Response Of Microbial Communities Research Articles

Short-term influences of flow alteration on microbial community structure and putative metabolic functions in gravel bar hyporheic zones

Microbial communities in the hyporheic zone are important for self-purification as the riverbed is metabolically active and responsible for the retention, storage, and mineralisation of organic matter transported in the surface water. Studies exploring the response of the hyporheic microbial community to flow regime alterations remain scarce. Here, we characterised the microbial community structure over downwelling, upwelling and intermediate hyporheic zone areas within and among gravel bars at high and low discharge levels to determine flow-induced changes in a dam-regulated river using 16S rRNA gene sequencing. At low discharge, microbial composition varied across the different areas of gravel bars, reflecting heterogeneity in local abiotic conditions. However, high discharge lead to microbial community homogenisation across the three areas of the gravel bars. Microbial communities across adjacent gravel bars remained dissimilar regardless of discharge levels, likely reflecting differences in bar morphology. Our results can help better understand how anthropogenic changes in hydrologic conditions can affect microbial diversity and function in the hyporheic zone. This knowledge will help us to understand better how changes in hydrological conditions affect ecosystem functions and services in rivers affected by human impacts.

Comparing the response of the indigenous microbial community to crude oil amendment in oxic versus hypoxic conditions

IntroductionThe Caspian Sea is the world’s largest landlocked saline lake which lies between Europe and Asia. This region is particularly known for its large-scale oil reserves, pipelines, and drilling activities, which have contributed to the environmental decline of this lake. In addition to pollution from the petroleum industry, drainage from various river basins brings an influx of residential, industrial, and agricultural effluents that induce eutrophication and hypoxic conditions in deeper, colder waters, creating an oxygen gradient. The temperature and oxygen stratification in this environment has presented a unique opportunity to investigate the potential of the biodegradative processes carried out by the indigenous microbial community. We believe these indigenous microbes possess different metabolic capabilities to degrade oil as they adapted to declining oxygen concentrations and temperatures with increasing depths over a prolonged period. Hence, community structure and composition will vary with depth.MethodsMicrocosms were set up to observe the indigenous microbial reaction after a 60 ppm native crude oil amendment over 115 days. Surface water microcosms were incubated at 28ºC and aerated while deep water microcosms were incubated at 8ºC under anaerobic conditions. These two environmental conditions represent the temperature and oxygen extremes along the gradient and were selected as we try to simulate the indigenous community’s response to this oil contamination. DNA was extracted and amplified from these microcosms and sequenced. Bioinformatic analysis was performed to track changes in the abundance of taxa present and biodiversity over different time points to show the progression of community structure.ResultsAll microcosms showed the presence of hydrocarbon-degrading phyla, whose presence is consistent with other reports from oil-enriched environments. However, distinct communities were observed in oxic versus hypoxic microcosms.ConclusionOrders of Bacteria related to sulfate and nitrogen cycling were found in hypoxic microcosms, indicating a possible mechanism for the anaerobic biodegradation of crude oil. GC-MS analysis of initial and final microcosms also provided evidence of degradation of hydrocarbon fractions in both warm, oxic and cold, hypoxic conditions.

Response of growth performance and cecum microbial community to cyclic heat stress in broilers.

Heat stress (HS) can affect growth performance through alterations in specific gut microbiota, which greatly threatens poultry production. How HS affects the mechanisms of microbial changes in the poultry cecum and the complex interactions between cecal microbial changes and growth performance have not yet been well evaluated. This study was conducted to examine the changes in growth performance and cecal microbiotal community in cyclic heat stress (CHS)-treated broilers. A total of 200 twenty-eight-day-old female Arbor Acres (AA) broilers were equally allotted into neutral ambient temperature group (TN group, 24 ± 1°C, 24 h/day) and CHS group (33 ± 1°C, 8 h/day) with five replicates of 10 broilers each, respectively. Growth performance, cecum microbial diversity, flora composition, and community structure were analyzed on days 35 and 42. The decreased average daily feed intake (ADFI), average daily gain (ADG), and the increased feed/gain ratio (F:G) were observed in heat-stressed broilers on days 35 and 42. The alpha and beta diversity index had no significant changes at the two experimental periods (P > 0.05). At the genus level, CHS significantly increased the relative abundance of Enterococcus at 42 days (P < 0.05). Based on the analysis of linear effect size feature selection, CHS made an enriched Reyranella and a reduced Romboutsia and Ruminiclostridium at 35 days of age (P < 0.05). CHS made an enriched Weissella and Enterococcus at 42 days of age (P < 0.05). The present study revealed that CHS reduces broiler growth performance and alters the microbial community of the cecum microbiota and the abundance of species. These findings are of critical importance to alleviate the negative effects of CHS on broiler chickens' growth performance by maintaining gut microbial balance.

