Microbial Carbon Use Efficiency Research Articles

Warming effects on grassland soil microbial communities are amplified in cool months.

Global warming modulates soil respiration (RS) via microbial decomposition, which is seasonally dependent. Yet, the magnitude and direction of this modulation remain unclear, partly owing to the lack of knowledge on how microorganisms respond to seasonal changes. Here, we investigated the temporal dynamics of soil microbial communities over 12 consecutive months under experimental warming in a tallgrass prairie ecosystem. The interplay between warming and time altered (p < 0.05) the taxonomic and functional compositions of microbial communities. During the cool months (January to February and October to December), warming induced a soil microbiome with a higher genomic potential for carbon decomposition, community-level ribosomal RNA operon (rrn) copy numbers, and microbial metabolic quotients, suggesting that warming stimulated fast-growing microorganisms that enhanced carbon decomposition. Modeling analyses further showed that warming reduced the temperature sensitivity of microbial carbon use efficiency (CUE) by 28.7% when monthly average temperature was low, resulting in lower microbial CUE and higher heterotrophic respiration (Rh) potentials. Structural equation modeling showed that warming modulated both Rh and RS directly by altering soil temperature and indirectly by influencing microbial community traits, soil moisture, nitrate content, soil pH, and gross primary productivity. The modulation of Rh by warming was more pronounced in cooler months compared to warmer ones. Together, our findings reveal distinct warming-induced effects on microbial functional traits in cool months, challenging the norm of soil sampling only in the peak growing season, and advancing our mechanistic understanding of the seasonal pattern of RS and Rh sensitivity to warming.

The size and diversity of microbes determine carbon use efficiency in soil.

Soil is home to a multitude of microorganisms from all three domains of life. These organisms and their interactions are crucial in driving the cycling of soil carbon. One key indicator of this process is Microbial Carbon Use Efficiency (CUE), which shows how microbes influence soil carbon storage through their biomass production. Although CUE varies among different microorganisms, there have been few studies that directly examine how biotic factors influence CUE. One such factor could be body size, which can impact microbial growth rates and interactions in soil, thereby influencing CUE. Despite this, evidence demonstrating a direct causal connection between microbial biodiversity and CUE is still scarce. To address these knowledge gaps, we conducted an experiment where we manipulated microbial body size and biodiversity through size-selective filtering. Our findings show that manipulating the structure of the microbial community can reduce CUE by approximately 65%. When we restricted the maximum body size of the microbial community, we observed a reduction in bacterial diversity and functional potential, which in turn lowered the community's CUE. Interestingly, when we included large body size micro-eukarya in the soil, it shifted the soil carbon cycling, increasing CUE by approximately 50% and the soil carbon to nitrogen ratio by about 25%. Our metrics of microbial diversity and community structure were able to explain 36%-50% of the variation in CUE. This highlights the importance of microbial traits, community structure and trophic interactions in mediating soil carbon cycling.

Enhanced rock weathering increased soil phosphorus availability and altered root phosphorus-acquisition strategies.

Enhanced rock weathering (ERW) has been proposed as a measure to enhance the carbon (C)-sequestration potential and fertility of soils. The effects of this practice on the soil phosphorus (P) pools and the general mechanisms affecting microbial P cycling, as well as plant P uptake are not well understood. Here, the impact of ERW on soil P availability and microbial P cycling functional groups and root P-acquisition traits were explored through a 2-year wollastonite field addition experiment in a tropical rubber plantation. The results show that ERW significantly increased soil microbial carbon-use efficiency and total P concentrations and indirectly increased soil P availability by enhancing organic P mobilization and mineralization of rhizosheath carboxylates and phosphatase, respectively. Also, ERW stimulated the activities of P-solubilizing (gcd, ppa and ppx) and mineralizing enzymes (phoADN and phnAPHLFXIM), thus contributing to the inorganic P solubilization and organic P mineralization. Accompanying the increase in soil P availability, the P-acquisition strategy of the rubber fine roots changed from do-it-yourself acquisition by roots to dependence on mycorrhizal collaboration and the release of root exudates. In addition, the direct effects of ERW on root P-acquisition traits (such as root diameter, specific root length, and mycorrhizal colonization rate) may also be related to changes in the pattern of belowground carbon investments in plants. Our study provides a new insight that ERW increases carbon-sequestration potential and P availability in tropical forests and profoundly affects belowground plant resource-use strategies.

