Methine Research Articles

ALKALI ALCOHOLYSIS OF 2-PHENYL-gem-DICHLOROCYCLOPROPANE UNDER MICROWAVE RADIATION CONDITIONS

By alkaline alcoholysis of 2-phenyl-gem-dichlorocyclopropane, α-phenylacrolein acetals were synthesized under microwave irradiation (MWI) conditions: [1-(diethoxymethyl)vinyl]benzene, [1-(di-propyloxymethyl)vinyl]benzene, [1-(di- iso-propyloxymethyl)vinyl]benzene, [1-(dibutoxymethyl)vinyl]benzene, [1-(di-iso-butoxymethyl)-vinyl]benzene, {1-[bis(1-methylbutoxy)methyl]vinyl}benzene, [1-(dially-loxymethyl)vinyl]benzene, 1,1-[(2-phenylprop-1-en-3,3-diyl)bis(oxymethylene)]dibenzene. It was found that microwave radiation reduces the synthesis time by 70%, while the yield is more than 80%, and the selectivity of acetal formation is more than 90%. Using the method of competitive kinetics, it was established that primary alcohols such as ethanol, propanol and butanol are similar in activity. The structures of the obtained compounds were studied using nuclear magnetic resonance (NMR) and chromatography-mass spectrometry methods. The formation of acetals is proven by the presence of signals from the quaternary carbon atom in the region δс 142.35-146.49 ppm, and a doublet signal from protons at δн 5.01–5.71 ppm. and a singlet signal of the proton of the methine group in the region at 4.89-5.50 ppm. Analysis of the mass spectra of acetals showed the presence of maximum intensity of oxonium ions, due to α-, β-break relative to the oxygen atom. For the obtained acetals, the presence in the mass spectra of [M-H]+ cations, formed as a result of the release of a hydrogen radical from a molecular radical ion, was recorded. The peaks of [M-R]+ and [M-H]+ ions were inferior in intensity to [M-RO]+ cations. Most likely, this is explained by the stability of the [M-RO]+ cations relative to [M-C6H5C2H2]+ and [M-H]+, as well as the ease of eliminating RO• from the alkoxy group. In addition, for acetals of this type, the formation of a radical cation with m/z = 132 was observed, resulting from the release of the R radical from the second alkoxy group. Also, the mass spectra of acetals were characterized by the presence of a cation m/z = 77 and an intensity of 29-80%. Borisova Yu.G., Musin A.I., Voinov A.V., Spirikhin L.V., Raskil’dina G.Z., Sultanova R.M., Zlotskii S.S. Alkali alcoholysis of 2-phenyl-gem-dichlorocyclopropane under microwave radiation conditions. ChemChemTech [Izv. Vyssh. Uchebn. Zaved. Khim. Khim. Tekhnol.]. 2024. V. 67. N 11. P. 15-21. DOI: 10.6060/ivkkt.20246711.7046.

Macrocyclic porphyrin photocatalysts without metal chelation: A novel pathway for complete degradation of tough halophenols with longwave visible LED light source

Halophenols are toxic and persistent pollutants in water environments which poses harm to various organisms. Due to their high stability and long residence time, ultraviolet radiation, heavy metals and oxidizing agents have been largely adopted on treating these compounds. However, these treatment methods could pose toxicity or hazardous risks to the marine environment and plant operators. In this study, a water-soluble porphyrin photocatalyst was synthesized and introduced for halophenol treatment using UV-free LED white light. The porphyrin catalyst is a macrocyclic ring consisting of pyrroles linked with methine bridges, the highly conjugated ring provided the superior functionality of visible light absorption. Surprisingly, over 99 % degradation of halophenols and over 90 % dehalogenation have been achieved without metal chelation, even higher than those of transition metal porphyrins with inclusion of Fe3+, Zn2+, Cu2+, Co2+, Ni2+, and Mn2+. Ring-opening reactions were confirmed with the formation of carboxylic acids; dicarboxylic acids like acrylic acid, and malonic acid; while fumaric acid was the main product. Total organic carbon results indicated no CO2 produced during the reaction. Triplet absorbance and scavenger studies also indicated that singlet oxygen and conduction band electrons are the main radical species for halophenol degradation. The 100-fold singlet emission quenching over triplet absorption quenching indicated that the excited electrons tend to be transferred via singlet state. This concept brings along new approaches detoxifying halophenol-related wastewater without UV, metals and other additives, which is more environmentally-friendly and sheds light to the conversion of toxic materials into useful chemical precursors.

