Background Metabolic reprogramming has emerged as a key hallmark of cancer progression, though its role in tumor aggressiveness is still evolving. Here, using a pan-cancer genome approach, we aimed to comprehensively assess the metabolic reprogramming involved in tumor aggressiveness in carcinomas and identify metabolic hubs which can be therapeutically targeted to treat aggressive tumors in the clinic. Methods In this study, we employed a stringent pan-cancer multi-omic metabolism-targeted differential expression approach to identify the metabolic hubs regulating tumor aggressiveness. mRNA, miRNA, DNA methylation and mutation profiling data of tumors representing 14 different types of carcinomas was downloaded from TCGA database. Cell line expression profiling and drug response data was downloaded from CCLE database. Pathway enrichment, GSEA, String protein-protein interaction, miRNA-mRNA prediction, network random-walk and CCLE drug response analyses were carried out. Results We identified downregulated expression of enzymes involved in oxidative phosphorylation as a key common factor across carcinomas, aligning with the Warburg effect. Additionally, we established that the decreased dependence on oxidative phosphorylation is driven by elevated expression of miR-199 family miRNAs that inhibit their expression at the post-transcriptional level. Furthermore, we identified the epithelial-to-mesenchymal transition-related transcription factor, TWIST1, as a master regulator of tumor aggressiveness by controlling miR-199a-3p and -5p expression. Random walk analysis of established miRNA-mRNA network identified NDUFA2, DLD, COX15, NDUFB5, and TIMM13 as crucial metabolic hubs downregulated as tumors become aggressive. Drug response analysis suggested that targeting PDGFR signaling may offer a novel therapeutic approach to counteract the aggressiveness driven by the loss of oxidative phosphorylation. Conclusion We identified TWIST1/miR-199a axis mediated suppression of oxidative phosphorylation as major metabolic contributor towards tumor aggressiveness in carcinomas. These insights underscore the critical interplay between metabolic reprogramming and tumor aggressiveness, opening avenues for potential metabolic therapies in clinical settings.
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