Does microbial carbon use efficiency differ between particulate and mineral‐associated organic matter?

Abstract Microbial carbon use efficiency (CUE), a key parameter to characterize microbial carbon conversion efficiency, is assumed to be similar in soil models for different soil functional pools with varied organic matter composition and nutrient availability, that is, particulate organic matter (POM) and mineral‐associated organic matter (MAOM). However, empirical studies comparing microbial CUE in POM versus MAOM are largely lacking. It is not known whether microbial CUE variance may underpin the variant behaviour (i.e. turnover and composition) of different soil functional pools. Here we collected surface soils from 25 natural forests and grasslands with divergent edaphic properties, and compared microbial CUE in their POM versus MAOM using soil fractionation in combination with incubation using 18O‐labelled water. We also quantified edaphic properties, organic matter composition, microbial community structures and the stoichiometric imbalance of nitrogen (N) and phosphorus (P) relative to carbon based on the dissolved pool relative to microbial biomass (ImN and ImP) to investigate variables regulating microbial CUE and its variation in POM relative to MAOM (CUEPOM/CUEMAOM). In contrast to our expectation, microbial CUE did not consistently differ between POM and MAOM across sites, albeit with large inter‐sample variations in CUEPOM/CUEMAOM (from 0.3 to 4.4). Although MAOM had higher substrate quality, indicated by lower ratios of soil organic carbon to total nitrogen (C/NOM) and higher N‐compounds/aromatic ratios, and higher proportions of r‐strategists and fast‐growing bacteria in the microbial community than POM, POM and MAOM had similar degrees of N limitation (i.e. ImN), which was the best predictor of microbial CUE across all samples. Therefore, although MAOM harboured more N‐containing compounds than POM, N limitation was not necessarily lower, leading to an overall similar microbial CUE in POM and MAOM. Nevertheless, CUEPOM/CUEMAOM decreased with increasing P limitation in POM relative to MAOM. Overall, our paper presents a comprehensive, empirical study comparing microbial CUE in POM and MAOM of diverse soils, and our results support the use of similar microbial CUE for POM and MAOM in soil models, but also highlight potential contrasts in microbial CUE between soil pools under strong P limitation. Such inferences deserve attention under potentially increasing P limitation induced by N deposition. This study advances our mechanistic understanding of ecological patterns and processes from the organismic to the ecosystem scale based on soil microbial physiology and different soil functional pools. Read the free Plain Language Summary for this article on the Journal blog.

Soil pH and phosphorus availability regulate sulphur cycling in an 82-year-old fertilised grassland

The application of lime and mineral fertiliser is known to mitigate soil acidification and improve soil quality in improved grasslands. However, the long-term effect of simultaneous lime and fertiliser amendments on soil carbon (C) and sulphur (S) cycling is still poorly understood. To examine if soil pH or nutrient availability are the dominant factors regulating C and S cycling, we evaluated the biodegradation of methionine (organic S), gross S transformation, and microbial S utilisation using 35S and 14C dual-labelling. Soil samples (0–10 cm) were collected from one unfertilised control and five annual limed (Ca) treatments with or without nitrogen (N), phosphorus (P), potassium (K) and sulphur (S) fertilisers (Ca, CaN, CaNP, CaNPKCl, CaNPK2SO4) in an 82-year-old upland grassland experiment in Rengen, Germany. Long-term lime application increased soil pH values but significantly (p < 0.05) decreased soil organic C content. Fertilisation had no significant effect on microbial utilisation of 35S-labelled methionine, while microbial immobilisation of 35SO42− in the limed soils was significantly reduced compared to the control. This is attributed to either the increased soil pH or decreased C availability after liming. Microbial carbon use efficiency (CUE) was significantly higher in soils with applied P fertiliser (i.e., CaNP: 0.66 ± 0.02, CaNPKCl: 0.68 ± 0.02, CaNPK2SO4: 0.65 ± 0.01) compared to the CaN treatment (0.58 ± 0.01). Moreover, compared to CaN, CaNP and CaNPKCl treatments significantly increased gross S turnover, while no significant effects were observed in the CaNPK2SO4 treatment. Soil P deficits decreased microbial CUE and S bioavailability. Although P fertiliser addition alleviated microbial P limitation when N fertiliser was added, S fertiliser (CaNPK2SO4) present constrained S transformation rates. Overall, the importance of P availability for global S cycling in grasslands is shown, especially under N-enrichment conditions. However, the subsequent potential for C loss from long-term liming should be carefully considered in grassland management.

