Methylene Linker Research Articles

8018 Improving Anti-Breast Cancer Activities by Optimizing Torsion Angle Energies

Abstract Disclosure: D.R. Zak: None. E.C. Fink: None. G.R. Hancock: None. K.S. Young: None. S.W. Fanning: None. Overexpression of estrogen receptor alpha (ER-alpha) is found in 70% of breast cancer tumors. Normally, ER-alpha remains inactive and sequestered in the cytoplasm until estrogen binds to the ligand-binding domain (LBD) to enable nuclear translocation, coregulator recruitment, and subsequent activation of proliferative ER-alpha-dependent transcriptomic profiles. The majority of breast cancers are treated successfully with ER-targeted endocrine therapies, but hotspot ER-alpha LBD mutants are selected for, namely Y537S and D538G causing therapeutic resistance, relapse, and aggressive metastatic disease. The selective estrogen receptor modulator (SERM) lasofoxifene (laso) and selective estrogen receptor degrader (SERD) elacestrant (RAD1901) are chemically distinctive and show great promise in the ER-alpha mutant setting with potent anti-tumor effects and improved side effect profiles compared to the standard-of-care SERD fulvestrant (ICI). To elucidate the structural-transcriptional relationships of these ligands, we created a laso/RAD1901 chemical hybrid T6I-29 that demonstrated both canonical and unexpected therapeutic mechanisms of action. However, it possesses reduced anti-proliferative potency compared to ICI. We hypothesized that minor chemical changes to T6I-29 could improve potency while maintaining its favorable pharmaceutical profiles. To address this hypothesis, we performed quantum mechanical calculations of a series of T6I-derivatives. The addition of a methyl linker within the scaffold core significantly improved the torsion angle energies of the ligand binding pose. Multiple derivatives were synthesized based on these computations. The new compound T6I-B2 exerted profound anti-proliferative effects on breast cancer cells and adopted a unique ligand binding pose within the LBD. This approach shows that T6I-SERM potency can be improved by optimizing ligand torsion angle energies. Presentation: 6/3/2024

Potential MRSA inhibitory activity of some new benzofuran-pyrazolo[1,5-a]pyrimidine hybrids attached to arene units via methylene or azo linkage

MRSA, a resistant bacteria causing severe infections, is targeted by researchers developing new anti-resistance compounds. The study aimed to investigate the MRSA inhibitory activity of two series of benzofuran-pyrazolo[1,5-a]pyrimidines 1 and 2, attached to arene units via methylene or azo linkage, respectively. The desired products were prepared, in 82–92% yields, by reacting benzofuran-based enaminone 4 with the appropriate 1H-pyrazole-3,5-diamines 5 in pyridine at reflux for 5–6 h. The new hybrids showed a wide spectrum of antibacterial activity against different ATCC strains. Products with azo linkage and para-substituted arene units with electron-releasing groups demonstrated higher antibacterial activity. 3-((4-Methoxyphenyl)diazenyl)-linked pyrazolo[1,5-a]pyrimidine 2e demonstrates activity that exceeded the reference ciprofloxacin with MIC/MBC values of 1.8/3.6 µM against S. aureus and E. coli strains. Also, it demonstrated more effective MRSA inhibitory activity than the reference linezolid, with MIC/MBC values of 3.6/14.4 and 1.8/7.2 µM against MRSA ATCC:33591 and ATCC:43300 strains, respectively.

Synthesis, electrochemical properties, and antioxidant activity of sterically hindered catechols with 1,3,4-oxadiazole, 1,2,4-triazole, thiazole or pyridine fragments.

