The Laojunshan ore cluster region is situated at the north Song Chay dome, which is the junction of the Yangtze, the Cathaysia, and the Indo-China Blocks. The north Song Chay dome characterized by the Laojunshan metamorphic core complex is an important ore-forming region for W-Sn-Pb-Zn-In elements related to the Late Cretaceous granitic magmatism. In this paper, the Bi-dimensional empirical mode decomposition (BEMD) is applied to separate gravity components from the original gravity data, combined with the known geological and mineralized information, to explore the relationships between the gravity components and various ore-controlling factors at different depths. Four intrinsic mode functions (IMFs) and a residue are obtained. They may imply the spatial distribution of the geological bodies with featured gravity components at different depths. The results are shown as follows:(1) The low-pass filtering gravity component (BIMF4) implies the deeply buried geological units in the study region. The Cretaceous Laojunshan granitic complex and the Nanwenhe gneissic granite display negative gravity components and weak positive gravity components, respectively. The former is closely related to Sn-Zn-In mineralization, the latter is closely related to W polymetallic deposits. Therefore, the negative gravity components showing the Laojunshan granitic complex are the prospecting targets for deeply buried Sn-Zn-In deposits. The weak positive gravity components displaying the Nanwenhe gneissic granite are the prospecting targets for deeply buried W polymetallic deposits.(2) The band-pass filtering gravity component (BIMF3) implies the geological units at middle depth. The skarn-type Sn-W polymetallic deposits are observed in the transition zones from the positive to the negative gravity components, which coincide with the contact metasomatic zones between the Cretaceous granite and the Cambrian-Devonian carbonate rocks. Some small quartz vein W deposits occur within the Cretaceous Laojunshan granite with negative gravity components, and some layered W deposits occur in the Silurian gneissic granite with a weak positive gravity component.(3) High-pass filtering gravity component (BIMF2) implies geological units at the shallow crust, which shows that most of the deposits (occurrences) are located within the positive gravity component zones. These positive gravity component zones should be ore-finding targets for further prospecting for the undiscovered Sn and W polymetallic deposits.(4) The gravity components separated by BEMD coincide with the spatial distribution of the granites associated with various types of mineralization and alteration zones at different depths, which will give insights for further prospecting for concealed ore bodies in this study region.