Beyond growth: The significance of non-growth anabolism for microbial carbon-use efficiency in the light of soil carbon stabilisation

Microbial carbon-use efficiency (CUE) in soils captures carbon (C) partitioning between anabolic biosynthesis of microbial metabolites and catabolic C emissions (i.e. respiratory C waste). The use of C for biosynthesis provides a potential for the accumulation of microbial metabolic residues in soil. Recognised as a crucial control in C cycling, microbial CUE is implemented in the majority of soil C models. Due to the models' high sensitivity to CUE, reliable soil C projections demand accurate CUE quantifications. Current measurements of CUE neglect microbial non-growth metabolites, such as extracellular polymeric substances (EPS) or exoenzymes, although they remain in soil and could be quantitatively important. Here, we highlight that disregarding non-growth anabolism can lead to severe underestimations of CUE. Based on two case studies, we demonstrate that neglecting exoenzyme and EPS production underestimates CUE by more than 100% and up to 30%, respectively. By incorporating these case-specific values in model simulations, we observed that the model projects up to 34% larger SOC stocks over a period of 64 years when non-growth metabolites are considered for estimating CUE, highlighting the crucial importance of accurate CUE quantification. Our considerations outlined here challenge the current ways how CUE is measured and we suggest improvements concerning the quantification of non-growth metabolites. Research efforts should focus on (i) advancing CUE estimations by capturing the multitude of microbial C uses, (ii) improving techniques to quantify non-growth metabolic products in soil, and (iii) providing an understanding of dynamic metabolic C uses under different environmental conditions and over time. In the light of current discussion on soil C stabilisation mechanisms, we call for efforts to open the ‘black box’ of microbial physiology in soil and to incorporate all quantitative important C uses in CUE measurements.

Divergent responses in microbial metabolic limitations and carbon use efficiency to variably sized polystyrene microplastics in soil

AbstractMicroplastics, considered emerging contaminants, have been accumulating excessively within soil ecosystems, conferring potentially detrimental effects with respect to soil carbon turnover and pools. As a major participant in soil carbon processes, microplastics affecting microorganisms may be one of the main agents affecting soil carbon dynamics. However, the microbial metabolism processes through which microplastics affect soil carbon dynamics remain unclear. Therefore, this study aimed to assess the impact of variously sized (1300, 800, 100, and 0.1 μm) polystyrene microplastics on soil microbial metabolism. Soil microplastics of all sizes invariably and consistently affected microbial metabolism, though nanomicroplastics (0.1 μm) stressed soil microorganisms more than micron‐microplastics. Furthermore, microplastics inhibited both microbial carbon use efficiency (CUE) and respiration, the exception being the CUE in the 1300 μm microplastics treatment. As microplastic particle size decreased, the suppressive influence of microplastics on microbial respiration was gradually lost, the inhibitory effect on microbial CUE increased steadily, and the impact on microorganisms shifted from extracellular to intracellular, with intracellular microplastics exhibiting higher toxicity than extracellular microplastics. We used stoichiometric models to provide precise projections of microbial metabolism features associated with microplastic contamination, thereby enhancing the understanding of the effects of microplastic contamination on the carbon cycle and soil ecosystem.

Soil nitrogen availability and microbial carbon use efficiency are dependent more on chemical fertilization than winter drought in a maize-soybean rotation system.