A series of new RS-, RS-CH2- and R2N-CH2-functionalized сatechols with heterocyclic fragments such as 1,3,4-oxadiazole, 1,2,4-triazole, thiazole, or pyridine were synthesized by the reaction of 3,5-di-tert-butyl-o-benzoquinone or 3,5-di-tert-butyl-6-methoxymethylcatechol with different heterocyclic thiols. The S-functionalized catechols were prepared by the Michael reaction from 3,5-di-tert-butyl-o-benzoquinone and the corresponding thiols. The starting reagents such as substituted 1,3,4-oxadiazole-2-thiols and 4H-triazole-3-thiols are characterized by thiol-thione tautomerism, therefore their reactions with 3,5-di-tert-butyl-6-methoxymethylcatechol can proceed at the sulfur or nitrogen atom. In the case of mercapto-derivatives of thiazole or pyridine, this process leads to the formation of the corresponding thioethers with a methylene linker. At the same time, thiolated 1,3,4-oxadiazole or 1,2,4-triazole undergo alkylation at the nitrogen atom in the reaction with 3,5-di-tert-butyl-6-methoxymethylcatechol to form the corresponding thiones. The yield of reaction products ranges from 42 to 80%. The crystal structures of catechols with 3-nitropyridine or 1,3,4-oxadiazole-2(3H)-thione moieties were established by single-crystal X-ray analysis. The possibility of forming intra- and intermolecular hydrogen bonds has been established for these compounds. The electrochemical behavior of the studied compounds is influenced by several factors: the nature of the heterocycle and its substituents, the presence of a sulfur atom in the catechol ring, or a thione group in the heterocyclic core. The radical scavenging activity and antioxidant properties were determined using the reaction with synthetic radicals, the cupric reducing antioxidant capacity assay, the inhibition process of superoxide radical anion formation by xanthine oxidase, and the process of lipid peroxidation of rat liver (Wistar) homogenates in vitro.

Crosslinking reactions of a model aminated lignin compound as a platform for building thermosetting polymers for lignin-based bio adhesives

As millions of tons of kraft lignin are being wasted, a potential application is to use its crosslinking reactions to build thermosetting bio adhesives. However, the crosslinking reactions between lignin molecules are not fully understood. The present study aims to elucidate the crosslinking reactions of the model lignin compound guaiacylglycerol-β-guaiacyl ether (GGE) via one-step hydroxymethylation/ amination with formaldehyde and diethylenetriamine (DETAM), or one-step glyoxylation/ amination with glyoxal and DETAM via liquid NMR techniques such as 1H NMR, 13C NMR, 2D 1H–13C, and 1H–15N HSQC NMR. Specifically, the 2D 1H–13C HSQC NMR spectra confirm the presence of –CH2–NH– with a chemical shift of 1H 2.6–3.6/13C 40–60 ppm, and the formation of methylene linkages via the crosslinking reaction. Also, the 2D 1H–15N HSQC NMR spectra clearly detect the formation of amide and imine bonds at 1H 7.8/15N 110 and 1H 8.07/15N 121.5 ppm from the crosslinked GGE.

Multiphase hydrogen bonding strategies room temperature self-healing, recyclable polyurethane elastomers for applications in flame retardant materials

Novel elastomers offer new opportunities to develop multifunctional materials in terms of combining mechanical strength, room-temperature self-healing properties and recyclability. However, self-healing polymers have high mechanical strength at high internal cross-linking density, but restrict the movement of molecular chain segments leading to reduced self-healing efficiency. The presence of microphase-separated structures makes the polymers poorly efficient for repair at room temperature. In this paper, a multiphase hydrogen bonding (H-bonding) strategy is used to introduce an aliphatic ring into the system to form a repeating unit with the hard segments, as well as a bis-benzene ring structure with a methylene linkage to disrupt the crystallization of the hard domains. Specifically, PUPI-M2I3 has a mechanical tensile strength of 17.93 MPa, an excellent tensile ratio of 1109.88 %, the sample can recover 95.93 % at room temperature after 24 h of fracture and stretching, with excellent room temperature self-healing performance and recyclability. Meanwhile, the self-healing flame-retardant material based on PUPI-M2I3 is developed by comprehensive consideration, which opens a new way for the research and development of flame-retardant materials.