A study on microbial mechanism in response to different nano-plastics concentrations in constructed wetland and its carbon footprints analysis

The increasing accumulation of environmental nano-plastics (NPs) poses significant environmental risk. While constructed wetlands (CWs) have proven effective in treating NPs, and most research efforts primarily emphasize on denitrification capacities. However, there are still knowledge gaps concerning the carbon footprints characteristics within CWs as well as the response mechanisms of microbial communities to perturbations caused by NPs. To evaluate these effects, a 360-day CWs microcosm experiment was conducted with nano-plastic treatments of 0 μg/L, 1 μg/L, 10 μg/L, and 100 μg/L. Results showed that COD removal efficiencies were 28.42 % for the CK, decreasing significantly to 11.92 % at 100 μg/L concentrations. TN removal efficiencies for the 1 μg/L, 10 μg/L, and 100 μg/L treatments showed average reductions of 8.65 %, 11.05 % and 13.47 %, respectively, in comparison to the control, which had a mean TN removal efficiency of 22.82 %. Simultaneously, the concentration of NPs had a direct impact on greenhouse gas (GHG) emissions from CWs, which increased from 5326.60 CO2-eq/m3·y to 30109.47 g CO2-eq/m3·y as NP concentration increased, and the contribution of microorganisms to CWs decreased from 23.28 % to 19.56 %. These phenomena could be attributed to the following reasons: as NPs concentration increased, the abundance of genes associated with nitrogen and methanogenesis metabolism (amo and cdh) decreased, resulting in a decline in COD and TN removal rates. Concurrently, the genes abundance related to methane formation (mtr and mcr) increased, leading to higher emissions of methane gas as a result of the consumption of accumulated CH-H4MPT and CH2-H4MPT intracellularly. Through this research, we gain fresh insights into sustained structural and functional adaptations of indigenous microbial communities in response to NPs. These findings serve as a theoretical foundation for future engineering enhancement of CWs geared towards more effective NPs treatment.

Soil bacterial and fungal communities resilience to long-term nitrogen addition in subtropical forests in China

Atmospheric nitrogen (N) deposition is predicted to increase, especially in the subtropics. However, the responses of soil microorganisms to long-term N addition at the molecular level in N-rich subtropical forests have not been clarified. A long-term nutrient addition experiment was conducted in a subtropical evergreen old-growth forest in China. The four treatments were: control, low N (50 kg N ha−1 a−1), high N (100 kg N ha−1 a−1), and combined N and phosphorus (P) (100 kg N ha−1 a−1 + 50 kg P ha−1 a−1). Metagenomic sequencing characterized diversity and composition of soil microbial communities and used to construct bacterial/fungal co-occurrence networks. Nutrient-treated soils were more acidic and had higher levels of dissolved organic carbon than controls. There were no significant differences in microbial diversity and community composition across treatments. The addition of nutrients increased the abundance of copiotrophic bacteria and potentially beneficial microorganisms (e.g., Gemmatimonadetes, Chaetomium, and Aureobasidium). Low N addition increased microbiome network connectivity. Three rare fungi were identified as module hubs under nutrient addition, indicating that low abundance fungi were more sensitive to increased nutrients. The results indicate that the overall composition of microbial communities was stable but not static to long-term N addition. Our findings provide new insights that can aid predictions of the response of soil microbial communities to long-term N addition.

Structure and function of microbiomes in the rhizosphere and endosphere response to temperature and precipitation variation in Inner Mongolia steppes.