1,4,5,8-tetrasubstituted dihydroanthracene-based triptycene trisquinones: Synthesis, structural, and physicochemical characterization

1,4,5,8-tetrasubstituted dihyroanthracene-based triptycene trisquinones (TT) molecules, THAO-TT and tris(THAO)-TT, were synthesized by Diels–Alder reaction between TT and 1,4,5,8-tetrakis(hexyloxy)anthracene to produce the extended triptycene derivatives containing electron-accepting functionality. The prepared THOA-TT and tris(THOA)-TT exhibited excellent thermal stability owing to the rigid TT framework. The optical and redox properties of THOA-TT and tris(THOA)-TT were controlled by the homoconjugation between the benzoquinone units and the peripheral units through the connecting methine groups.

Effect of core–sheath bi‐polymeric scaffolds fabricated from acid‐soluble collagen and poly(lactic acid) derivatives on wound healing

AbstractThe core–sheath bi‐polymeric scaffold has been proven as an encouraging material based on the requirement of scaffolds. This study aims to prepare electrospun core–sheath scaffolds by using acid‐soluble collagen (ASC) as core material and poly(lactic acid) (PLA) or PLA‐g‐VAc as sheath material to get the most in combination from a hydrophilic and a hydrophobic polymer. ASC is extracted from waste Tilapia fish skin conserving the triple helix structure of the α1 (130 kDa) chain, and a α2 (120 kDa) chain cross‐linked with the β (280 kDa) chain confirmed by amino acid profile, sodium dodecyl sulphate‐polyacrylamide gel electrophoresis. PLA‐g‐VAc is prepared by grafting vinyl acetate (VAc) onto the PLA chain using benzoyl peroxide as the initiator. FT‐IR, 1H NMR, and 13C NMR of PLA‐g‐VAc reveal that grafting occurs between the double bond of VAc and the methine group of PLA. The morphology of the scaffolds is determined by the field emission scanning electron microscope. FT‐IR, thermogravimetric analysis, differential scanning calorimetry, XRD, and water contact angle measurements are used for further characterization of scaffolds. In vivo, cytotoxicity analysis on the Vero cell line exposes that scaffolds are biocompatible. Application of scaffolds to the surgically produced wounding of skin in a rat model followed by histological assay indicates the enhanced properties of core–sheath scaffolds rather than the single polymeric scaffolds.

Interphase Engineering via Solvent Molecule Chemistry for Stable Lithium Metal Batteries

AbstractLithium metal battery has been regarded as promising next‐generation battery system aiming for higher energy density. However, the lithium metal anode suffers severe side‐reaction and dendrite issues. Its electrochemical performance is significantly dependant on the electrolyte components and solvation structure. Herein, a series of fluorinated ethers are synthesized with weak‐solvation ability owing to the duple steric effect derived from the designed longer carbon chain and methine group. The electrolyte solvation structure rich in AGGs (97.96 %) enables remarkable CE of 99.71 % (25 °C) as well as high CE of 98.56 % even at −20 °C. Moreover, the lithium‐sulfur battery exhibits excellent performance in a wide temperature range (−20 to 50 °C) ascribed to the modified interphase rich in LiF/LiO2. Furthermore, the pouch cell delivers superior energy density of 344.4 Wh kg−1 and maintains 80 % capacity retention after 50 cycles. The novel solvent design via molecule chemistry provides alternative strategy to adjust solvation structure and thus favors high‐energy density lithium metal batteries.

Interphase Engineering via Solvent Molecule Chemistry for Stable Lithium Metal Batteries.

Lithium metal battery has been regarded as promising next-generation battery system aiming for higher energy density. However, the lithium metal anode suffers severe side-reaction and dendrite issues. Its electrochemical performance is significantly dependant on the electrolyte components and solvation structure. Herein, a series of fluorinated ethers are synthesized with weak-solvation ability owing to the duple steric effect derived from the designed longer carbon chain and methine group. The electrolyte solvation structure rich in AGGs (97.96 %) enables remarkable CE of 99.71 % (25 °C) as well as high CE of 98.56 % even at -20 °C. Moreover, the lithium-sulfur battery exhibits excellent performance in a wide temperature range (-20 to 50 °C) ascribed to the modified interphase rich in LiF/LiO2. Furthermore, the pouch cell delivers superior energy density of 344.4 Wh kg-1 and maintains 80 % capacity retention after 50 cycles. The novel solvent design via molecule chemistry provides alternative strategy to adjust solvation structure and thus favors high-energy density lithium metal batteries.