Polynitropyrazole derivatives of pentanitroisowurtzitane

High energetic compounds of pentanitroisowurtzitane series containing various polynitropyrazolyl substituents attached to the frame through a methylene linker were synthesized in two steps from the corresponding NH precursors and paraformaldehyde. The structures of the compounds obtained were characterized by spectral methods, and their energy characteristics were estimated.

Changing the Linking Functionality in a Triblock Co-Polymer for Electrolyzer or Fuel Cell Membrane or Ionomer for Chemical Stability Improvements and Potentially Other Consequences.

We have developed a versatile scalable triblock polymer system for anion exchange membrane (AEM) based electrochemical energy conversion devices. This system is uniquely suited to solving both the membrane and ionomer challenges for the commercialization of AEM water electrolysis or fuel cells. Using our advanced fundamental understanding of AEMs based on our work which began in 2010, we can design systems from first principles to match the needs of the device. A triblock ABA polymer is readily fabricated that has both chemical and mechanical stability. The synthesis of these systems is robust, high yield and amenable to high volume production. It utilizes a novel dual chain transfer agent to mediate the chain-transfer ring-opening metathesis polymerization (ROMP) of cyclooctene (COE) or the polymerization of isoprene (IP) to give the hydrophobic B block of the polymer. This is followed by the reversible addition-fragmentation chain transfer radial polymerization of chloromethylstyrene (CMS). The polyCMS (pCMS) blocks are then quaternized with an amine to give the cationic hydrophilic A block. Before quaternization the B block is hydrogenated to give either semi-crystalline polyethylene (pE) or amorphous polymethylbutylene (pMB) from pCOE and pIP respectively. The obvious achilles heal in this system from a chemical durability standpoint is the linking ether functionality between the hydrophobic and hydrophilic blocks. The material we have synthesized to date have exceptional chemical and mechanical stability. It performs very well in ex-situ testing with KOH solutions and in device testing we have demonstrated >500 h at 50°C in water electrolysis in 5 cm2 cells in 1M carbonate electrolyte at 0.5 A cm-2. We attribute the chemical stability to the fact that we post quaternize the membrane to give methylpipiridinium cations and we assume that this reaction does not fully penetrate down the hydrophilic chain. This leaves a hydrophobic un-quaternized region close to the hydrophobic block that does not allow access to the ether linkage by the hydrated hydroxide anion. Recently a new approach to the telehelic mid block pCOE has been reported that has no ether linkages and allows the hydrophobic outer blocks to be linked by a methylene linker. This gives use an opportunity to directly contrast the chemical stability of two identical triblock co-polymers one with an ether linkage and one with a methylene linkage between blocks. In this presentation we will show the results from ex-situ chemical stability test one at low temperatures and higher hydroxide concentration and one at higher temperature and lower hydroxide concentration. There are many examples in polymer electrolyte chemistry where a simple change leads to unintended consequences. The geometry of the ether linkage versus the methylene linkage will change the way that the polymer chains will organize and entangle in ways that are not currently predictable. To probe the mechanical, chemical and morphological difference between these two polymers we will fully characterize and contrast both polymers physical chemical properties including water uptake, ionic conductivity, DSC, TGA, tensile strength and morphology through SAXS, WAXS and HRTEM. Data for the two polymer membranes will also be contrasted and compared in small laboratory 5 cm2 single cells for both electrolysis in dilute carbonate and H2/O2 fuel cells using conventional catalysts.

Liquid crystalline polyurethane/POSS hybrid nanocomposites pyrolysis studies by Py-GC/MS and TG/FTIR techniques

The process of pyrolysis of liquid crystalline polyurethane (LCPU) composites with polyhedral oligomeric silsesquioxanes (POSS) has been studied using pyrolysis - gas chromatography/mass spectrometry (Py-GC/MS) and thermogravimetry/Fourier transform infrared spectroscopy (TG/FTIR) coupled thermoanalytical techniques. LCPU elastomers modified with POSS molecules with different architectures, bearing aromatic, isobutyl and cycloaliphatic moieties, yield various volatile products of pyrolysis that were collected and characterized. The TG study showed significant differences in the thermal behavior of composites studied, evidencing the influence of the silsesquioxane type on the polyurethane pyrolysis paths. FTIR study of volatile products of thermal decomposition showed the presence of characteristic bands originated from carbonyl, amine, ether, methylene, and unsaturated hydrocarbon linkages. GC/MS investigation confirmed the existence of compounds identified by the IR method. The application of both thermoanalytical methods made it possible to postulate the thermal decomposition routes of PU/POSS hybrids and to point out the main factors responsible for changes in the thermal stability.

