Meta Carbons Research Articles

Computational Insights into Palladium-Catalyzed Site-Selective Anilide and Benzamide-Type [3+2] Annulation via Double C-H Bond Activation.

The mechanism of palladium-catalyzed annulation reactions of benzamide- and anilide-type aromatic systems with maleimides is investigated using density functional theory. Double C-H bond activation is key to forming the desired annulation product. The first C-H bond activation for anilide- and amide-type ligands can occur at the ortho and benzylic C-H bonds, while the second C-H activation occurs at the meta carbon of the aromatic rings. For the anilide-type system, ortho and benzylic C-H bond activations occur via four- and five-membered palladacycles, respectively. In contrast, for the benzamide-type system, ortho and benzylic C-H bond activations occur via five- and six-membered palladacycles, respectively. The energy span model suggests that the initial C-H bond activation step at the benzylic position determines the turnover frequency for both anilide- and benzamide-type systems. Energy decomposition analysis and distortion-interaction/activation-strain analyses are employed to understand the electronic and steric factors controlling the turnover frequency-determining transition state.

Alternant Hydrocarbon Diradicals as Optically Addressable Molecular Qubits.

High-spin molecules allow for bottom-up qubit design and are promising platforms for magnetic sensing and quantum information science. Optical addressability of molecular electron spins has also been proposed in first-row transition-metal complexes via optically detected magnetic resonance (ODMR) mechanisms analogous to the diamond-nitrogen-vacancy color center. However, significantly less progress has been made on the front of metal-free molecules, which can deliver lower costs and milder environmental impacts. At present, most luminescent open-shell organic molecules are π-diradicals, but such systems often suffer from poor ground-state open-shell characters necessary to realize a stable ground-state molecular qubit. In this work, we use alternancy symmetry to selectively minimize radical-radical interactions in the ground state, generating π-systems with high diradical characters. We call them m-dimers, referencing the need to covalently link two benzylic radicals at their meta carbon atoms for the desired symmetry. Through a detailed electronic structure analysis, we find that the excited states of alternant hydrocarbon m-diradicals contain important symmetries that can be used to construct ODMR mechanisms leading to ground-state spin polarization. The molecular parameters are set in the context of a tris(2,4,6-trichlorophenyl)methyl (TTM) radical dimer covalently tethered at the meta position, demonstrating the feasibility of alternant m-diradicals as molecular color centers.

The influence of anions in the ionic liquid-water mixtures on the conformational structures of emeraldine base and emeraldine salt form of polyaniline

The development of antifouling membranes for water filtration applications is challenging. Conducting polymers can show enhanced antifouling characteristics by blending with various polymers, nanomaterials, and Ionic liquids (ILs). In this paper, we perform an all-atom molecular dynamics simulation on a conducting polymer polyaniline (PANI) immersed in IL-water mixtures. Two forms of PANI were considered, namely Emeraldine base (EB) and Emeraldine salt (ES) as well as two different water-mixed ILs are considered namely (a) 1-ethyl-3-methyl imidazolium [EMIM]+ hexafluorophosphate [PF6]- and (b) 1-ethyl-3-methyl imidazolium [EMIM]+ tetra-fluoroborate [BF4]-. We present various intra- and inter-molecular structural properties, solvation thermodynamics, and dynamic properties. We observe that with an increase in IL concentration, the radius of gyration (Rg) value shows a decrease for ES in pure state in both ILs; on the other hand, we see a minimal increase in the Rg values of EB in both ILs. The dihedral angle distribution analysis shows a combination of gauche and trans state for ES, whereas trans state is more pronounced for the case of EB in both water-IL mixtures. The radial distribution function (RDF) analysis between the ortho, meta carbons of the benzene rings, and the amine groups on ES with [BF4]- and [PF6]- show significant structural peaks. On the other hand, EB and ES show lower interaction with the water molecules. The number of hydrogen bonds (h-bonds) between polymer and water is higher for EB than ES in both IL-water mixtures. The hydrogen bond lifetime (τ) values show one-fold higher values for EB than ES. The self-diffusion coefficient (D) values of water show a decrease with an increase in IL concentration. The thermodynamic properties solvation enthalpy (ΔH) and excess molar volume (VmE) for both ES and EB show a more favorable solvation in [EMIM]+[BF4]- when compared to [EMIM]+[PF6]- with an increase in IL concentration. These observations are crucial for selecting ILs and designing sustainable polymers for antifouling membranes.