Owing to challenges in the study of complex rhizosphere and endophytic microbial communities, the composition and function of such microbial communities in steppe ecosystems remain elusive. Here, we studied the microbial communities of the rhizosphere and endophytic microbes of the dominant plant species across the Inner Mongolian steppes using metagenomic sequencing and investigated their relationships with changes in mean annual temperature (MAT) and mean annual precipitation (MAP). Metagenomic sequencing based on Illumina high-throughput sequencing, using the paired end method to construct a small fragment library for sequencing. Adaptation of root systems to the environment affected the composition and function of rhizosphere and endophytic microbial communities. However, these communities exhibited distinct community assembly and environmental adaptation patterns. Both rhizosphere and endophytic microbial communities can be divided into two unrelated systems based on their ecological niches. The composition and function of the rhizosphere microbial communities were mainly influenced by MAT, while those of the endophytic microbial communities were mainly influenced by MAP. MAT affected the growth, reproduction, and lipid decomposition of rhizosphere microorganisms, whereas MAP affected reverse transcription and cell wall/membrane/envelope biogenic functions of endophytic microorganisms. Our findings reveal the composition and function of the rhizosphere and endophytic microbial communities in response to changes in MAP and MAT, which has important implications for future biogeography and climate change research.

Seasonal dynamics response mechanism of benthic microbial community to artificial reef habitats

Artificial reefs (ARs) have been globally deployed to enhance and restore coastal resource and ecosystems. Microorganisms play an essential role in marine ecosystems, while the knowledge regarding the impact of ARs on microecology is still limited, particularly data concerning the response of benthic microbial community to AR habitats. In this study, the seasonal dynamics of benthic microbial community in AR and adjacent non-artificial reef (NAR) areas surrounding Xiaoshi Island were investigated with high-throughput sequencing technology. The results revealed that the diversity and structure of microbial community between AR and NAR both displayed pronounced seasonal dynamics. There was a greater influence of season factors on microbial communities than that of habitat type. The microbial communities in AR and NAR habitats were characterized by a limited number of abundant taxa (ranging from 5 to 12 ASVs) with high relative abundance (8.35–25.53%) and numerous rare taxa (from 5994 to 12412 ASVs) with low relative abundance (11.91%–24.91%). Proteobacteria, Bacteroidota and Desulfobacterota were the common predominant phyla, with the relative abundances ranging from 50.94% to 76.76%. A total of 52 biomarkers were discovered, with 15, 4, 6, and 27 biomarkers identified in spring, summer, autumn and winter, respectively. Co-occurrence network analysis indicated that AR displayed a more complex interaction pattern and higher susceptibility to external disturbances. Furthermore, the neutral model and βNTI analyses revealed that the assembly of microbial communities in both AR and NAR is significantly influenced by stochastic processes. This study could provide valuable insights into the impact of ARs construction on the benthic ecosystems and would greatly facilitate the development and implementation of the future AR projects.

Dynamic Response of the cbbL Carbon Sequestration Microbial Community to Wetland Type in Qinghai Lake.

The soil carbon storage in the Qinghai-Tibet Plateau wetlands is affected by microbiota and wetland types, but the response mechanisms of carbon sequestration microorganisms on the Qinghai-Tibet Plateau to different wetland types are still poorly described. To explore the differences in carbon sequestration microbial communities in different wetlands and the main influencing factors, this study took a marsh wetland, river source wetland and lakeside wetland of Qinghai Lake as the research objects and used high-throughput sequencing to study the functional gene, cbbL, of carbon sequestration microorganisms. The results showed that the dominant bacterial group of carbon sequestration microorganisms in marsh and river source wetlands was Proteobacteria, and the dominant bacterial group in the lakeside wetland was Cyanobacteria. The alpha diversity, relative abundance of Proteobacteria and total carbon content were the highest in the marsh wetland, followed by the river source wetland, and they were the lowest in the lakeside wetland. In addition, the physical and chemical characteristics of the three wetland types were significantly different, and the soil temperature and moisture and total carbon content were the most important factors affecting the community structures of carbon-sequestering microorganisms. There was little difference in the total nitrogen contents between the marsh wetland and river source wetland. However, the total nitrogen content was also an important factor affecting the diversity of the carbon sequestration microbial community. In summary, the wetland type significantly affects the process of soil carbon sequestration. Compared with the riverhead and lakeside wetlands, the marsh wetland has the highest carbon storage.