Design of New Bis(1,2,3-triazol-1-yl)methane-Based Nitrogen Ligands: Synthesis and Coordination Chemistry.

The reaction between bis(1,2,3-triazol-1-yl)methane derivatives and nBuLi and various aldehydes, yielded novel neutral ligand precursors incorporating alcohol functional groups. The resulting compounds exhibited distinct characteristics depending on the steric hindrance of the aldehyde employed. In instances where aromatic aldehydes were utilized, functionalization occurred at the methine group bridging both triazole rings. Conversely, the use of pivalic aldehyde prompted functionalization at the C5 position of the triazole ring. These compounds were subsequently employed as ligand precursors in the synthesis of organometallic aluminum and zinc complexes, yielding dinuclear complexes with high efficiency. The structural elucidation of all compounds was accomplished through spectroscopic methods and validated by X-ray crystallography. Preliminary catalytic investigations into the coupling reaction of cyclohexene oxide and CO2 revealed that aluminum and zinc complexes catalyzed the selective formation of polyether and polycarbonate materials, respectively.

Copper(II)-Assisted Degradation of Pheophytin a by Reactive Oxygen Species.

The central ion Mg2+ is responsible for the differences between chlorophyll a and its free base in their reactivity toward metal ions and thus their resistance to oxidation. We present here the results of spectroscopic (electronic absorption and emission, circular dichroism, and electron paramagnetic resonance), spectroelectrochemical, and computational (based on density functional theory) investigations into the mechanism of pheophytin, a degradation that occurs in the presence of Cu ions and O2. The processes leading to the formation of the linear form of tetrapyrrole are very complex and involve the weakening of the methine bridge due to an electron withdrawal by Cu(II) and the activation of O2, which provides protection to the free ends of the opening macrocycle. These mechanistic insights are related to the naturally occurring damage to the photosynthetic apparatus of plants growing on metal-contaminated soils.

Hydrophobic hydration of the hydrocarbon adamantane in amorphous ice.

Hydrophobic molecules are by definition difficult to hydrate. Previous studies in the area of hydrophobic hydration have therefore often relied on using amphiphilic molecules where the hydrophilic part of a molecule enabled the solubility in liquid water. Here, we show that the hydrophobic adamantane (C10H16) molecule can be fully hydrated through vapour codeposition with water onto a cryogenic substrate at 80 K resulting in the matrix isolation of adamantane in amorphous ice. Using neutron diffraction in combination with the isotopic substitution method and the empirical potential structure refinement technique, we find that the first hydration shell of adamantane is well structured consisting of a hydrogen-bonded cage of 28 water molecules that is also found in cubic structure II clathrate hydrates. The four hexagonal faces of the 51264 cage are situated above the four methine (CH) groups of adamantane whereas the methylene (CH2) groups are positioned below the edges of two adjoining pentagonal faces. The oxygen atoms of the 28 water molecules can be categorised on the basis of symmetry equivalences as twelve A, twelve B and four C oxygens. The water molecules of the first hydration shell display orientations consistent with those expected for a clathrate-hydrate-type cage, but also unfavourable ones with respect to the hydrogen bonding between the water molecules. Annealing the samples at 140 K, which is just below the crystallisation temperature of the matrix, removes the unfavourable orientations and leads to a slight increase in the structural order of the first hydration shell. The very closest water molecules display a tendency for their dipole moments to point towards the adamantane which is attributed to steric effects. Other than this, no significant polarisation effects are observed which is consistent with weak interactions between adamantane and the amorphous ice matrix. FT-IR spectroscopy shows that the incorporation of adamantane into amorphous ice leads to a weakening of the hydrogen bonds. In summary, the matrix-isolation of the highly symmetric adamantane in amorphous ice provides an interesting test case for hydrophobic hydration. Studying the structure and spectroscopic properties of water at the interface with hydrophobic hydrocarbons is also relevant for astrophysical environments, such as comets or the interstellar medium, where amorphous ice and hydrocarbons have been shown to coexist in large quantities.