Understanding the Regioselectivity of Ion-Pair-Assisted Meta-Selective C(sp2)-H Activation in Conformationally Flexible Arylammonium Salts.

The lack of directionality and the long-range nature of Coulomb interactions have been a bottleneck to achieve chemically precise C-H activation using ion-pairs. Recent report by Phipps and co-workers of the ion-pair-directed regioselective Iridium-catalyzed borylation opens a new direction toward harnessing noncovalent interactions for C-H activation. In this article, the mechanism and specific role of ion-pairing are investigated using density functional theory (DFT). Computational studies reveal that meta C-H activation is kinetically more favorable than the para analogue due to stronger electrostatic interactions between the ion-pairs in closer proximity [d(NMe3+···SO3-)TSP1m = 3.93 Å versus d(NMe3+···SO3-)TSP1p = 4.30 Å]. The electrostatic interactions overwhelm the Pauli repulsion and distortion interactions incurred in bringing the oppositely charged ions in close contact for the rate-limiting meta transition state (TSP1m). Multiple linear regression shows that the free energies of activation correlate well with descriptors like the charge densities on the meta carbon and Ir atom along with that on the cation and anion with R2 = 0.74. Tuned range-separated DFT calculations demonstrate accurately the localization of charge separation in the reactant complex and transition state for the meta selectivity.

Catalytic consequences of hydrogen addition events and solvent-adsorbate interactions during guaiacol-H2 reactions at the H2O-Ru(0 0 0 1) interface

Catalytic reactions of biomass-derived phenolics and H2 occur on transition metal surfaces via competitive C–O cleavage and ring saturation pathways, with both requiring multiple hydrogen addition events before forming their respective rate limiting transition states. These events are markedly affected by solvent chemical identity, with polar protic solvents ionizing hydrogen adatoms (H*) to interfacial protons (H+) and opening up new catalytic routes. Here, we establish the reaction coordinate space for guaiacol-H2 reactions on Ru(0 0 0 1) using density functional theory and describe the atomic-scale effect of a polar protic solvent, H2O. Coupled H+ and H* attack leads to quasi-equilibrated enol and keto intermediates as the precursors for C–O cleavage and ring saturation, respectively. For C–O cleavage, H2O solvent enables a lower energy pathway via concomitant transfer of the hydroxyl H+ to the methoxy oxygen during C–OCH3 cleavage, forming a charge separated [Ru(s)–(C6H5O−)⋯(H+)⋯OCH3]† transition state and reducing the barrier by up to 0.8 eV as compared to unassisted C–OCH3 cleavage. For ring saturation, H* attack onto an unsaturated meta carbon is rate limiting with no direct solvent participation, suggesting that protic polar solvents selectively promote the C–O cleavage pathway. Taken together, we show that activating guaiacol for either C–O bond cleavage or ring saturation product formation depends on the reactive hydrogen identity (H* or H+), enol/keto isomerization equilibrium, and accessibility of the proton assisted Car–OCH3 cleavage transition state. All such factors are tunable via changes to the solvent or metal identity.

Discriminatory Interaction Behavior of Lipid Vesicles toward Diversely Emissive Carbon Dots Synthesized from Ortho, Meta, and Para Isomeric Carbon Precursors.

Photoluminescent carbon dots (C-dots) are widely used for bioimaging techniques to study different cellular processes. However, biocompatibility of C-dots is crucial because the wrong selection of C-dots may lead to an adverse effect on a particular cellular process. Herein, we investigate the interaction of zwitterionic lipid vesicles with photoluminescent C-dots derived from different isomeric (ortho, meta, and para) precursors of phenylenediamine (PDA) by spectroscopic and microscopic imaging techniques as well as dynamic light scattering methods. The study reveals that interaction of lipid vesicles with C-dots is highly dependent on the properties of the isomeric precursors. We find that vesicles retain their morphology upon interaction with ortho C-dots (oCD). The microscopic images reveal that oCD are selectively embedded in the lipid vesicles and can effectively be used for imaging purpose. On the contrary, meta and para C-dots (mCD and pCD) being located on the interfacial region induce aggregation in the vesicles. We explain the observation in terms of the location of the C-dots on the lipid vesicles, their electrostatic attraction at the vesicle interface, possible cross-linking with other vesicles and different hydration features of the isomeric precursors of the C-dots. The study may be helpful in understanding the interactions and attachment processes of C-dots at the interface of biological membranes.