Anti-adhesive, anti-biofilm and fungicidal action of newly synthesized gemini quaternary ammonium salts

Newly synthesized gemini quaternary ammonium salts (QAS) with different counterions (bromide, hydrogen chloride, methylcarbonate, acetate, lactate), chain lengths (C12, C14, C16) and methylene linker (3xCH2) were tested. Dihydrochlorides and dibromides with 12 carbon atoms in hydrophobic chains were characterized by the highest biological activity against planktonic forms of yeast and yeast-like fungi. The tested gemini surfactants also inhibited the production of filaments by C. albicans. Moreover, they reduced the adhesion of C. albicans cells to the surfaces of stainless steel, silicone and glass, and slightly to polystyrene. In particular, the gemini compounds with 16-carbon alkyl chains were most effective against biofilms. It was also found that the tested surfactants were not cytotoxic to yeast cells. Moreover, dimethylcarbonate (2xC12MeCO3G3) did not cause hemolysis of sheep erythrocytes. Dihydrochlorides, dilactate and diacetate showed no mutagenic potential.

Manipulating Single‐Molecule Exciplex TADF and Deep‐Blue RTP Through Non‐Covalent π–π Interaction in a Molecular Foldamer

AbstractAlthough the π–π stacking has been widely applied for constructing aggregated emitters in optoelectronics fields, the role of intramolecular non‐covalent π–π interactions has not been well studied. Here, a supramolecular foldermer M‐σ‐C, with the electron donor (D) and acceptor (A) units spatially separated with a non‐covalent bond at a close distance by methylene linker is designed and synthesized. This gives a face‐to‐face D/A stacking configuration with supramolecular π–π interactions. Temperature‐dependent nuclear magnetic resonance measurements and single crystal analyses confirm its folding configuration. In solutions, M‐σ‐C exhibits a single‐molecule exciplex thermally activated delayed fluorescence (TADF) property ascribing to the efficient intramolecular through‐space charge transfer (CT) process. While single‐molecule deep‐blue room temperature phosphorescence (RTP) with a long afterglow lifetime of 236 ms is observed in a nonpolar matrix, which represents the record lifetime among current 3CT‐character featured RTP. This work indicates that intramolecular non‐covalent interactions play an important role in manipulating high‐performance single‐molecule exciplex TADF and RTP, and provide a feasible molecular design strategy for supramolecular chemistry involving the development of optoelectronic materials.

Abstract 4492: Deferiprone optimization for the treatment of triple-negative breast cancer