Soil nitrogen (N) availability is one of the limiting factors of crop productivity, and it is strongly influenced by global change and agricultural management practices. However, very few studies have assessed how the winter drought affected soil N availability during the subsequent growing season under chemical fertilization. We conducted a field investigation involving snow removal to simulate winter drought conditions in a Mollisol cropland in Northeast China as part of a 6-year fertilization experiment, and we examined soil physicochemical properties, microbial characteristics, and N availability. Our results demonstrated that chemical fertilization significantly increased soil ammonium and total N availability by 42.9 and 90.3%, respectively; a combined winter drought and fertilization treatment exhibited the highest soil N availability at the end of the growing season. As the growing season continued, the variation in soil N availability was explained more by fertilization than by winter drought. The Mantel test further indicated that soil Olsen-P content and microbial carbon use efficiency (CUE) were significantly related to soil ammonium availability. A microbial community structure explained the largest fraction of the variation in soil nitrate availability. Microbial CUE showed the strongest correlation with soil N availability, followed by soil available C:P and bacteria:fungi ratios under winter drought and chemical fertilization conditions. Overall, we clarified that, despite the weak effect of the winter drought on soil N availability, it cannot be ignored. Our study also identified the important role of soil microorganisms in soil N transformations, even in seasonally snow-covered northern croplands.

Active microbial population dynamics and life strategies drive the enhanced carbon use efficiency in high-organic matter soils.

Microbial carbon use efficiency (CUE) is a critical parameter that controls carbon storage in soil, but many uncertainties remain concerning adaptations of microbial communities to long-term fertilization that impact CUE. Based on H218O quantitative stable isotope probing coupled with metagenomic sequencing, we disentangled the roles of active microbial population dynamics and life strategies for CUE in soils after a long-term (35 years) mineral or organic fertilization. We found that the soils rich in organic matter supported high microbial CUE, indicating a more efficient microbial biomass formation and a greater carbon sequestration potential. Organic fertilizers supported active microbial communities characterized by high diversity and a relative increase in net growth rate, as well as an anabolic-biased carbon cycling, which likely explains the observed enhanced CUE. Overall, these results highlight the role of population dynamics and life strategies in understanding and predicting microbial CUE and sequestration in soil.IMPORTANCEMicrobial CUE is a major determinant of global soil organic carbon storage. Understanding the microbial processes underlying CUE can help to maintain soil sustainable productivity and mitigate climate change. Our findings indicated that active microbial communities, adapted to long-term organic fertilization, exhibited a relative increase in net growth rate and a preference for anabolic carbon cycling when compared to those subjected to chemical fertilization. These shifts in population dynamics and life strategies led the active microbes to allocate more carbon to biomass production rather than cellular respiration. Consequently, the more fertile soils may harbor a greater microbially mediated carbon sequestration potential. This finding is of great importance for manipulating microorganisms to increase soil C sequestration.

Role of an arbuscular mycorrhizal fungus in vegetation restoration as indicated by bacterial diversity and microbial metabolic limitation in soil underlying moss biocrusts

Arbuscular mycorrhizal (AM) fungi contribute to the revegetation of degraded ecosystems such as coal mining areas and may indirectly affect the development of biological soil crusts (biocrusts). However, bacterial diversity and microbial nutrient cycling in the soil underlying biocrusts are seldom considered when assessing ecological restoration effects. Bacterial community composition was quantified and compared using 16S rRNA gene sequencing, metabolic limitation of microbes via extracellular enzymatic stoichiometry and their association with carbon use efficiency (CUE) in soil underlying moss biocrusts in vegetated areas inoculated with an AM fungus or uninoculated and in uninoculated unvegetated areas. The AM fungal inoculum significantly influenced bacterial community composition and diversity, extracellular enzyme activities and CUE in soil underlying moss biocrusts mainly by affecting soil nutrients. Correlation analysis revealed that Actinobacteria, Armatimonadetes, Bacteroidetes, Chlorobi, Cyanobacteria, Saccharibacteria, and Verrucomicrobia were positively correlated with soil nutrients carbon (C), nitrogen (N) and phosphorus (P). A vector analysis of extracellular enzyme activity indicates that soil microbial communities underlying moss biocrusts were limited by P but microbial communities in areas inoculated with the AM fungus had the lowest relative P limitation. The alleviation of microbial P limitation increased the microbial CUE and bacterial phylum community and alpha diversity, leading to an increase in subsoil C content underlying moss biocrusts. This indicates that microbial communities in soil underlying moss biocrusts under in restoration areas containing the AM fungus were more stable under environmental stress, and the inclusion of AM fungal inoculation may be recommended as the preferred option for ecosystem restoration in arid and semi-arid coal mining areas.