Understanding the Mechanism of Nitrobenzene Nitration with Nitronium Ion: A Molecular Electron Density Theory Study

AbstractThe nitration reaction of nitrobenzene with nitronium ion yielding ortho‐, meta‐ and para‐dinitrobenzenes has been studied within the Molecular Electron Density Theory, using DFT computational methods at the B3LYP/6‐311G(d,p) level. This electrophilic aromatic substitution (EAS) reaction takes place through a two‐step mechanism involving the formation of a tetrahedric cation intermediate. The electrophilic attack of nitronium ion on nitrobenzene is the rate‐determining step of this EAS reaction, and consequently, responsible for the composition of the reaction mixture. The subsequent proton abstraction from the cation intermediate is barrierless. From the computed activation Gibbs free energies, a relationship 11.0 (ortho) : 87.3 (meta) : 1.7 (para) of the dinitrobenzenes is estimated, in clear agreement with the experimental outcome. The similar nucleophilic activation of the ortho and meta carbons of nitrobenzene makes it possible to question the hypothesis for the orientation in EAS reactions involving nucleophilically deactivated benzenes based on the relative stability of the tetrahedric cation intermediates.

Libration of phenyl groups detected by VT-SSNMR: Comparison with X-ray crystallography.

The X-ray crystal structure of 2-benzyl-1H-benzimidazole, 2BnBzIm, was determined at 293K showing no dynamic phenomena (disorder) of any class. On the other hand, some 13 C NMR signals were absent in the CPMAS spectrum (100MHz, 300K). We decided to carry out variable-temperature SSNMR and discovered that the missing signals are ortho and meta carbons of the phenyl ring of the benzyl group. Line-shape analysis and the Eyring equation were used to determine the barrier, which was compared with the calculated DFT for the gas phase that it is much lower.

Halide Control of N,N-Coordination versus N,C-Cyclometalation and Stereospecific Phenyl Ring Deuteration of Osmium(II) p-Cymene Phenylazobenzothiazole Complexes.

We report the synthesis of halido Os(II) p-cymene complexes bearing bidentate chelating phenylazobenzothiazole (AZBTZ) ligands. Unlike the analogous phenylazopyridine (AZPY) complexes, AZBTZ-NMe2 is capable of both N,N-coordination to Os(II) and cyclometalation to form N,C-coordinated species. N,C-Coordination occurs via an azo nitrogen and an ortho carbon on the aniline ring, as identified by 1H NMR and X-ray crystallography of [Os(p-cym)(N,N-AZBTZ-NMe2)Cl]PF6 (1a), [Os(p-cym)(N,N-AZBTZ-NMe2)Br]PF6 (2a), [Os(p-cym)(N,C-AZBTZ-NMe2)Br] (2b), and [Os(p-cym)(N,C-AZBTZ-NMe2)I] (3b). The N,C-coordinated species is more stable and is not readily converted to the N,N-coordinated complex. Analysis of the crystal structures suggests that their formation is influenced by steric interactions between the p-cym and AZBTZ-NMe2 ligands: in particular, larger monodentate halide ligands favor N,C-coordination. The complexes [Os(p-cym)(N,N-Me2-AZBTZ-NH2)Cl]PF6 (4) and [Os(p-cym)(N,N-Me2-AZBTZ-NH2)I]PF6 (5) were synthesized with methyl groups blocking the ortho positions on the aniline ring, forcing an N,N-coordination geometry. 1H NMR NOE experiments confirmed hindered rotation of the arene ligand and steric crowding around the metal center. Complex 2b exhibited unexpected behavior under acidic conditions, involving regiospecific deuteration of the aniline ring at the meta position, as observed by 1H NMR and high-resolution ESI-MS. Deuterium exchange occurs only under acidic conditions, suggesting an associative mechanism. The calculated partial charges on 2b show that the meta carbon is significantly more negatively charged, which may account for the regiospecificity of deuterium exchange.