Crystal structures of sixteen phosphane chalcogenide complexes of gold(I) chloride, bromide and iodide.

The structures of 16 phosphane chalcogenide complexes of gold(I) halides, with the general formula R 1 3- nR 2 nPEAuX (R 1 = t-butyl; R 2 = isopropyl; n = 0 to 3; E = S or Se; X = Cl, Br or I), are presented. The eight possible chlorido derivatives are: 1a, n = 3, E = S; 2a, n = 2, E = S; 3a, n = 1, E = S; 4a, n = 0, E = S; 5a, n = 3, E = Se; 6a, n = 2, E = Se; 7a, n = 1, E = Se; and 8a, n = 0, E = Se, and the corresponding bromido derivatives are 1b-8b in the same order. However, 2a and 2b were badly disordered and 8a was not obtained. The iodido derivatives are 2c, 6c and 7c (numbered as for the series a and b). All structures are solvent-free and all have Z' = 1 except for 6b and 6c (Z' = 2). All mol-ecules show the expected linear geometry at gold and approximately tetra-hedral angles P-E-Au. The presence of bulky ligands forces some short intra-molecular contacts, in particular H⋯Au and H⋯E. The Au-E bond lengths have a slight but consistent tendency to be longer when trans to a softer X ligand, and vice versa. The five compounds 1a, 5a, 6a, 1b and 5b form an isotypic set, despite the different alkyl groups in 6a. Compounds 3a/3b, 4b/8b and 6b/6c form isotypic pairs. The crystal packing can be analysed in terms of various types of secondary inter-actions, of which the most frequent are 'weak' hydrogen bonds from methine hydrogen atoms to the halogenido ligands. For the structure type 1a, H⋯X and H⋯E contacts combine to form a layer structure. For 3a/3b, the packing is almost featureless, but can be described in terms of a double-layer structure involving borderline H⋯Cl/Br and H⋯S contacts. In 4a and 4b/8b, which lack methine groups, Cmeth-yl-H⋯X contacts combine to form layer structures. In 7a/7b, short C-H⋯X inter-actions form chains of mol-ecules that are further linked by association of short Au⋯Se contacts to form a layer structure. The packing of compound 6b/6c can conveniently be analysed for each independent mol-ecule separately, because they occupy different regions of the cell. Mol-ecule 1 forms chains in which the mol-ecules are linked by a Cmethine⋯Au contact. The mol-ecules 2 associate via a short Se⋯Se contact and a short H⋯X contact to form a layer structure. The packing of compound 2c can be described in terms of two short Cmethine-H⋯I contacts, which combine to form a corrugated ribbon structure. Compound 7c is the only compound in this paper to feature Au⋯Au contacts, which lead to twofold-symmetric dimers. Apart from this, the packing is almost featureless, consisting of layers with only translation symmetry except for two very borderline Au⋯H contacts.

Phytochrome-Interacting Proteins.

Phytochromes are photoreceptors of plants, fungi, slime molds bacteria and heterokonts. These biliproteins sense red and far-red light and undergo light-induced changes between the two spectral forms, Pr and Pfr. Photoconversion triggered by light induces conformational changes in the bilin chromophore around the ring C-D-connecting methine bridge and is followed by conformational changes in the protein. For plant phytochromes, multiple phytochrome interacting proteins that mediate signal transduction, nuclear translocation or protein degradation have been identified. Few interacting proteins are known as bacterial or fungal phytochromes. Here, we describe how the interacting partners were identified, what is known about the different interactions and in which context of signal transduction these interactions are to be seen. The three-dimensional arrangement of these interacting partners is not known. Using an artificial intelligence system-based modeling software, a few predicted and modulated examples of interactions of bacterial phytochromes with their interaction partners are interpreted.