Abstract Triple-negative breast cancer (TNBC) is the leading cause of new cancer cases and the second leading cause of cancer deaths in American women disproportionately affecting Black and Hispanic women under 40. Currently, there is no targeted therapy for TNBC and treatment options to manage this lethal disease include surgery, adjuvant chemotherapy and radiotherapy. Among the chemotherapy agents, combination of the PARP inhibitors with DNA-damaging results in a more promising anti-tumor effect. A better understanding of TNBC etiology has aided in unraveling the roles of two additional cellular targets - androgen receptor (AR) and histone lysine demethylase (KDM) - in the viability and survival of TNBC. Interestingly, AR overexpression is the most important driver of prostate cancer (PCa). A class of current medications used to treat PCa act as androgen receptor (AR) antagonists (or antiandrogens). Antiandrogens are under investigation in the clinic as potential therapies for luminal AR (LAR) subtypes of TNBC, a particularly worrisome subtype that frequently metastasizes to regional lymph nodes and bones. Although LAR TNBC constitutes 15-20% of TNBCs, it is characterized by minimal response to chemotherapy and aggressiveness. It is therefore plausible to repurpose and optimize antiandrogens, in the context of designed multiple ligands; to obtain a TNBC-targeting therapy effective against several subtypes of this heterogenous disease, including the basal subtype that is responsible for ~80% of TNBC incidence. The proposed therapeutics are dual-acting antiandrogen-KDM inhibitors. The antiandrogen moiety of these agents will enable TNBC cell-targeting and translocation of the drug into the nucleus where inhibition of KDM will prevent transcription of KDMs that promote tumor growth. The three pharmacophores of these agents are (i) an AR binding group, (ii) a linker, and (iii) an iron-binding group. Two functional classes of these compounds, alkyl- and aryl-derivatives, vary in the design of the AR binding moiety. To optimize these agents, the methylene linker length is varied in each class for in vitro determination of the optimal length for increased drug efficacy. The compounds are tested on TNBC cell lines (MDA-MB-231, low AR+; and MDA-MB-453, high AR+), and ER+ BCa (MCF-7) while PCa cell lines (LNCaP PCa, AR+; and DU 145, PCa, AR-) serve as controls for AR dependency of the compounds. Longer linker length compounds exhibited low micromolar cytotoxicity and selectivity for AR+ TNBC and PCa cell lines. Further analysis of lead compounds in TNBC cells aided in understanding the effects on targets, transcriptomic effects via RNA sequencing analysis and the mechanism of action. Thus far, the designed dual-acting therapeutics have potential to revolutionize the design of anticancer drugs and improve treatment outcome for TNBC patients. Citation Format: Alexis Johnston, Adegboyega K. Oyelere. Deferiprone optimization for the treatment of triple-negative breast cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 4492.

Geometry-based cross-linking algorithm for modeling resorcinol resins through united-atom molecular dynamics simulations

The addition-condensation polymerization (ACP) of resorcinol with formaldehyde and the electrochemical polymerization (ECP) of resorcinol were desirable to improve the performances of resins. To achieve computational design, a new geometry-based cross-linking modeling algorithm for three-dimensional (3D) cross-linked network structures of resorcinol resins was developed for molecular dynamics (MD) simulations using a united-atom model. The ACP and ECP of resorcinol were successfully modeled using one algorithm by changing the parameters of the reaction rate constants of methylene, ether, and biphenyl bond formations. Furthermore, reaction judgment was performed under a reaction probability function comprising the Gaussian functions based on the interatomic distance of the reaction candidate atom pairs and interior angles regarding the spatial arrangement of two resorcinol rings. This geometry-based cross-linking algorithm successfully generated strainless 3D cross-linked network structures of the ACP and ECP resorcinol resins without the formation of highly bent unstable structures, such as U-shaped biphenyls. The MD simulation results indicated that the cross-linking of the ACP resin comprising methylene linkages proceeded with a network structure formation mechanism similar to that of phenolic resins, where the cross-linked network structure was determined at the gel point and the reactions after the gel point were to fix and freeze the network structure. For the ECP resins comprising ether and biphenyl linkages, the molar ratio of ether to biphenyl bonds affected the elastic property of the resins, and the incorporation of rigid biphenyl structures into ether-linkage networks increased the elastic modulus. Moreover, an increase in rigidity was observed as a decrease in the Poisson's ratio.

Fluorescent molecular systems based on carborane-perylenediimide conjugates.