Response of the soil microbial communities to forest ground cover manipulation in a boreal forest

In eastern Canada, boreal forests are locally experiencing a shift between two alternative stable states, productive closed-canopy feather moss (Pleurozium schreberi (Brid.) Mitt.) forests to low-productivity open lichen (Cladonia spp.) woodlands. While this shift has important consequences for ecosystem structure and productivity, little is known about the changes occurring in the diversity and composition of the soil microbial community which may be driven by this process. We evaluated the effects of 10-year moss transplantation on soil microbial communities in an open-lichen woodland. Treatments included: 1) removal of the lichen cover, 2) removal of the lichen cover followed by transplantation of a feather moss cover, 3) a control with the lichen cover kept in place (lichen control), and 4) a natural forest site with a feather moss cover (moss control). We found that changing the forest ground cover has a significant impact on the diversity, composition and function of soil microbial communities. Fungal alpha diversity was more sensitive to changes in lichen and moss cover, compared to bacterial diversity. Soil microbial community composition showed significant differences among all forest ground covers, but with greater similarities between the moss transplantation and control moss treatments. More importantly, changes of forest ground cover significantly affected the structure of microbial communities and fungal functional groups. Moss transplantation significantly increased the relative abundance of the organic nitrogen-scavenging fungal genus, Piloderma. Furthermore, moss transplantation significantly increased the overall relative abundance of ectomycorrhizal fungi and decreased the proportion of ericoid mycorrhizal fungi. Soil moisture and temperature were the main environmental variables associated to the shift in microbial community composition. Our study points out that moss transplantation in open-canopy lichen woodlands contributes to regulate and modify the composition, structure, and function of the soil microbial communities with potential implications for explaining the changes in ecosystem processes associated with these two forest ecosystems.

Microbial regulation of aggregate stability and carbon sequestration under long-term conservation tillage and nitrogen application

The stability of aggregates plays a significant role in soil organic carbon (SOC) sequestration in conservation agriculture soils. However, the regulation of microorganisms within aggregates on aggregate stability and SOC sequestration remains elusive. By dividing the soil into three aggregate size classes [mega-aggregates (>2000 μm), macro-aggregates (250–2000 μm), and micro-aggregates (<250 μm)], we evaluated the response of aggregate stability, SOC and microbial communities within aggregates to long-term conservation tillage, which consisted of two tillage methods (conventional tillage and no-tillage) and three nitrogen application rates (105, 180, and 210 kg N ha−1). Under no-tillage treatment, high nitrogen application rate increased SOC by 2.1–3.7 g·kg−1 within mega- and macro-aggregates but reduced the total amount of phospholipid fatty acids (PLFAs) within all aggregates. Under conventional tillage, high N application rate increased mean weight diameter (MWD) and reduced total PLFAs within all aggregates only in 0–10 cm. With the same nitrogen application rate, no-tillage increased MWD by 8.7 %–42.7 %, SOC content within mega-aggregates by 7.3 %–27.8 % and within macro-aggregates by 13.2 %–28.3 % when compared with conventional tillage. Actinobacteria were recruited by straw under no-tillage and their biomass increased 1.5–7.8 times in all aggregates compared with conventional tillage, where they might participate in aggregate formation via degradation of straw and increasing SOC within mega- and macro-aggregates. Conversely, desulfovibrio biomass within all aggregates was diminished under no-tillage compared with conventional tillage, while desulfovibrio possibly directly inhibited soil aggregate formation and decreased SOC within mega- and macro-aggregates under conventional tillage. Moreover, under no-tillage, arbuscular mycorrhizal fungi biomass increased by 0.4–1.6 nmol g−1 within all aggregates compared with conventional tillage in 0–10 cm, potentially indirectly contributing to soil aggregate formation via co-metabolic processes and increasing SOC within mega- and macro-aggregates. Overall, high nitrogen application under long-term no-tillage protects SOC within mega-aggregates by altering aggregate formation through the microbial communities, providing information that may be useful in developing management strategies to enhance carbon sequestration in agricultural soils.

Klebsiella pneumoniae in the intestines of Musca domestica larvae can assist the host in antagonizing the poisoning of the heavy metal copper

BackgroundMusca domestica larvae are common saprophytes in nature, promoting the material—energy cycle in the environment. However, heavy metal pollution in the environment negatively affects their function in material circulation. Our previous research found that some intestinal bacteria play an important role in the development of housefly, but the responses of microbial community to heavy metal stresses in Musca domestica is less studied.ResultsIn this study, CuSO4, CuSO4—Klebsiella pneumoniae mixture and CuSO4—K. pneumoniae phage mixture were added to the larval diet to analyze whether K. pneumoniae can protect housefly larvae against Cu2+ injury. Our results showed that larval development was inhibited when were fed with CuSO4, the bacterial abundance of Providencia in the intestine of larvae increased. However, the inhibition effects of CuSO4 was relieved when K. pneumoniae mixed and added in larval diets, the abundance of Providencia decreased. Electron microscope results revealed that K. pneumoniae showed an obvious adsorption effect on copper ion in vitro.ConclusionsBased on the results we assume that K. pneumoniae could adsorb Cu2+, reduce Cu2+ impact on gut community structure. Our study explains the role of K. pneumoniae antagonizing Cu2+, which could be applied as a probiotic to saprophytic bioantagonistic metal contamination.