Global prediction of soil microbial growth rates and carbon use efficiency based on the metabolic theory of ecology

Soil microbial growth rate and microbial carbon use efficiency (CUE) are critical parameters of soil microbial carbon metabolism, moderating soil organic carbon (SOC) dynamics. However, global patterns of soil microbial growth rate and microbial CUE are still unresolved. Here, we show that the metabolic theory of ecology (MTE) can be applied to model soil microbial growth rate at the global scale as a function of microbial biomass, temperature, and SOC contents. Rates of soil microbial growth were modeled at depths of 0–30 cm and calibrated against rates measured with the 18O-labeled H2O incubation method. The modeled soil microbial growth rates were strongly driven by temperature. They decreased with latitude and had greater seasonal variations in tundra and boreal forest compared to tropical biomes. Soil microbial CUE (0–30 cm) ranged from 0.25 to 0.63 among global biomes, averaging at 0.43. Modeled annual soil microbial growth rates followed the same global patterns and were on the same order of magnitude as other key ecosystem C fluxes such as net primary productivity, litterfall, and heterotrophic respiration. This indicates a strong functional linkage of aboveground and belowground communities at the global scale. Our MTE-based approach provides the first estimates of global patterns for soil microbial growth rate and microbial CUE and potentially provides a powerful mechanistic framework to incorporate soil microbes into Earth System Models.

Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming

Increasing soil organic carbon (SOC) in croplands by switching from conventional to conservation management may be hampered by stimulated microbial decomposition under warming. Here, we test the interactive effects of agricultural management and warming on SOC persistence and underlying microbial mechanisms in a decade-long controlled experiment on a wheat-maize cropping system. Warming increased SOC content and accelerated fungal community temporal turnover under conservation agriculture (no tillage, chopped crop residue), but not under conventional agriculture (annual tillage, crop residue removed). Microbial carbon use efficiency (CUE) and growth increased linearly over time, with stronger positive warming effects after 5 years under conservation agriculture. According to structural equation models, these increases arose from greater carbon inputs from the crops, which indirectly controlled microbial CUE via changes in fungal communities. As a result, fungal necromass increased from 28 to 53%, emerging as the strongest predictor of SOC content. Collectively, our results demonstrate how management and climatic factors can interact to alter microbial community composition, physiology and functions and, in turn, SOC formation and accrual in croplands.

Subsoil SOC increased by high C:N ratio straw application with optimized nitrogen supplementation

AbstractThe application of straw and nutrients to agricultural subsoils is of significant interest to enhance carbon (C) sequestration and soil fertility. However, little research has explored the effect straw application on microbial stoichiometry, soil organic carbon (SOC) mineralization and accumulation and their relationships, in subsoil. In order to address these knowledge gaps, we examined the soil characteristics (organic carbon mineralization, available nutrient contents and microbial stoichiometric ratio) under straw addition (maize leaf and stem) with and without nitrogen (N) supplementation (no addition, 30 mg N kg−1 dry soil−1, 60 mg N kg−1 dry soil−1) during an 80‐day incubation experiment. The microbial stoichiometric ratio imbalance (C:N and C:Phosphorus (P)) and extracellular enzyme stoichiometry were measured as indicators of the systematic relationship between soil resource availability and the mineralization of organic carbon. Our study demonstrated that the addition of straw significantly enhanced CO2 emissions and led to an increase in the C:N imbalance, while simultaneously decreasing microbial carbon use efficiency (CUE). In addition, stem addition showed 5.6% lower CUE, but 8.2% higher SOC compared with leaf addition. We also found that nitrogen addition to subsoil alleviated microbial nitrogen limitation. 60 mg N kg−1 dry soil rates of nitrogen application had a positive effect on reducing C:N imbalance and promoting the accumulation of SOC. Extracellular enzyme activity and microbial stoichiometric ratio were the most important controlling factors of SOC mineralization and microbial CUE, respectively. In conclusion, the application of straw alongside N to balance stoichiometric ratios can significantly increase SOC content, indicating the potential for carbon sequestration in agricultural subsoils.