Investigation of Surakhani light crude oil compounds as a case study using modern spectroscopic techniques

The complex application of modern analysis methods (FT-IR, NMR, GC–MS and UV/Vis) allowed us to study in detail the composition of the crude Surakhani light oil with a complex composition. An accurate and comprehensive study of the composition of crude oils makes it easier to find the necessary field of application for them. For this purpose, the studied crude oil was separated into two fractions, such as paraffinic–naphthenic and aromatic (groups 1st, 2nd, 3rd and tar), by absorption column chromatography. The results show that Surakhani light oil is a paraffin–naphthene-based oil that contains 74% of paraffin–naphthene, 11.15% of aromatic hydrocarbons and 14.8% of gases. It has been shown that the aromatic group of compounds is mainly composed of mono- and bicyclic compounds and has alkyl chains with different lengths and branches (with the presence of methylene and methine groups). Based on the parameters of the structural group, it was found that the portion of H atoms in the aromatic nucleus and alkyl chain was 4.4–20.1% and 79.9–95.6%, respectively. The degree of aromaticity of the separated aromatic group is approximately 50%, which proves that these compounds are alkylated. The structure of the isolated paraffin–naphthene fraction has also been investigated by spectroscopic techniques, and it has been determined that this fraction is composed of iso- and cycloalkanes with alkyl chains of different lengths. As it is seen from the obtained results, unlike the other oils existing on the Absheron Peninsula, Surakhani light oil consists of one- and two-ring naphthene and isostructured paraffinic hydrocarbons. The composition of this petroleum mainly consists of isosubstituted alkyl cycloalkanes and relict, viz. biologically active hydrocarbons such as sterane and hopane used in medicine. It seems that the methodology developed for the petroleum industry can be used in other fields such as medicine.Graphical abstract

Biotransformation of Lignocellulosic Biomass Hydrolysate into Polyhydroxybutyrate Biopolymer via Ralstonia Eutropha

Currently, a rampant cultural shift is occurring in the modern world to progressively substitute fossil-derived plastics and shift to novel biomaterials that are benign to the environment owing to increased awareness of environmental sustainability along with the implementation of strict regulations worldwide. Polyhydroxyalkanoates (PHAs) are promising intracellular biodegradable polymers that have attracted considerable focus owing to their biocompatibility, biodegradability, non-toxicity and environment-friendly nature to function in diverse applications notably in the pharmaceutical, medical, textile, materials, fuel, agricultural industries. Nonetheless, despite its huge market potential, the commercial growth of PHA is achieved on a small extent only, since the cost-effectiveness of this product is highly debatable owing to the high production cost of processing the carbon substrate. The goal behind this research study is to explore the possibility of exploiting low-cost carbon substrates from low-value lignocellulosic materials that would have otherwise been discarded as waste and add stress to the landfill to manufacture biopolymer compounds that are used in everyday lives as well as to enhance the functionality and yields of glucose from PHA substrates that can undergo industrial upscaling. One of the major challenges of transforming lignocellulosic biomass into fermentable sugars is the recalcitrant nature of the fibre which renders it very resistant to the release of sugars for fermentation. Since lignocellulosic biomass has a specific attribute such as an extremely coordinated matrix which renders it very resistant to the release of sugars for fermentation owing to biological degradation, a pre-treatment phase is necessary prior to the hydrolysis stage for the transformation of the fermentable sugars. This study focuses on the biosynthesis of biopolymers from lignocellulosic biomass through sustainable approaches such as enzyme and microbial activities in order to examine its viability as a replacement for traditional polymers. Cupriavidus Necator H16 (Ralstonia Eutropha) having 8×108 CFU/ml viable colonies were cultured at 30 oC and was inoculated in submerged fermentation of M9 minimal salt medium using 1% reducing sugar from Furcraea Foetida as carbon source. Batch fermentation of PHB in submerged cultivation conducted for a residence time from 0 to 48h resulted in a dry cell weight from 0.32±0.05% to 1.62±0.05%. The nitrogen limiting phase was achieved after 48h and 17.05±0.35% of PHB was extracted from 3ml of the fermentation broth. The PHB yield was dramatically lower than reported optimal yields of 37.55 to 97.80% from works of literature. Nonetheless, Fourier-transform infrared spectroscopy (FTIR) spectroscopy revealed characteristics bands for carbonyl, methine and ester groups along with intermolecular hydrogen bonds in the biopolymer. Sudan Black B and FTIR spectrum demonstrate that PHB biosynthesis successfully bioaccumulates inside the cells of Ralstonia Eutropha using cellulose from Lignocellulosic biomass (LCB) as carbon source. Hence, the process needs to be optimized in terms of variables such as inoculum size, inoculum concentration, incubation time and salt medium conditions in order to maximise the production of PHB from Furcraea Foetida in Ralstonia Eutropha cultivation.

Nanographene-Based Decoration as a Panchromatic Antenna for Metalloporphyrin Conjugates.