Assessing the Influence of HGT on the Evolution of Stress Responses in Microbial Communities from Shark Bay, Western Australia.

Pustular microbial mats in Shark Bay, Western Australia, are modern analogs of microbial systems that colonized peritidal environments before the evolution of complex life. To understand how these microbial communities evolved to grow and metabolize in the presence of various environmental stresses, the horizontal gene transfer (HGT) detection tool, MetaCHIP, was used to identify the horizontal transfer of genes related to stress response in 83 metagenome-assembled genomes from a Shark Bay pustular mat. Subsequently, maximum-likelihood phylogenies were constructed using these genes and their most closely related homologs from other environments in order to determine the likelihood of these HGT events occurring within the pustular mat. Phylogenies of several stress-related genes-including those involved in response to osmotic stress, oxidative stress and arsenic toxicity-indicate a potentially long history of HGT events and are consistent with these transfers occurring outside of modern pustular mats. The phylogeny of a particular osmoprotectant transport gene reveals relatively recent adaptations and suggests interactions between Planctomycetota and Myxococcota within these pustular mats. Overall, HGT phylogenies support a potentially broad distribution in the relative timing of the HGT events of stress-related genes and demonstrate ongoing microbial adaptations and evolution in these pustular mat communities.

Bacillus velezensis WB invokes soil suppression of Fusarium oxysporum f. sp. niveum by inducing particular taxa

Fusarium wilt of watermelon caused by Fusarium oxysporum f. sp. niveum (Fon) results in a substantial economic losses in agriculture. Biological control agents (BCAs) help in controlling the infection of Fon. However, it remains unclear whether the application of BCAs can invoke soil suppression by inducing specific microbial groups concerned with disease suppression to synergistically resist fungal pathogens. The objective of this project was to determine the microbial mechanisms involved in disease suppression by BCAs. Here, we conducted pot experiments to explore Fusarium wilt in watermelon and soil microbial communities in response to different treatments. We found that the application of Bacillus velezensis WB enhanced disease suppression in nonsterilized soil. We further found that disease suppression in the WF treatment was connected to influence on the resident soil microbial communities, explicitly by causing an increase in Hyphomicrobiaceae and Chitinophagaceae. Pathogen suppression by the above two families was further studied in laboratory and pot experiments. The results showed that a synthetic community consisting of specific bacterial taxa effectively decreased the incidence of Fusarium wilt. B. velezensis WB introduction impacts the resident soil microbiome and invokes soil suppression by inducing resident microbes. Our results should help in designing synthetic microbial communities to improve soil function.

Microbial community and chemical composition of cigar tobacco (Nicotiana tabacum L.) leaves altered by tobacco wildfire disease.

Tobacco wildfire disease caused by Pseudomonas syringae pv. tabaci is one of the most destructive foliar bacterial diseases occurring worldwide. However, the effect of wildfire disease on cigar tobacco leaves has not been clarified in detail. In this study, the differences in microbiota and chemical factors between wildfire disease-infected leaves and healthy leaves were characterized using high-throughput Illumina sequencing and a continuous-flow analytical system, respectively. The results demonstrated significant alterations in the structure of the phyllosphere microbial community in response to wildfire disease, and the infection of P. syringae pv. tabaci led to a decrease in bacterial richness and diversity. Furthermore, the content of nicotine, protein, total nitrogen, and Cl- in diseased leaves significantly increased by 47.86%, 17.46%, 20.08%, and 72.77% in comparison to healthy leaves, while the levels of total sugar and reducing sugar decreased by 59.59% and 70.0%, respectively. Notably, the wildfire disease had little effect on the content of starch and K+. Redundancy analysis revealed that Pseudomonas, Staphylococcus, Cladosporium, and Wallemia displayed positive correlations with nicotine, protein, total nitrogen, Cl- and K+ contents, while Pantoea, Erwinia, Sphingomonas, Terrisporobacter, Aspergillus, Alternaria, Sampaiozyma, and Didymella displayed positive correlations with total sugar and reducing sugar contents. Brevibacterium, Brachybacterium, and Janibacter were found to be enriched in diseased leaves, suggesting their potential role in disease suppression. Co-occurrence network analysis indicated that positive correlations were prevalent in microbial networks, and the bacterial network of healthy tobacco leaves exhibited greater complexity compared to diseased tobacco leaves. This study revealed the impact of wildfire disease on the microbial community and chemical compositions of tobacco leaves and provides new insights for the biological control of tobacco wildfire disease.