Soil organic matter turnover: Global implications from δ13C and δ15N signatures

The turnover and residence time of carbon (C) and nitrogen (N) in soil is a fundamental parameter reflecting the rates of soil organic matter (SOM) transformation and the contribution of soils to greenhouse gases fluxes. Based on the global database of the stable isotope composition of C (δ13C) and N (δ15N) depending on soil depth (171 profiles), we assessed С and N turnover and related them to climate, biome types and soil properties. The 13C and 15N discrimination between the litter horizon and mineral soil was evaluated to explain the key processes of litter transformation. The 13C and 15N discrimination by microbial utilization of litter and SOM, as well as the continuous increase of δ13C and δ15N with depth, enabled to assess C and N turnover within SOM. N turnover was two times faster than that of C, which reflects i) repeated N recycling by microorganisms accelerating N turnover, ii) C loss as CO2 and input of new C atoms to cycling, which reduces the C turnover within soil, and iii) generally slower turnover of N free persistent organic compounds (e.g. lignin, suberin, cellulose) compared to the N containing compounds (e.g. amino acids, ribonucleic acids). An increase in temperature and precipitation accelerated C and N turnover because: i) higher microbial activity and SOM decomposition rate, ii) larger soil moisture and fast diffusion of dissolved organics towards exoenzymes, iii) downward transport of 13C-enriched organic matter (e.g. sugars, amino acids), and iii) leaching of 15N-depleted nitrates from the topsoil into subsoil and losses from the whole soil profile. Temperature accelerates SOM turnover stronger than precipitation. The temperature increase by 10 °C accelerates the C and N turnover for 40 %. SOM turnover is boosted by decreasing C/N ratio because: i) SOM with a high C/N ratio originated from litter is converted to microbially-derived SOM in mineral soil characterized by a low C/N ratio; ii) litter with a low C/N ratio is decomposed faster than litter with a high C/N; iii) microbial carbon-use efficiency increases with N availability. The biome type affects SOM decomposition by i) climate: slower turnover under wet and cold conditions, and ii) by litter quality: faster utilization of leaves than needles. Thus, the fastest C turnover is common under evergreen forests and the lowest under mixed and coniferous ones, whereas temperature and C/N ratio are the main factors controlling SOM turnover. Concluding, the assessment of SOM turnover by δ13C and δ15N approach showed two times faster N turnover compared to C, and specifics of SOM turnover depending on the biomes as well as climate conditions.

Microbial carbon use efficiency and soil organic carbon stocks across an elevational gradient in the Peruvian Andes

Soils of mountain ecosystems are one of the most vulnerable ecosystems to climate change, while the ecosystem services they produce are significant and currently at risk. High altitude soils contain high C stocks, but due to difficult access to sites these areas are understudied. Moreover, how the C and N cycling is changing in response to climate change in these ecosystems, is still unclear. Microbial carbon use efficiency (CUE) and its dependency on the environmental constraints along the altitudinal gradients is one important unknown factor. Here we present results from an altitudinal gradient study (3500 to 4500 m a.s.l.) from a Polylepis forest in the Peruvian Andes. We measured the soil organic carbon (SOC) stocks and microbial metabolic CUE by 13C glucose tracing and microbial resource use efficiency (CUEC:N) based on enzyme activity measurements. We expected to find an increase in SOC stock, microbial nutrient limitations, and lower CUE with elevation. SOC stocks depended on soil development and followed a unimodal curve that peaks at 4000 m in two of the three studied valleys. Neither 13CUE nor CUEC:N changed significantly with altitude. Soil C:N ratio, β-glucosidase, chitinase, and phosphatase enzyme activities increased with elevation, but peroxidase activity decreased with elevation. We suggest that more labile organic matter left at high elevation could compensate for the increasing nutrient limitation at high elevation, resulting in no noticeable change in CUE with elevation.

