Ability Of Microbial Community Research Articles

The effect of ammonia concentration on the treatment of bio electrochemical leachate using MFCs technology.

Microbial fuel cells (MFCs) have garnered attention in bio-electrochemical leachate treatment systems. The most common forms of inorganic ammonia nitrogen are ammonium ([Formula: see text]) and free ammonia. Anaerobic digestion can be inhibited in both direct (changes in environmental conditions, such as fluctuations in temperature or pH, can indirectly hinder microbial activity and the efficiency of the digestion process) and indirect (inadequate nutrient levels, or other conditions that indirectly compromise the microbial community's ability to carry out anaerobic digestion effectively) ways by both kinds. The performance of a double-chamber MFC system-composed of an anodic chamber, a cathode chamber with fixed biofilm carriers (carbon felt material), and a Nafion 117 exchange membrane is examined in this work to determine the impact of ammonium nitrogen ([Formula: see text]) inhibition. MFCs may hold up to 100mL of fluid. Therefore, the bacteria involved were analysed using 16S rRNA. At room temperature, with a concentration of 800mg L-1 of ammonium nitrogen and 13,225mg L-1 of chemical oxygen demand (COD), the study produced a considerable power density of 234 mWm-3. It was found that [Formula: see text] concentrations above 800mg L-1 have an inhibitory influence on power output and treatment effectiveness. Multiple routes removed the most nitrogen ([Formula: see text]-N: 87.11 ± 0.7%, NO2 -N: 93.17 ± 0.2% and TN: 75.24 ± 0.3%). Results from sequencing indicate that the anode is home to a rich microbial community, with anammox (6%), denitrifying (6.4%), and electrogenic bacteria (18.2%) making up the bulk of the population. Microbial fuel cells can efficiently and cost-effectively execute anammox, a green nitrogen removal process, in landfill leachate.

Decoding the PLFA profiling of microbial community structure in soils contaminated with municipal solid wastes

This study aimed to assess the influence of municipal solid waste (MSW) disposal on soil microbial communities. Soil samples from 20 different locations of an MSW dumping site contaminated with toxic heavy metals (HMs) and a native forest (as control) were collected for phospholipid fatty acid (PLFA) profiling to predict microbial community responses towards unsegregated disposal of MSW. PLFA biomarkers specific to arbuscular mycorrhizal fungi (AMF), Gram-negative and Gram-positive bacteria, fungi, eukaryotes, actinomycetes, anaerobes, and microbial stress markers-fungi: bacteria (F/B) ratio, Gram-positive/Gram-negative (GP/GN) ratio, Gram-negative stress (GNStr) ratio and predator/prey ratio along with AMF spore density and the total HM content (Cu, Cr, Cd, Mn, Zn, and Ni) were assessed.The results showed that all of the PLFA microbial biomarkers and the F/B ratio were positively correlated, while HMs and microbial stress markers were negatively correlated. The significant correlation of AMF biomass with all microbial groups, the F/B ratio, and T. PLFA confirmed its significance as a key predictor of microbial biomass. With AMF and T. PLFA, Cd and Cr had a weak or negative connection. Among the toxic HMs, Zn and Cd had the greatest impact on microbial populations. Vegetation did not have any significant effect on soil microbial communities. This research will aid in the development of bioinoculants for the bioremediation of MSW-polluted sites and will improve our understanding of the soil microbial community's ability to resist, recover, and adapt to toxic waste contamination.

Towards quantifying microbial dispersal in the environment.

Towards quantifying microbial dispersal in the environment.

Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean

Filamentous and colony-forming cells within the cyanobacterial genus Trichodesmium might account for nearly half of nitrogen fixation in the sunlit ocean, a critical mechanism that sustains plankton's primary productivity. Trichodesmium has long been portrayed as a diazotrophic genus. By means of genome-resolved metagenomics, here we reveal that nondiazotrophic Trichodesmium species not only exist but also are abundant and widespread in the open ocean, benefiting from a previously overlooked functional lifestyle to expand the biogeography of this prominent marine genus. Near-complete environmental genomes for those closely related candidate species reproducibly shared functional features including a lack of genes related to nitrogen fixation, hydrogen recycling, and hopanoid lipid production concomitant with the enrichment of nitrogen assimilation genes. Our results elucidate fieldwork observations of Trichodesmium cells fixing carbon but not nitrogen. The Black Queen hypothesis and burden of low-oxygen concentration requirements provide a rationale to explain gene loss linked to nitrogen fixation among Trichodesmium species. Disconnecting taxonomic signal for this genus from a microbial community's ability to fix nitrogen will help refine our understanding of the marine nitrogen balance. Finally, we are reminded that established links between taxonomic lineages and functional traits do not always hold true.