Using Brassica Cover Crops as Living Mulch in a Vineyard, Changes over One Growing Season

Farmers hoping to manage cropping systems sustainably are turning to cover crops to help mitigate plant pathogens. Plants with biofumigant properties are used to control soil-borne pathogens in agricultural settings, especially in till systems, where the brassicas are incorporated into the soil as green manure or seed meal. The effect of these crops is not well studied in no-till systems; thus, it is hard to know if they are as effective as green manure. Whether or not these cover crops can effect changes during a single growth season has not yet been studied. This study compared the response of the soil microbial community to four different brassica cover crops, two of which are commonly used in vineyards (Sinapis alba L. (white mustard) and Raphanus sativus (L.) Domin (tillage radish)) as well as two brassicas that are native or naturalized to the Okanagan (Capsella bursa-pastoris (L.) Medik. (Shepherd’s purse) and Boechera holboelli (Hornem.) Á. Löve and D. Löve (Holbøll’s rockcress)). Cover crops did not affect fungal species richness, but B. holboelli recover crops were associated with increased evenness among fungal taxa. Both C. bursa-pastoris and S. alba had lower levels of plant parasitic nematodes compared to non-brassica controls. These results were apparent only after a single growing season, which indicates growers could use this approach as needed, minimizing long-term exposure to biofumigants for beneficial soil microbes.

Maize-soybean intercropping improved maize growth traits by increasing soil nutrients and reducing plant pathogen abundance

IntroductionMaize (Zea mays L.)–soybean (Glycine max L.) intercropping has been widely utilized in agricultural production due to its effectiveness in improving crop yield and nutrient use efficiency. However, the responses of maize rhizosphere microbial communities and the plant pathogen relative abundance to maize growth traits in maize-soybean intercropping systems with different chemical nitrogen fertilizer application rates remain unclear.MethodsIn this study, a field experiment was conducted, and the bacterial and fungal communities of maize rhizosphere soils in maize-soybean intercropping systems treated with different N fertilization rates were investigated using Illumina NovaSeq sequencing. Maize growth traits, soil physicochemical properties and soil enzyme activities were also examined.Results and discussion:We found that intercropping and N fertilizer treatments strongly influenced soil microbial diversity, structure and function. The PLSPM (partial least squares path modeling) confirmed that soil nutrients directly positively affected maize biomass and that intercropping practices indirectly positively affected maize biomass via soil nutrients, especially NH4+-N. Intercropping agronomic approaches also improved maize growth traits by reducing the plant pathogen abundance, and the relative abundance of the plant pathogen Trichothecium roseum significantly decreased with intercropping treatments compared to monocropping treatments. These results confirmed the benefits of maize-soybean intercropping treatments for agricultural production.

Response of surface soil microbial communities to heavy metals and soil properties for five different land-use types of Yellow River Delta

Response of surface soil microbial communities to heavy metals and soil properties for five different land-use types of Yellow River Delta

Simultaneous biogas upgrading and medium-chain fatty acids production using a dual membrane biofilm reactor