Effects of corn stalks returning on soil microbial carbon use efficiency and corn yield in semi-arid cropland

Soil microbial carbon use efficiency (CUE) is a key parameter controlling the short-term carbon (C) cycle in terrestrial ecosystems. The effect of urea application (156 kg N ha-1) and corn stalks returning (9.0 tons ha-1) on soil microbial CUE and corn yield in semi-arid cropland was studied using the 18O-labeled water approach during a one-year experiment. In semi-arid cropland, applying urea reduced soil microbial CUE by 44%, while the soil microbial CUE was increased significantly by 34% after returning corn stalks to the field. The application of urea increased the total nitrogen content of soil by 23%, and corn stalks returning further increased nitrate nitrogen (NO3–-N) by 45%, dissolved organic carbon (DOC) by 53%, and dissolved organic nitrogen (DON) by 122%. Compared with no fertilization, urea application increased the corn height by 4% and the corn yield by 21%. Corn stalks returning combined with urea reduced the corn stalks by 37% compared with no fertilizer. There was no significant difference in corn yield between corn stalks returning combined with urea and single urea application. Therefore, corn stalks returning combined with urea may be an effective agronomic measure to increase soil carbon sequestration, improve soil fertility, maintain corn yield, restore soil fertility, and improve production capacity.

Tree species diversity increases soil microbial carbon use efficiency in a subtropical forest.

Plant communities strongly influence soil microbial communities and, in turn, soil carbon (C) cycling. Microbial carbon use efficiency (CUE) is an important parameter for predicting soil C accumulation, yet how plant and soil microbial community traits influence microbial CUE remains poorly understood. Here, we determined how soil microbial CUE is influenced by plant and soil microbial community traits, by studying a natural gradient of plant species diversity in a subtropical forest. Our results showed that microbial CUE increased with increasing tree species diversity, suggesting a correlation between plant community traits and soil C storage. The specific soil properties that explained the greatest variation in microbial CUE were associated with microbial communities (biomass, enzyme activities and the ratio of oligotrophic to copiotrophic taxa); there were weaker correlations with plant-input properties, soil chemistry and soil organic C quality and its mineral protection. Overall, high microbial CUE was associated with soil properties correlated with increased tree species diversity: higher substrate availability (simple SOM chemical structures and weak mineral organic associations) and high microbial growth rates despite increased community dominance by oligotrophic strategists. Our results point to a mechanism by which increased tree species diversity may increase the forest C sink by affecting carbon use with the soil microbial community.

Multiple Factors Jointly Lead to the Lower Soil Microbial Carbon Use Efficiency of Abies fanjingshanensis in a Typical Subtropical Forest in Southwest China

Abies fanjingshanensis trees are the only remaining Abies species in a type of subtropical forest of southwest China and are in imminent danger. Previous studies suggested that the massive death of Abies was caused by the unbalanced chemometrics and nutrients in the soil. To the best of our knowledge, for the first time, we evaluated the microbial carbon use efficiency (CUE) in the rhizospheric topsoil and subsoil of A. fanjingshanensis, at high elevation, middle elevation, and low elevation as well as investigated their physicochemical indices, soil enzyme activities, bacteria, fungi, and microbial biomass. The results showed that the physicochemical parameters (TP, SOC, AK, AP, MC, TN, NO3-N, NH4-N and cation exchange capacity) of the topsoil were higher than those of the subsoil. Acidobacteria, Proteobacteria, Planctomycetes, and Actinobacteria were the dominant phyla in the two soil layers. Candidatus_Koribacter was the main indicator species in the rhizospheric topsoil and subsoil. The positive correlation in the bacterial co-occurrence networks implied that cooperation was dominant between the bacteria in four soil types, and the same phenomenon was found in the co-occurrence networks of fungi. A structural equation model confirmed that pH was the most important factor affecting microbial CUE in the topsoil and subsoil. We inferred that the microorganisms in the acidic soil environment were forced to consume more energy to maintain cellular pH, while less energy was used for growth. The increased solubility of some toxic metals in the acidic soil affected the microbes, resulting in a lower microbial CUE in the A. fanjingshanensis rhizospheric soil. Our results highlight that pH values in soil mainly affected microbial CUE, and a lower microbial CUE may be another important factor in the death of large numbers of A. fanjingshanensis. Several measures must be carried out to improve the microbial CUE in the rhizospheric soil of A. fanjingshanensis by the department of forest management, such as adding the appropriate biochar and nitrogenous fertilizer.