Anaerobic oxidation of petroleum hydrocarbons in enrichment cultures from sediments of the Gorevoy Utes natural oil seep under methanogenic and sulfate-reducing conditions.

This article presents the first experimental data on the ability of microbial communities from sediments of the Gorevoy Utes natural oil seep to degrade petroleum hydrocarbons under anaerobic conditions. Like in marine ecosystems associated with oil discharge, available electron acceptors, in particular sulfate ions, affect the composition of the microbial community and the degree of hydrocarbon conversion. The cultivation of the surface sediments under sulfate-reducing conditions led to the formation of a more diverse bacterial community and greater loss of n-alkanes (28%) in comparison to methanogenic conditions (6%). Microbial communities of both surface and deep sediments are more oriented to degrade polycyclic aromatic hydrocarbons (PAHs), to which the degree of the PAH conversion testifies (up to 46%) irrespective of the present electron acceptors. Microorganisms with the uncultured closest homologues from thermal habitats, sediments of mud volcanoes, and environments contaminated with hydrocarbons mainly represented microbial communities of enrichment cultures. The members of the phyla Firmicutes, Chloroflexi, and Caldiserica (OP5), as well as the class Deltaproteobacteria and Methanomicrobia, were mostly found in enrichment cultures. The influence of gas-saturated fluids may be responsible for the presence in the bacterial 16S rRNA gene libraries of the sequences of "rare taxa": Planctomycetes, Ca. Atribacteria (OP9), Ca. Armatimonadetes (OP10), Ca. Latescibacteria (WS3), Ca. division (AC1), Ca. division (OP11), and Ca. Parcubacteria (OD1), which can be involved in hydrocarbon oxidation.

Two decades of altered snow cover does not affect soil microbial ability to catabolize carbon compounds in an oceanic alpine heath

Snow strongly affects ecosystem functioning in alpine environments with potential carry-over effects outside of snow periods. However, it is unclear whether changes in snow cover affect microbial community functioning in summer. In a field experiment, we tested whether manipulation of snow cover affected the functional capabilities of the microbial community either directly, or indirectly through concomitant changes in the vegetation. While 23 years of differential snow depth and persistence fundamentally changed the vegetation composition, the microbial community's ability to catabolize a range of carbon compounds was not altered. Instead, soil moisture content was the key driver of carbon catabolism by the microbial community.

Microbial Degradation of Phenanthrene in Pristine and Contaminated Sandy Soils.

Phenanthrene mineralisation studies in both pristine and contaminated sandy soils were undertaken through detailed assessment of the activity and diversity of the microbial community. Stable isotope probing (SIP) was used to assess and identify active 13C-labelled phenanthrene degraders. Baseline profiling indicated that there was little difference in fungal diversity but a significant difference in bacterial diversity dependent on contamination history. Identification of dominant fungal and bacterial species highlighted the presence of organisms capable of degrading various petroleum-based compounds together with other anthropogenic compounds, regardless of contamination history. Community response following a simulated contamination event (14C-phenanthrene) showed that the microbial community in deep pristine and shallow contaminated soils adapted most to the presence of phenanthrene. The similarity in microbial community structure of well-adapted soils demonstrated that a highly adaptable fungal community in these soils enabled a rapid response to the introduction of a contaminant. Ten fungal and 15 bacterial species were identified as active degraders of phenanthrene. The fungal degraders were dominated by the phylum Basidiomycota including the genus Crypotococcus, Cladosporium and Tremellales. Bacterial degraders included the genera Alcanivorax, Marinobacter and Enterococcus. There was little synergy between dominant baseline microbes, predicted degraders and those that were determined to be actually degrading the contaminant. Overall, assessment of baseline microbial community in contaminated soils provides useful information; however, additional laboratory assessment of the microbial community's ability to degrade pollutants allows for better prediction of the bioremediation potential of a soil.