Molybdenum(0) Dihapto-Coordination of Benzene and Trifluorotoluene: The Stabilizing and Chemo-Directing Influence of a CF3 Group.

The preparation of the complexes TpMo(NO)(DMAP)(η2-PhCF3) (5) and TpMo(NO)(DMAP)(η2-benzene) (3) is described. The CF3 group is found to stabilize the metal-arene bond strength in 5 by roughly 3 kcal/mol compared to that in 3, allowing the large-scale synthesis and isolation of the trifluorotoluene analogue (5, 37 g, 70%). When a benzene solution of 5 is allowed to stand, clean conversion to the benzene analogue 3 occurs, and this complex may be precipitated from solution upon the addition of pentane and isolated. The trifluorotoluene complex is shown to be a synthetic precursor to functionalized cyclohexadienes: In solution, it selectively protonates at the ortho position, and the resulting η2-arenium species undergoes reactions with nucleophiles at the adjacent meta carbon. Thus, reactions of 5, triflic acid, and either N-methylpyrrole or 1-methoxy-2-methyl-1-(trimethylsilyloxy)-1-propene result in 5-substituted-1,3-cyclohexadienes after removal of the metal.

A New Molecular Design Based on Thermally Activated Delayed Fluorescence for Highly Efficient Organic Light Emitting Diodes.

Two benzoylpyridine-carbazole based fluorescence materials DCBPy and DTCBPy, bearing two carbazolyl and 4-(t-butyl)carbazolyl groups, respectively, at the meta and ortho carbons of the benzoyl ring, were synthesized. These molecules show very small ΔEST of 0.03 and 0.04 eV and transient PL characteristics indicating that they are thermally activated delayed fluorescence (TADF) materials. In addition, they show extremely different photoluminescent quantum yields in solution and in the solid state: in cyclohexane the value are 14 and 36%, but in the thin films, the value increase to 88.0 and 91.4%, respectively. The OLEDs using DCBPy and DTCBPy as dopants emit blue and green light with EQEs of 24.0 and 27.2%, respectively, and with low efficiency roll-off at practical brightness level. The crystal structure of DTCBPy reveals a substantial interaction between the ortho donor (carbazolyl) and acceptor (4-pyridylcarbonyl) unit. This interaction between donor and acceptor substituents likely play a key role to achieve very small ΔEST with high photoluminescence quantum yield.

Theoretical study of the effect of the element silicon, the adsorption enthalpy nitrite, on the surface of graphene nanostructure

The project is comparing four types of calculation derived graphene. To evaluate the effect of silicon element to Thermochemistry parameters of absorption of nitrite in these derivatives. Two of these derivatives of graphene carbon nitrite connection made, the difference is only in the state of Para and meta carbons connectivity state (named P & M). But in other Derivations first put silicon instead carbon in the meta and para position(named GER Si2 para & GER Si2 metha), then nitrite is added to the silicon(named P* & M*).

Effect of Temperature on thermodynamic parameters and chemical properties at adsorption process nitrite on the Graphene Nano surface, density functional theory method

The project is comparing four types of calculation derived graphene. That two of these derivatives of graphene carbon nitrite connection created the difference is only in the state of Para and meta carbons connectivity state. But other derivatives first silicon-carbon alternatives in the meta and para position, then nitrite is added to the silicon. To evaluate the effect of silicon element to absorb energy and other thermodynamic parameters in the derivatives compared with them.

Permissivity of the biphenyl-specific aerobic bacterial metabolic pathway towards analogues with various steric requirements.