Whole-soil-profile warming does not change microbial carbon use efficiency in surface and deep soils

The paucity of investigations of carbon (C) dynamics through the soil profile with warming makes it challenging to evaluate the terrestrial C feedback to climate change. Soil microbes are important engines driving terrestrial biogeochemical cycles; their carbon use efficiency (CUE), defined as the proportion of metabolized organic C allocated to microbial biomass, is a key regulator controlling the fate of soil C. It has been theorized that microbial CUE should decline with warming; however, empirical evidence for this response is scarce, and data from deeper soils are particularly scarce. Here, based on soil samples from a whole-soil-profile warming experiment (0 to 1 m, +4 °C) and 18O tracing approach, we examined the vertical variation of microbial CUE and its response to ~3.3-y experimental warming in an alpine grassland on the Qinghai-Tibetan Plateau. Microbial CUE decreased with soil depth, a trend that was primarily controlled by soil C availability. However, warming had limited effects on microbial CUE regardless of soil depth. Similarly, warming had no significant effect on soil C availability, as characterized by extractable organic C, enzyme-based lignocellulose index, and lignin phenol-based ratios of vanillyls, syringyls, and cinnamyls. Collectively, our work suggests that short-term warming does not alter microbial CUE in either surface or deep soils, and emphasizes the regulatory role of soil C availability on microbial CUE.

Microbial carbon use efficiency in different ecosystems: A meta-analysis based on a biogeochemical equilibrium model.

Soil microbial carbon use efficiency (CUE) is a crucial parameter that can be used to evaluate the partitioning of soil carbon (C) between microbial growth and respiration. However, general patterns of microbial CUE among terrestrial ecosystems (e.g., farmland, grassland, and forest) remain controversial. To address this knowledge gap, data from 41 study sites (n = 197 soil samples) including 58 farmlands, 95 forests, and 44 grasslands were collected and analyzed to estimate microbial CUEs using a biogeochemical equilibrium model. We also evaluated the metabolic limitations of microbial growth using an enzyme vector model and the drivers of CUE across different ecosystems. The CUEs obtained from soils of farmland, forest, and grassland ecosystems were significantly different with means of 0.39, 0.33, and 0.42, respectively, illustrating that grassland soils exhibited higher microbial C sequestration potentials (p < .05). Microbial metabolic limitations were also distinct in these ecosystems, and carbon limitation was dominant exhibiting strong negative effects on CUE. Exoenzyme stoichiometry played a greater role in impacting CUE values than soil elemental stoichiometry within each ecosystem. Specifically, soil exoenzymatic ratios of C:phosphorus (P) acquisition activities (EEAC:P ) and the exoenzymatic ratio of C:nitrogen (N) acquisition activities (EEAC:N ) imparted strong negative effects on soil microbial CUE in grassland and forest ecosystems, respectively. But in farmland soils, EEAC:P exhibited greater positive effects, showing that resource constraints could regulate microbial resource allocation with discriminating patterns across terrestrial ecosystems. Furthermore, mean annual temperature (MAT) rather than mean annual precipitation (MAP) was a critical climate factor affecting CUE, and soil pH as a major factor remained positive to drive the changes in microbial CUE within ecosystems. This research illustrates a conceptual framework of microbial CUEs in terrestrial ecosystems and provides the theoretical evidence to improve soil microbial C sequestration capacity in response to global change.