This study presents the successful synthesis of two perylenediimide (PDI)-based ortho-carborane (o-carborane) derivatives, PDI-CB1 and PDI-CB2, through the insertion of decaborane into alkyne-terminated PDIs (PDI1 and PDI2). The introduction of o-carborane groups did not alter the optical properties of the PDI units in solution compared to their carborane-free counterparts, maintaining excellent fluorescence quantum yields of around 100% in various solvents. This was achieved by using a methylene linker to minimize electronic interaction between PDI and o-carborane, and by incorporating bulky o-carborane groups at imide- position to enhance solubility and prevent π-π stacking-induced aggregation. Aggregation studies demonstrated that PDI-CB1 and PDI-CB2 have greater solubility than PDI1 and PDI2 in both nonpolar and aqueous solvents. Despite the steric hindrance imparted by the o-carborane units, the solid state emission of PDI-CB1 and PDI-CB2 was affected by aggregation-caused fluorescence quenching. However, solid PDI-CB1 preserved bright red excimer-type emission, which persisted in water-dispersible nanoparticles, indicating potential for application as a theranostic agent combining fluorescence bioimaging with anticancer boron neutron capture therapy (BNCT) due to its high boron content.

One‐Pot Synthesis of Substituted Benzoxazoles Using Aminophenols and α‐Diazoesters via Annulation of Amide Intermediate Using Co2(CO)8 as a Solid Carbonyl Source

AbstractSynthesis of benzoxazoles via amide formation from amino phenols and α‐diazoesters using dicobalt octacarbonyl as a solid CO source is reported. Our methodology provides a strategy for synthesizing substituted benzoxazoles with methylene linker between the benzoxazole and aromatic ring systems. Substrates with different substituents were employed to produce corresponding benzoxazoles. The synthesized compounds were characterized by using standard spectroscopic and analytical techniques including single crystal XRD studies.

Synthesis, characterization and biological activity of a novel N1, N5-bis[2-hydroxyphenyl]-2-methyl-1,5-diaminopentane Schiff base: Effect of methylene spacers on biological activities

A novel ONNO donor tetradentate Schiff base ligand N,N'-bis[2- hydroxyphenyl]-2-methyl-1,5-diaminopentane (1) is synthesized and characterized by using 1H, 13C NMR spectroscopy and mass spectrometry. Biological studies on newly synthesized ligand are carried out and results are compared with the biological activities of known Schiff base ligands: N,N'-bis[{2- hydroxyphenyl }]-1,4-diaminobutane (2) and N,N'-bis[{2- hydroxyphenyl }]-1,3-diaminopropane (3). This comparative study highlights the effect of increasing methylene linkage on the biological activity of these ligands. The anti-microbial activities of all three ligands have been screened against two distinct gram-positive and gram-negative bacteria. In-vitro results of this comparative analysis are also supported by comprehensive molecular docking studies with DNA gyrase subunit B protein of gram-positive bacterium S. aureus and FabH–CoA complex of gram-negative bacterium E. coli. Experimental studies reveal that the spacer group plays a vital role in controlling the biological activities of the ligand. These findings are in good agreement with the theoretical findings. The study demonstrates that the biological activity of ligands is enhanced with increments in the number of spacers. Thus, the newly synthesized ligand (1) with the most extended spacer among the three showed the highest biological activity compared to other two ligands, similar to the popular drug Ciprofloxacin.

Selective Cleavage of Methylene Linkage in Kraft Lignin over Commercial Zeolite in Isopropanol.

Lignin is an aromatic polymer that constitutes over 30 wt% of lignocellulosic biomass and is the most important source of renewable aromatics in nature. The global paper industry generates more than 70 million tons of Kraft lignin annually. Depolymerization of Kraft lignin to value-added monomers can significantly enhance the profitability of biorefinery. However, the method is impeded by the severe condensation of Kraft lignin during the pulping process, which forms robust C-C bonds and results in low monomer yields. In this study, we present a stepwise approach for producing valuable aromatic monomers from Kraft lignin through the cleavage of both C-O and C-C bonds. The approach initiated with complete cleavage of C-O bonds between lignin units within Kraft lignin through alcoholysis in isopropanol, resulting in a monomer yield of 8.9 %. Subsequently, the selective cleavage of methylene linkages present in the residual dimers and oligomers was achieved with commercial MCM-41 zeolite in the same pot, proceeding with an additional monomer yield of 4.0 %, thereby increasing the total monomer yield by 45 %. This work provides an avenue for increasing the depolymerization efficiency of Kraft lignin.

