitional water ecosystems. The aim of this study was to assess the potential for the use of plant litter decomposition as a functional indicator of ecosystem health in coastal lagoons. A field experiment was conducted to assess the decomposition rate of Ruppia maritima enclosed in coarse and fine mesh litterbags and incubated in 10 Mediterranean coastal lagoons that conform to a gradient of ecological status produced by anthropogenic impacts as determined by a structural quality index. The microbial decomposition rate in fine mesh litterbags increased linearly along the ecological gradient. However, this relationship was not observed for the overall decomposition rate in coarse mesh bags. Decomposition rates in coarse mesh bags were negatively related to macroinvertebrate diversity, indicating that, in transitional habitats, such as coastal lagoons, high biodiversity is not a prerequisite for successful ecosystem functioning. The results suggest that functional indicators, such as the microbial litter decomposition process, should be used in addition to structural ones to detect anthropogenic‐derived environmental perturbations in coastal lagoons.

Modeling the effects of litter stoichiometry and soil mineral N availability on soil organic matter formation using CENTURY-CUE (v1.0)

Abstract. Microbial decomposition of plant litter is a crucial process for the land carbon (C) cycle, as it directly controls the partitioning of litter C between CO2 released to the atmosphere versus the formation of new soil organic matter (SOM). Land surface models used to study the C cycle rarely considered flexibility in the decomposer C use efficiency (CUEd) defined by the fraction of decomposed litter C that is retained as SOM (as opposed to be respired). In this study, we adapted a conceptual formulation of CUEd based on assumption that litter decomposers optimally adjust their CUEd as a function of litter substrate C to nitrogen (N) stoichiometry to maximize their growth rates. This formulation was incorporated into the widely used CENTURY soil biogeochemical model and evaluated based on data from laboratory litter incubation experiments. Results indicated that the CENTURY model with new CUEd formulation was able to reproduce differences in respiration rate of litter with contrasting C : N ratios and under different levels of mineral N availability, whereas the default model with fixed CUEd could not. Using the model with flexible CUEd, we also illustrated that litter quality affected the long-term SOM formation. Litter with a small C : N ratio tended to form a larger SOM pool than litter with larger C : N ratios, as it could be more efficiently incorporated into SOM by microorganisms. This study provided a simple but effective formulation to quantify the effect of varying litter quality (N content) on SOM formation across temporal scales. Optimality theory appears to be suitable to predict complex processes of litter decomposition into soil C and to quantify how plant residues and manure can be harnessed to improve soil C sequestration for climate mitigation.