Insights into functional genes and taxonomical/phylogenetic diversity of microbial communities in biological heap leaching system and their correlation with functions.

Although the taxonomical/phylogenetic diversity of microbial communities in biological heap leaching systems has been investigated, the diversity of functional genes was still unclear, and, especially, the differentiation and the relationships of diversity and functions of microbial communities in leaching heap (LH) and leaching solution (LS) were also still unclear. In our study, a functional gene array (GeoChip 5.0) was employed to investigate the functional gene diversity, and 16S rRNA gene sequencing was used to explore the taxonomical/phylogenetic diversity of microbial communities in LH and LS subsystems of Dexing copper mine (Jiangxi, China). Detrended correspondence analysis (DCA) showed that both functional gene structure and taxonomical/phylogenetic structure of microbial communities were significantly different between LH and LS. Signal intensities of genes, including genes for sulfur oxidation (e.g., soxB), metal homeostasis (e.g., arsm), carbon fixation (e.g., rubisco), polyphosphate degradation (e.g., ppk), and organic remediation (e.g., hydrocarbons) were significantly higher in LH, while signal intensities of genes for carbon degradation (e.g., amyA), polyphosphate synthesis (e.g., ppx), and sulfur reduction (e.g., dsrA) were significantly higher in LS. Further inspection revealed that microbial communities in LS and LH were dominated by Acidithiobacillus and Leptospirillum. However, rare species were relatively higher abundant in LH. Additionally, diversity index of functional genes was significantly different in LS (9.915±0.074) and LH (9.781±0.165), and the taxonomical/phylogenetic diversity index was also significantly different in LH (4.398±0.508) and LS (3.014±0.707). Functional tests, including sulfur-oxidizing ability, iron-oxidizing ability, and pyrite bioleaching ability, showed that all abilities of microbial communities were significantly stronger in LH than those in LS. Further studies found that most key genes (e.g., soxC and dsrA), rather than functional gene diversity index, were significantly correlated with abilities of microbial communities by linear regression analysis and Pearson correlation tests. In addition, the abilities were significantly correlated with taxonomical/phylogenetic diversity index and some rare species (e.g., Ferrithrix).

Changes in DMS production and flux in relation to decadal shifts in ocean circulation

A fundamental question is are the biological processes regulating dimethylsulphide (DMS) production by the marine ecosystem interconnected and responding to atmospheric or ocean signals at decadal timescales? Related to this is a need to quantify how climate change affects these interconnections and understand the expected levels of natural variability on decadal timescales. To explore this we have used indicators of climate variability [the Gulf Stream North Wall (GSNW) and the North Atlantic Oscillation (NAO) indices] as probes to demonstrate that a marine ecosystem model, incorporating DMS production, can extract and amplify a climatic signal, which is spread across a variety of meteorological variables. The GSNW signal is imparted through the wind and cloud forcing, despite the fact there was not significant relationship observed between the GSNW index and the meteorological forcing data. The model simulations appear to reproduce observed decadal variability in phytoplankton community structure in the eastern North Atlantic and imply that DMS(P) biogeochemistry may vary on decadal timescales as a consequence of changes in community structure. The GSNW index is a potential indicator of such changes and there may have been a regime shift in DMSP production in the eastern North Atlantic coincident with that observed for plankton. Sensitivity analysis indicates that the impact of climate variability on DMS biogeochemistry may potentially be damped by the ability of microbial communities to adapt physiologically to the effects of changes in light and nutrients.

The influence of single and multiple applications of pyrene on the evolution of pyrene catabolism in soil

The influence of pyrene added in a single application (0, 50, 100 and 200 mg kg −1) was investigated in multiple applications (1 × 50, 2 × 50 and 4 × 50 mg kg −1) on the evolution of catabolic activity in a pristine pasture soil. The microbial community's ability to degrade pyrene was assessed at 0, 4, 8 and 12 weeks by the mineralization of added 14C-pyrene. Significant mineralization (>5%) of added 14C-pyrene only occurred after 4 weeks soil–pyrene contact time in most of the pyrene-amended soils. Pyrene-amended soils showed statistically significantly shorter ( P < 0.05) lag times compared to the control soil after 8 and 12 weeks soil–pyrene contact time. Further, the rates of degradation increased in the presence of pyrene, peaking at 8 weeks. In terms of the overall extents of pyrene mineralization, there were statistically significant increases ( P < 0.05) between 4 and 8 weeks, with little difference between 8 and 12 weeks, with the general trend that an increase in pyrene concentration resulted in higher levels of mineralization. Increasing the concentration and number of pyrene additions can have a significant impact on the adaptation of the soil microflora to degrade pyrene over time.