It has repeatedly been shown that aryl-hydroxylating dioxygenases do not possess a very high substrate specificity. To gain more insight into this phenomenon, we examined two powerful biphenyl dioxygenases, the well-known wild-type enzyme from Burkholderia xenovorans LB400 (BphA-LB400) and a hybrid enzyme, based on a dioxygenase from Pseudomonas sp. B4-Magdeburg (BphA-B4h), for their abilities to dioxygenate a selection of eight biphenyl analogues in which the second aromatic ring was replaced by aliphatic as well as aliphatic/aromatic moieties, reflecting a variety of steric requirements. Interestingly, both enzymes were able to catalyse transformation of almost all of these compounds. While the products formed were identical, major differences were observed in transformation rates. In most cases, BphA-B4h proved to be a significantly more powerful catalyst than BphA-LB400. NMR characterization of the reaction products showed that the metabolite obtained from biphenylene underwent angular dioxygenation, whereas all other compounds were subject to lateral dioxygenation at ortho and meta carbons. Subsequent growth studies revealed that both dioxygenase source strains were able to utilize several of the biphenyl analogues as sole sources of carbon and energy. Therefore, prototype BphBCD enzymes of the biphenyl degradative pathway were examined for their ability to further catabolize the lateral dioxygenation products. All of the ortho- and meta-hydroxylated compounds were converted to acids, showing that this pathway is quite permissive, enabling catalysis of the turnover of a fairly wide variety of metabolites.

Conformation analysis of triphenylphosphine in trans and cis triphenylphosphine-substituted Fischer carbene complexes

The synthesis and selected crystal structures of novel (M=Cr or Mo) and known (M=W) [(CO)4(PPh3)M=C(OEt)R] complexes, M=Cr, R=2-thienyl (1), 2-furyl (2); M=Mo, R=2-thienyl (3), 2-furyl (4); M=W, R=2-thienyl (5), 2-furyl (6), are presented. Experimental crystal structures and DFT calculations of selected trans- and cis-triphenylphosphine-substituted Fischer carbene complexes, illustrate that the minimum energy conformation of triphenylphosphine (PPh3) in octahedral [(CO)4(PPh3)ML]-complexes generally have distinct features that can be described in terms of the “plane of nadir energy”, a plane linking all points of minimum steric compression between the ligands. The generally observed orientation of PPh3 involves a correlated feathering of the phenyl groups with the PCipso bond of one phenyl group orientated near parallel to the nadir plane, and a meta carbon (Cm) of the other two phenyl groups orientated as near as possible to the nadir plane, orthogonal to the first. Although the orientation of PPh3 in 6-trans, [(CO)4(PPh3)W=C(OEt)2-furyl], deviates from this, DFT correctly calculated the unexpected and not generally observed PPh3 orientation.

Transmission of Electronic Substituent Effects through a Benzene Framework: A Computational Study of 4-Substituted Biphenyls Based on Structural Variation

The transmission of substituent effects through a benzene framework has been studied by a novel approach, based on the structural variation of the Ph group in p-Ph-C(6)H(4)-X molecules. The molecular structures of many 4-substituted biphenyls were determined from MO calculations at the HF/6-31G* and B3LYP/6-311++G** levels of theory. The twist angle between the phenyl probe (ring B) and the benzene framework carrying the substituent (ring A) was set at 90° to prevent π-electron transfer from one ring to the other and at 0° to maximize it. The structural variation of the probe is best represented by a linear combination of the internal ring angles, termed S(F)(BIPH(o)) and S(F)(BIPH(c)) for the orthogonal and coplanar conformations of the molecules, respectively. Regression analysis of these parameters using appropriate explanatory variables reveals a composite field effect, a substantial proportion of which is originated by resonance-induced π-charges on the carbon atoms of ring A. Field-induced polarization of the π-system of ring A also contributes to the structural variation of the probe. Thus, the S(F)(BIPH(o)) parameter is very well reproduced by a linear combination of the π-charges on the ortho, meta, and para carbons of ring A, an uncommon example of a quantitative relationship between molecular geometry and electron density distribution. Comparison of S(F)(BIPH(o)) with the gas-phase acidities of para-substituted benzoic acids shows that, while the deprotonating carboxylic probe is more sensitive to π-electron withdrawal than donation, the phenyl probe is equally sensitive to both. While the ability of the orthogonal biphenyl system to exchange π-electrons with the para substituent is the same as that of the benzene ring in Ph-X molecules, an increase by about 18% occurs when the conformation is changed from orthogonal to coplanar. The structural variation of the probe becomes more complicated, however. This is due to π-electron transfer from one ring to the other, which is shown to introduce quadratic terms in the regressions.