Oxazoline-appended benzimidazolium salts for selective micromolar detection of Fe3+ ions in water and an experimental and theoretical insight into Fe3+ ion sensing mechanism

Four novel water-soluble benzimidazolium and bis-benzimidazolium salts appended with oxazolines through methylene linker were synthesized and characterized. These compounds with a “fluorophore-spacer-receptor” design displayed large Stokes shifts, which was attributed to the TICT phenomenon. These salts were able to selectively detect Fe3+ ions in water despite other competing metal ions being present. A quenching of fluorescence intensity was observed with quenching constants (Ksv) ranging from 8.18 × 104 to 2.51 × 105 M−1 upon complexation of Fe3+ ions with the probes in a 1:1 stoichiometry. A visible color change from colorless to orange-brown was observed during complex formation. The selective sensing of Fe3+ ions and its binding to the benzimidazolium salts was explored with the help of theoretical and experimental studies. The sensing mechanism traces the fluorescence quenching of ligands by ferric ions to a redox reaction. The feasibility of this redox reaction between the ligand and ferric ions was established by cyclic voltammetry experiments The binding constants were found to be as high as 2.29 × 105 M−1 and the detection limit was found to be as low as 0.697 µM, which is appreciably lower than the WHO guidelines (5 µM) for Fe3+ ions in drinking water. The probes were stable and sensitive to Fe3+ over a wide pH range, making them potentially useful in biological and environmental applications. A hands-on experimental kit was also explored for colorimetric quantification using a smartphone camera.

6-azido and 6-azidomethyl uracil nucleosides

Azido nucleosides have been utilized for click reactions, metabolic incorporation into cellular DNA, and fluorescent imaging of live cells. Two classes of 6-azido modified uracil nucleosides; one with azido group directly attached to uracil ring and second with azido group attached via methylene linker are described. The 6-azido-2’-deoxyuridine (6-AdU) was prepared in 55% overall yield by lithiation-based regioselective C6-iodination of silyl protected 2’-deoxyuridine followed by treatment with sodium azide and deprotection with TBAF. Lithiation-based C6-alkylation of the protected uridine with methyl iodide followed by the oxidation of the 6-methyl product with selenium dioxide and the subsequent mesylation and azidation of the resulting 6-hydroxymethyl group gave after deprotection 6-azidomethyluridine (6-AmU) in 61% overall yield. Direct lithiation-based C6-hydroxymethylation followed by mesylation/azidation sequence and deprotection provided 6-AmU or 6-azidomethyl-2’-deoxyuridine (6-AmdU). Yields for the lithiation-based regioselective C6-iodination and alkylation were higher for uridine than 2’-deoxyuridine derivatives and they appear to be less dependent on the sugar protection group used. Strain promoted click reactions of 6-AdU and 6-AmdU with symmetrically fused cyclopropyl cyclooctyne (OCT) provided fluorescent triazoles. DFT-calculated dihedral angles and energy differences for the favored anti and syn conformation of 6-AdU and 6-AmdU versus their C5 azido counterparts are discussed.

Late-stage Ligand Modification After Coordination Strengthens Stereoselectively Self-Assembled Hemiaminal Ether Complexes.

Fragile hemiaminal ether linkages present in the backbone of koneramines (LR OR'), tridentate ligands, bound to copper(II) in stereoselectively self-assembled syn-[Cu(LR OR')X2 ] complexes were transformed into sturdy methylene linkages to make corresponding rac-[Cu(LR H)Cl2 ] complexes by late-stage ligand modification after coordination with the retention of coordination sphere. The generality of stereoselective self-assembly of koneramine complexes is shown by utilising a number of metal ions, anions, amines, alcohols and thiols with complete characterisations.

Depolymerization of Methylene Linkage in Condensed Lignin with Commercial Zeolite in Water

Depolymerization of Methylene Linkage in Condensed Lignin with Commercial Zeolite in Water