Wastewater dewatering polymer affect on biosolids odor emissions and microbial activity.

Odor emissions and microbial activity associated with biosolids dewatered using seven different polyacrylamide cationic polymers were investigated. Nitrogen, sulfur, ketone, and odor unit emissions, and biosolids microbial community metabolic profiles were measured for biosolids containing each polymer. Ammonia represented more than 98% of total nitrogen flux for all polymers, with small concentrations of trimethyl amine. Dimethyl disulfide and carbon disulfide fluxes summed represented 87 to 97% of the sulfur flux for all polymers, with lesser quantities of dimethyl sulfide. Maximum dimethyl disulfide, ammonia, and trimethyl amine concentrations were estimated to be 3.4, 3.2, and 13.5 times greater than published detection limits, respectively. Maximum dimethyl sulfide, carbon disulfide, acetone, and methyl ethyl ketone concentrations were estimated to be 0.028, 0.007, 0.002, and 0.0006 times less than published detection limits, respectively. All treatments were found to volatilize equal odor unit emissions (with the exception of one polymer), and polymers were not found to dramatically affect odor emission from biosolids application. Metabolic fingerprints revealed differences in the ability of microbial communities from certain polymer treatments to degrade amino acids as a sole carbon substrate. In addition, odor unit emissions were significantly correlated with potential for amino acid decomposition.

Microbial Mats As a Source of Carbonate Sediments in the Late Precambrian: Evidence from the Linok Formation, the Middle Riphean of the Turukhansk Uplift, Siberia

The Linok Formation is made up of clayey and carbonate strata, 180–300 m thick, formed at the terminal Middle Riphean on the northwestern margin of the Siberian Platform. In the modern structure, it is exposed in the lower part of the Turukhansk Uplift section. The sediments accumulated in the distal part of the epiplatformal basin as a symmetrical transgressive–regressive cycle. Its lower part represents a deep-water basin environment with the mixed carbonate–clayey sedimentation, whereas the upper part reflects the origination and evolution of a carbonate platform. Microstructures discussed in this work suggest not only the ancient existence of benthic microbial assemblages (mats) but their active influence upon the facies pattern of sediments as well. The influence was determined by the ability of mat-forming communities to produce carbonate sediments under certain environmental conditions. The analysis of the facies succession suggested the absence of an appreciable influx of carbonate material to the basin from other sources. Based on the carbonate generation ability, one can distinguish three (carbonate-free, low-productive, and high-productive) groups of microbial communities. Groups 1 and 2 represent deep-water basin mats, whereas group 3 represents relatively shallow-water platformal microbial–mineral systems. The carbonate productivity of communities is inversely proportional to the depth of their dwelling and the relative rate of clayey sedimentation. The morphological reconstruction of microbiolite structures showed that the structures in basins and platforms greatly differed in terms of the size of elements. The ability of microbial communities to generate carbonate could be realized only within large ecosystems.

Anaerobic digestion of municipal solid waste in a nonmixed solids concentrating digestor

This paper reports on the performance and characteristics of a 4.5 m3 nonmixed, vertical flow Experimental anaerobic digestion Test Unit (ETU) treating refuse-derived fuel (RDF) and primary sludge. It was operated at 35°C and a loading rate of 3.2 kg VS/m3/d. Three tests involving chemical nutrients addition or effluent supernatant recycle were completed. Hydraulic retention times were 16, 18, and 19 d, respectively. Methane yields ranged from 0.24 to 0.28 m3/kg VS fed, which were 10–20% higher than that from a continuously-stirred tank reactor. Methane compositions were around 58%. Solids distribution, pH and volatile fatty acids (VFA) concentrations profiles, and the ability of microbial communities at various depths to utilize acetate and other VFAs were used to characterize the ETU.