NMR characterization of substituent effects in cation–π interactions

Substituent effects in C6H5X…M+ (M+=Li+, Na+, K+, and NH4+) systems have been characterized using isotropic nuclear magnetic shielding constants (σ). Good linear relationship between σ and the Hammett substituent constant σp is established which suggests that the substituent effects can be quantified by NMR experiments. Irrespective of the electronic nature of X, meta carbons, and all the hydrogens are always deshielded and this property is useful for detecting cation–π interaction. The σ-scan plots revealed that the deshielding effect of the cation on the aromatic ring is significant even at large cation–π distance (∼4.5Å).

Synthesis and fluorescence study of 3-aminoalkylamidonapthalimides

Abstract A new series of fluorescent 3-aminoalkylamidonapthalimides were synthesized starting form 1,8-naphthalic anhydride. The structure of these compounds was characterized by 1 H NMR, 13 C NMR, IR and Mass spectral analysis. The solvent effect on 1 H and 13 C NMR of these compounds was studied in CDCl 3 , CDCl 3 :DMSO-d 6 (7:3, v/v) and DMSO-d 6 . NMR chemical shift of the ortho and para protons and meta carbons of naphthalene ring showed maximum variation on moving from CDCl 3 to DMSO-d 6 . In CDCl 3 solvent naphthalene ring may exist in slightly puckered form while in DMSO-d 6 it attains maximum planar configuration. Fluorescent properties of the title compounds and their precursors were investigated in different solvents like chloroform, ethanol, acetonitrile, acetone, DMSO and water. 3-Aminoalkylamidonapthalimides exhibited improved fluorescence than their precursors. Cyclic amino derivatives yielded higher fluorescence quantum efficiency in protic solvents, ethanol and water. Acylic amino derivatives yielded high fluorescence quantum efficiency in chloroform solvent. The maximum fluorescence quantum yield up to 0.14 was found for butyl amine derivative in chloroform solvent. In general proton accepting nucleophilic solvents like acetone and DMSO quenched the fluorescence.

INVESTIGATION OF MOLECULAR INTERACTION BETWEEN PHENYLACETYLENE AND HEXAMETHYLPHOSPHORIC TRIAMIDE BY <sup>13</sup>C NMR T<sub>1</sub> RELAXATION TIME STUDIES AND AB INITIO QM CALCULATIONS

Intermolecular interactions and molecular translational and rotational mobility are key factors in molecular material sciences, e.g. liquid crystals. One of the important substructures is given by phenylacetylene, Ph-CºCH. Its rotational behavior in its pure form and in high dilution in hexamethylphosphoric triamide OP[N(CH3)2]3 (HMPA) has been studied by means 13C NMR T1 relaxation times at ambient temperature as measured by the inversion recovery method. HMPA is an exceptional solvent in that is has a quite large dipole moment but comparatively low relative dielectricity constant. From the molecular shape Ph-CºCH is expected to exhibit anisotropic rotational diffusion which in fact can be deduced from the measured set of T1 values of the ortho, meta and para carbon nuclei in the neat liquid as well as in the HMPA solution. This expected result rules the dominance of a linearly molecules pair Ph-CºCH...HMPA along their dipole moment axes as anticipated in view of the large HMPA dipole moment. In order to conform with the T1 data, a linear arrangement of Ph-CºCH via the interaction between its weakly acidic H-atom with negatively charge O-atom of HMPA molecules seems to lead to such an anisotropic rotational motion. This hypothesis is supported by ab initio QM calculations which come out with higher interaction energy for linear orientation than other geometries. These ab initio calculations were performed with the basis set of RHF/6-31G(d) for the single molecules of Ph-CºCH and HMPA as well as for their various geometries of the molecules pair. Molecular dynamics simulations need to be performed for further confirmation. Keywords: Relaxation Times, HMPA, pheylacetylene, ab initio, intermolecular interaction, rotational diffusion

Epoxidation, Cyclopropanation, and Electrophilic Addition Reactions at the meta Position of Phenol and meta-Cresol

Phenols, when coordinated to tungsten, undergo conversion to their 2H tautomers. In this form, these phenols undergo a variety of reactions with electrophiles including cyclopropanation, epoxidation, and electrophilic addition to the meta carbon, eventually leading to highly functionalized cyclohexenones.