Utilizing H2-assisted ex-situ biogas upgrading and acetate recovery holds great promise for achieving high value utilization of biogas. However, it faces a significant challenge due to acetate's high solubility and limited economic value. To address this challenge, we propose an innovative strategy for simultaneous upgrading of biogas and the production of medium-chain fatty acids (MCFAs). A series of batch tests evaluated the strategy's efficiency under varying initial gas ratios (v/v) of H2, CH4, CO2, along with varying ethanol concentrations. The results identified the optimal conditions as initial gas ratios of 3H2:3CH4:2CO2 and an ethanol concentration of 241.2 mmol L−1, leading to maximum CH4 purity (97.2 %), MCFAs yield (54.2 ± 2.1 mmol L−1), and MCFAs carbon-flow distribution (62.3 %). Additionally, an analysis of the microbial community's response to varying conditions highlighted the crucial roles played by microorganisms such as Clostridium, Proteiniphilum, Sporanaerobacter, and Bacteroides in synergistically assimilating H2 and CO2 for MCFAs production. Furthermore, a 160-day continuous operation using a dual-membrane aerated biofilm reactor (dMBfR) was conducted. Remarkable achievements were made at a hydraulic retention time of 2 days, including an upgraded CH4 content of 96.4 ± 0.3 %, ethanol utilization ratio (URethanol) of 95.7 %, MCFAs production rate of 28.8 ± 0.3 mmol L−1 d−1, and MCFAs carbon-flow distribution of 70 ± 0.8 %. This enhancement is proved to be an efficient in biogas upgrading and MCFAs production. These results lay the foundation for maximizing the value of biogas, reducing CO2 emissions, and providing valuable insights into resource recovery.

Soil Microbial Community in Relation to Soil Organic Carbon and Labile Soil Organic Carbon Fractions under Detritus Treatments in a Subtropical Karst Region during the Rainy and Dry Seasons

Climate and detritus influence soil organic carbon (SOC) and labile SOC fractions by affecting soil microbial communities. However, it is not clear how, or to what extent, different detritus treatments affect soil microbial communities and SOC content in karst landscapes during different seasons. Plots in a karst landscape were treated with different detritus input regimes (control, no litter, no roots, no litter or roots, and double litter), and samples were collected during the dry and rainy seasons. We used Illumina sequencing of 16S rRNA to examine shifts in the diversity and composition of the associated soil microbial communities. Additionally, labile SOC fractions, including dissolved organic carbon (DOC) and microbial biomass carbon (MBC), along with soil physicochemical properties and C-degrading enzyme activities, were analyzed. The results revealed that the responses of soil properties and labile SOC fractions to detritus treatments were more pronounced during the rainy season than during the dry season, which mainly reflected that the levels of available potassium (AK), DOC, and MBC were significantly increased during the rainy season. Moreover, SOC and total nitrogen (TN) demonstrated significant changes with the double litter (DL) treatment during the rainy season. The responses of soil microbial communities to detritus treatments varied with the season, as reflected primarily in changes in the relative abundance of Ascomycota, unclassified_K_fungi, Proteobacteria, and Actinobacteriota. Climate, detritus treatments, and their interactions had significant effects on the species richness of soil bacterial communities, but did not influence fungal community diversity. Furthermore, structural equation modeling (SEM) revealed that the soil bacterial composition had the largest total effects on SOC, DOC, and MBC. In addition to directly influencing SOC, DOC, and MBC, soil properties (TN, AK, and pH) indirectly affected SOC, DOC, and MBC by altering C-degrading enzyme activity and the microbial community. We conclude that detritus treatments affect the soil microbial community and labile carbon fractions during both the rainy and dry seasons. Relationships among SOC, labile SOC fractions, enzyme activities, microbial communities, and function differed between seasons and among treatment types. This research advances our knowledge of how variation in detritus treatments affects biogeochemical cycling in karst soils during the rainy and dry seasons.

Integrated CO2 capture and conversion via H2-driven CO2 biomethanation: Cyclic performance and microbial community response

This study investigated the use of H2-driven CO2 biomethanation for integrated CO2 capture and conversion (iCCC). Anaerobic chambers containing Na2CO3-amended microbial growth medium provided with H2 were inoculated with anaerobic granular sludge. Microorganisms were enriched that could regenerate carbonate by using the bicarbonate formed from CO2 absorption to generate methane. Multiple absorption–regeneration cycles were performed and effective restoration of CO2 absorption capacity and stable carbonate recycling via CO2 biomethanation were observed for CO2 absorbents adjusted to three different pH values (9.0, 9.5, and 10.0). The pH = 10.0 group had the highest CO2 absorption capacity; 65.3 mmol/L in the 5th cycle. A slight alkaline inhibition of acetoclastic methanogenesis occurred near the end of regeneration, but had limited impact on the cyclic performance of the iCCC process. Microbial communities were dominated by H2-utilizing and alkali-tolerant species that could participate in CO2 biomethanation and survive under alternating neutral and alkaline conditions.