Porphyrins, a type of heterocyclic aromatic compounds consisting of tetrapyrroles connected by four substituted methine groups, are appealing building blocks for solar energy applications. However, their photosensitization capability is limited by their large optical energy gap, which results in a mismatch in absorption toward efficient harvesting of the solar spectrum. Porphyrin π-extension by edge-fusing with nanographenes can be employed for narrowing their optical energy gap from 2.35 to 1.08eV, enabling the development of porphyrin-based panchromatic dyes with an optimized energy onset for solar energy conversion in dye-sensitized solar fuel and solar cell configurations. By combining time-dependent density functional theory with fs transient absorption spectroscopy, it is found that the primary singlets, which are delocalized across the entire aromatic part, are transferred into metal centred triplets in only 1.2ps; and subsequently, relax toward ligand-delocalized triplets. This observation implies that the decoration of the porphyrin moiety with nanographenes, while having a large impact on the absorption onset of the novel dye, promotes the formation of a ligand-centred lowest triplet state of large spatial extension, potentially interesting for boosting interactions with electron scavengers. These results reveal a design strategy for broadening the applicability of porphyrin-based dyes in optoelectronics.

Evaluation of Molecular Fragmentation in Polycyclic Aromatic Hydrocarbons by Time-of-Flight Secondary Ion Mass Spectrometry

In time-of-flight secondary ion mass spectrometry (TOF-SIMS), ionized molecules and molecular fragments (secondary ions) are generated in collisions of high-energy ions (primary ions) with a solid sample surface. Mass spectra of the emitted secondary ions are typically used to identify molecular species and to determine their spatial distribution on the sample surface. Here, we extend this application in a TOF-SIMS study of a series of polycyclic aromatic hydrocarbons (PAHs) where we focus on the fragmentation of these molecules, with the purpose of better understanding the fragmentation patterns of heavy aromatic molecules in petroleum. For all PAHs, the collision process generated (i) a series of smaller cation fragments and (ii) cations close in size to the original PAH (molecular cations). Stark differences are measured for various PAHs regarding the abundance of smaller fragments versus molecular cations. Observation of hydrogen-deficient (H-deficient) cation fragments indicates the formation of polyynes and allenes. For PAHs producing higher fractions of small cation fragments, these ions are surprisingly hydrogen rich (H-rich). The H/C ratio of fragments does not scale with the fraction of Clar sextet carbon, nor with energies of low-lying electronic transitions. Free radical cation fragments tend to be suppressed. For sufficiently large fragments, aromatic cations appear to be formed and include some free radical aromatics. There is ample production of molecular ions with loss of a single carbon atom or a methine group, which corresponds to the reduction of a 6-membered aromatic ring to a 5-membered ring. There is some enhancement of free radical molecular cations due to the corresponding formation of neutral polyynes. Fragment anions are also produced with a strong preference for very H-deficient carbon clusters, in some cases being the same as carbon cluster anions observed in space. Comparisons of PAH TOF-SIMS spectra with those of asphaltenes are discussed in detail.

Combined Structural and Computational Study of the mRubyFT Fluorescent Timer Locked in Its Blue Form.

The mRubyFT is a monomeric genetically encoded fluorescent timer based on the mRuby2 fluorescent protein, which is characterized by the complete maturation of the blue form with the subsequent conversion to the red one. It has higher brightness in mammalian cells and higher photostability compared with other fluorescent timers. A high-resolution structure is a known characteristic of the mRubyFT with the red form chromophore, but structural details of its blue form remain obscure. In order to obtain insight into this, we obtained an S148I variant of the mRubyFT (mRubyFTS148I) with the blocked over time blue form of the chromophore. X-ray data at a 1.8 Å resolution allowed us to propose a chromophore conformation and its interactions with the neighboring residues. The imidazolidinone moiety of the chromophore is completely matured, being a conjugated π-system. The methine bridge is not oxidized in the blue form bringing flexibility to the phenolic moiety that manifests itself in poor electron density. Integration of these data with the results of molecular dynamic simulation disclosed that the OH group of the phenolic moiety forms a hydrogen bond with the side chain of the T163 residue. A detailed comparison of mRubyFTS148I with other available structures of the blue form of fluorescent proteins, Blue102 and mTagBFP, revealed a number of characteristic differences. Molecular dynamic simulations with the combined quantum mechanic/molecular mechanic potentials demonstrated that the blue form exists in two protonation states, anion and zwitterion, both sharing enolate tautomeric forms of the C=C-O- fragment. These two forms have similar excitation energies, as evaluated by calculations. Finally, excited state molecular dynamic simulations showed that excitation of the chromophore in both protonation states leads to the same anionic fluorescent state. The data obtained shed light on the structural features and spectral properties of the blue form of the mRubyFT timer.

Antioxidative limonoids from Swietenia macrophylla fruits: Experimental, DFT (Density Functional Theory) approach, and docking study

Phytochemical investigation of the methanol extract of Swietenia macrophylla fruit first led to the isolation of four limonoids seneganolide (1), khayanone (2), khayanolide B (3), and 6-acetoxy-methyl angolensate (4). Compound 3 (IC50 3.18 µg/mL) was better than the positive control ascorbic acid (IC50 7.18 µg/mL) in an antioxidative assay against DPPH (2,2-diphenyl-1-picrylhydrazyl) radicals. Compound 1 showed strong mosquito larvicidal activity against Aedes aegypti with LC50 values of 34.1–44.1 µg/mL and LC90 values of 57.3–65.1 µg/mL for 24 and 48-h exposures. Based on DFT (density functional theory)/B3LYP/6–311G(d,p) method, the SPL-ET (sequential proton loss-electron transfer) antioxidative mechanism is essential for compound 3 in polar solvents, while the HAT antioxidative route is appropriate in weak or non-polar mediums. Methine group at carbon C-6 of this compound exerted the lowest BDE (bond dissociation energy) values of 72.9–73.8 kcal/mol in both four studied mediums gas, benzene, methanol, and water. In the kinetic reactions with HOO•, CH3OO•, and •NO2 radicals, 6-CH also generated the lowest Gibbs free energy of activation ΔG# values of 14.5–24.2 kcal/mol and the highest rate constant K values of 6.068 × 101–1.75 × 106 L/mol.s. A molecular docking (MD) analysis of seneganolide with relevant Ae. aegypti protein targets revealed AChR (acetylcholine receptor), ACE2 (angiotensin converting enzyme 2), and aaNAT (arylalkylamine N-acetyltransferase) to be potential targets of this compound.

Carboxyl substituted Bambus[6]uril as a novel macrocyclic receptor for cyanide anion: A DFT study

Using density functional theory calculations, the most probable conformation of CN– based carboxyl substituted bambus[6]uril complex was investigated. The molecular complex shows the C3 symmetry in which the cyanide anion resides in the cavity of the macrocyclic complex. The parent macrocycle reduces the diameter of its inner cavity to adjust the anionic specie. Furthermore, we report the AIM and NCI analysis to interpret various non-covalent interactions between the CN– and carboxyl-substituted BU[6] macrocycle. The results of NCI analysis show certain types of noncovalent interactions between the receptor and anion, which are responsible for the stability of the complex. Four N….…H-type interactions between the anion and hydrogen atoms of the methine group in the macrocycle exhibit H-bonds, which are analyzed by QTAIM. The interaction energy of the optimized complex was –81.25 kcal/mol.

Site-Selective Electrochemical Oxidation of Glycosides.

Quinuclidine-mediated electrochemical oxidation of glycopyranosides provides C3-ketosaccharides with high selectivity and good yields. The method is a versatile alternative to Pd-catalyzed or photochemical oxidation and is complementary to the 2,2,6,6-tetramethylpiperidine 1-oxyl (TEMPO)-mediated C6-selective oxidation. Contrary to the electrochemical oxidation of methylene and methine groups, the reaction proceeds without oxygen.

Site‐ and Stereoselective C(sp3)−H Borylation of Strained (Hetero)Cycloalkanols Enabled by Iridium Catalysis

AbstractTransition metal‐catalyzed site‐ and stereoselective C−H activation of strained (hetero)cycloalkanes remains a formidable challenge. We herein report a carbamate‐directed iridium‐catalyzed asymmetric β−C(sp3)−H borylation of cyclopropanol derivatives. A variety of densely functionalized cyclopropanols were obtained in good enantioselectivities via desymmetrization and kinetic resolution. In addition, site‐selective C(sp3)−H borylation of methine groups furnished α‐borylated (hetero)cycloalkanols in moderate to good yields. The synthetic utility of the method was further shown in a gram‐scale synthesis and diverse downstream transformations of borylated products.